BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13292
(198 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91094201|ref|XP_971553.1| PREDICTED: similar to mitochondrial ribosomal protein, L40,
putative [Tribolium castaneum]
gi|270010911|gb|EFA07359.1| hypothetical protein TcasGA2_TC015959 [Tribolium castaneum]
Length = 178
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 79/105 (75%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
KK R R+LP LS+ +E R+ L K+W YR E D +++DR+ ++QQ+ALDELR ESE
Sbjct: 74 KKSRMRSLPALSDSELEQRALLDKQWATYRKNEHLTDVQMLDRIFFAQQKALDELRKESE 133
Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
ELYQEA+QID LLPF ++GPL TP I+NYE PDGDY DVS+ +E
Sbjct: 134 ELYQEAMQIDFRLLPFKSEGPLETPAIDNYESPDGDYADVSKKWE 178
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
ID LLPF ++GPL TP I+NYE PDGDY DVS+ +E
Sbjct: 142 IDFRLLPFKSEGPLETPAIDNYESPDGDYADVSKKWE 178
>gi|322792324|gb|EFZ16308.1| hypothetical protein SINV_06016 [Solenopsis invicta]
Length = 192
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 42 RNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKE 101
R EK+ + K E L K + + R R LPP+S+E E+R L K+W Y+S++
Sbjct: 60 RRLEKQAKQLKPVFE--LEIPSKLIEERNQRLRKLPPISKEEEEARILLQKDWNRYKSQQ 117
Query: 102 AQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECP 161
+ + + +D ++YSQQRALDELR+ESEELYQEAIQ+D LLP+ AKGPL TP I+NY+ P
Sbjct: 118 SMANVQAVDSILYSQQRALDELRMESEELYQEAIQLDLGLLPYTAKGPLKTPVIKNYDSP 177
Query: 162 DGDYTDVSRNFEKE 175
DG+YT+++R F+ E
Sbjct: 178 DGEYTNLTRKFDGE 191
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
+D LLP+ AKGPL TP I+NY+ PDG+YT+++R F+ E
Sbjct: 153 LDLGLLPYTAKGPLKTPVIKNYDSPDGEYTNLTRKFDGE 191
>gi|157116778|ref|XP_001658631.1| mitochondrial ribosomal protein, L40, putative [Aedes aegypti]
gi|108876312|gb|EAT40537.1| AAEL007762-PA [Aedes aegypti]
Length = 201
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 109/197 (55%), Gaps = 27/197 (13%)
Query: 1 MAPSVQYAIDPTLLPFAAKGPLHTPPIENYE-----CPD----GDYTDVSRNFEKEYRDR 51
+ P+ +++ T F A LHT I+N+ C + D ++E R R
Sbjct: 8 LRPATHFSLAKT---FLASRLLHTGAIQNFRFTPILCAEPLKKKKKIDPQIIKQREERKR 64
Query: 52 KAALEEILNKNKKPHQRK---------------KIRSRALPPLSEEVIESRSNLIKEWGI 96
K ++I K Q K K R R +S EV+ESR L K+W
Sbjct: 65 KRLEKQIRRLEKNARQLKPVEELEVPMELLDEQKQRKRTGIKVSPEVVESRVLLEKQWAK 124
Query: 97 YRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIE 156
YR ++ +DY+LIDR++ +Q +AL+ELRLESEELYQ+A+Q+D L+PF A GP+ TPPIE
Sbjct: 125 YRMEQKLQDYQLIDRVLAAQTKALNELRLESEELYQKAVQVDEGLVPFKAVGPVATPPIE 184
Query: 157 NYECPDGDYTDVSRNFE 173
YE PDG+Y DVS+ FE
Sbjct: 185 GYEMPDGEYLDVSKKFE 201
>gi|307204883|gb|EFN83438.1| 39S ribosomal protein L40, mitochondrial [Harpegnathos saltator]
Length = 174
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 76/107 (71%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
+K R R PLS E +ESR L KEW Y++ + D++ ID ++YSQQ+ALDELR ESE
Sbjct: 67 RKQRLRNSSPLSAEEVESRVLLQKEWNRYKNNQYLADFQTIDSMLYSQQKALDELRAESE 126
Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
ELYQEAIQ+D LP+ KGPL TPPIENY PDG+Y + +R +E E
Sbjct: 127 ELYQEAIQVDLAFLPYVVKGPLKTPPIENYNSPDGEYVNTTRKYEGE 173
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
+D LP+ KGPL TPPIENY PDG+Y + +R +E E
Sbjct: 135 VDLAFLPYVVKGPLKTPPIENYNSPDGEYVNTTRKYEGE 173
>gi|307189827|gb|EFN74099.1| 39S ribosomal protein L40, mitochondrial [Camponotus floridanus]
Length = 203
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 79/107 (73%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
KK R R LP LSEE +ESR L KEW Y++++ + ++ID + YSQQ+ALDELR ESE
Sbjct: 96 KKKRLRQLPKLSEEEVESRILLQKEWSRYKTQQHLNNVQIIDSIFYSQQKALDELRAESE 155
Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
+LYQEAI D LLP+ AKGPL TP IENY+ PDG+Y +++R F+ E
Sbjct: 156 QLYQEAIHRDFKLLPYTAKGPLKTPAIENYDSPDGNYINMTRKFDGE 202
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D LLP+ AKGPL TP IENY+ PDG+Y +++R F+ E
Sbjct: 165 DFKLLPYTAKGPLKTPAIENYDSPDGNYINMTRKFDGE 202
>gi|156551151|ref|XP_001604544.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Nasonia
vitripennis]
Length = 203
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%)
Query: 67 QRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
Q IR R LP L+ E +E R+ L KEW Y++K+ + +LIDR +++Q +A+ EL+
Sbjct: 94 QELGIRKRDLPALTTETLEERAALFKEWNKYKTKQHYQTLRLIDRYMFAQDKAISELKEV 153
Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
SEELY+ AIQIDP LLP++ KGPL+T PIE++E PDGDY DV++ +E E
Sbjct: 154 SEELYEAAIQIDPDLLPYSRKGPLNTAPIEDFEAPDGDYQDVTKKYEGE 202
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
IDP LLP++ KGPL+T PIE++E PDGDY DV++ +E E
Sbjct: 164 IDPDLLPYSRKGPLNTAPIEDFEAPDGDYQDVTKKYEGE 202
>gi|332018279|gb|EGI58884.1| 39S ribosomal protein L40, mitochondrial [Acromyrmex echinatior]
Length = 203
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
K+ R R LP +SEE +ES+ L KEW Y+S++ + + ID + YSQQ+ALDELR ESE
Sbjct: 96 KEQRLRKLPSISEEEMESKILLQKEWNRYKSQQHLANIQAIDSIFYSQQKALDELRAESE 155
Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
+LYQEA+Q D LLP KGPL TPPIENY PDG+YT+ +R F+ E
Sbjct: 156 DLYQEAVQPDLGLLPHTVKGPLKTPPIENYNSPDGEYTNTTRKFDGE 202
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 6 QYAIDP--TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
Q A+ P LLP KGPL TPPIENY PDG+YT+ +R F+ E
Sbjct: 159 QEAVQPDLGLLPHTVKGPLKTPPIENYNSPDGEYTNTTRKFDGE 202
>gi|119115354|ref|XP_311037.3| AGAP000110-PA [Anopheles gambiae str. PEST]
gi|116130795|gb|EAA06344.3| AGAP000110-PA [Anopheles gambiae str. PEST]
Length = 197
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 76/102 (74%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R +P + E++ESR+ L K+W YR +E DY+L DR++ +Q +AL EL+L S+ELY
Sbjct: 96 RKRNVPKPTAELLESRALLEKQWAKYRMQEKLADYQLFDRIVAAQAKALGELQLASDELY 155
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AIQ DP LLPF A+GP+ TPPI++YE PDG+Y DVSR +E
Sbjct: 156 QRAIQPDPALLPFVAQGPVSTPPIKDYEQPDGEYIDVSRKWE 197
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
DP LLPF A+GP+ TPPI++YE PDG+Y DVSR +E
Sbjct: 162 DPALLPFVAQGPVSTPPIKDYEQPDGEYIDVSRKWE 197
>gi|195111124|ref|XP_002000129.1| GI22697 [Drosophila mojavensis]
gi|193916723|gb|EDW15590.1| GI22697 [Drosophila mojavensis]
Length = 189
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 71/102 (69%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PLS E IE R+ L K+W Y+ ++ D+++IDRL+ SQ +AL+ELR ESEELY
Sbjct: 88 RERKLAPLSAEEIEHRALLKKQWAQYKHEQKVADFQIIDRLVQSQNKALEELRCESEELY 147
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI ID TLLP + KGP+ TPPI+ Y PDGDY + +E
Sbjct: 148 QAAIAIDTTLLPVSVKGPVATPPIKGYISPDGDYIHQAMKWE 189
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 8 AIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
AID TLLP + KGP+ TPPI+ Y PDGDY + +E
Sbjct: 152 AIDTTLLPVSVKGPVATPPIKGYISPDGDYIHQAMKWE 189
>gi|194743450|ref|XP_001954213.1| GF16858 [Drosophila ananassae]
gi|190627250|gb|EDV42774.1| GF16858 [Drosophila ananassae]
Length = 198
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 71/102 (69%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL +E R+ L K+W ++ +E D+++IDRL+ +Q +AL ELR ESEELY
Sbjct: 95 RQRKLTPLGNAELEERALLKKQWAHFKHEERVADFQIIDRLVQAQNKALAELRSESEELY 154
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI++DP LLP A KGP+ TPPI+NY+ PDGDY S +E
Sbjct: 155 QAAIEVDPQLLPVAVKGPVATPPIKNYDSPDGDYVHQSMKWE 196
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+DP LLP A KGP+ TPPI+NY+ PDGDY S +E
Sbjct: 160 VDPQLLPVAVKGPVATPPIKNYDSPDGDYVHQSMKWE 196
>gi|195500036|ref|XP_002097202.1| GE26091 [Drosophila yakuba]
gi|194183303|gb|EDW96914.1| GE26091 [Drosophila yakuba]
Length = 196
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PLS +E R+ L K+W Y+ E D+++IDRL+ +Q +AL ELR ESEELY
Sbjct: 93 RQRKLAPLSSAQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRSESEELY 152
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 153 QAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 158 IDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
>gi|195571765|ref|XP_002103873.1| GD18750 [Drosophila simulans]
gi|194199800|gb|EDX13376.1| GD18750 [Drosophila simulans]
Length = 196
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL+ +E R+ L K+W Y+ E DY++IDRL+ +Q +AL ELR ESEELY
Sbjct: 93 RQRKLVPLTSAQLEERALLKKQWAHYKHDERVADYQIIDRLVQAQNKALAELRRESEELY 152
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 153 QAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 158 IDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
>gi|195329864|ref|XP_002031630.1| GM23940 [Drosophila sechellia]
gi|194120573|gb|EDW42616.1| GM23940 [Drosophila sechellia]
Length = 196
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL+ +E R+ L K+W Y+ E DY++IDRL+ +Q +AL ELR ESEELY
Sbjct: 93 RQRKLVPLTSAQLEERALLKKQWAHYKHDERVADYQIIDRLVQAQNKALAELRRESEELY 152
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 153 QAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 158 IDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
>gi|194902066|ref|XP_001980572.1| GG18100 [Drosophila erecta]
gi|190652275|gb|EDV49530.1| GG18100 [Drosophila erecta]
Length = 196
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 80/138 (57%), Gaps = 14/138 (10%)
Query: 42 RNFEKEYRDRKAA------LEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
R EK R K LE I KNK R R L P+S + R+ L K+W
Sbjct: 65 RRLEKNARQLKPVEELEVPLELIDEKNK--------RQRKLAPVSSAQLVERALLKKQWA 116
Query: 96 IYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPI 155
Y+ E D+++IDRL+ +Q RAL ELR ESEELYQ AI+IDP LLP A KGP+ TPPI
Sbjct: 117 HYKHDERVADFQIIDRLVQAQNRALAELRRESEELYQAAIEIDPQLLPVAMKGPVATPPI 176
Query: 156 ENYECPDGDYTDVSRNFE 173
++Y PDGDY S +E
Sbjct: 177 KDYVSPDGDYLHQSMKWE 194
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 158 IDPQLLPVAMKGPVATPPIKDYVSPDGDYLHQSMKWE 194
>gi|17737911|ref|NP_524318.1| mitochondrial ribosomal protein L40 [Drosophila melanogaster]
gi|7299440|gb|AAF54629.1| mitochondrial ribosomal protein L40 [Drosophila melanogaster]
gi|17946395|gb|AAL49231.1| RE65766p [Drosophila melanogaster]
gi|220948792|gb|ACL86939.1| mRpL40-PA [synthetic construct]
gi|220958216|gb|ACL91651.1| mRpL40-PA [synthetic construct]
Length = 196
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 70/102 (68%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL+ + +E R+ L K+W Y+ E D+++IDRL+ +Q +AL ELR ESEELY
Sbjct: 93 RQRKLAPLTIDQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRRESEELY 152
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 153 QAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
IDP LLP A KGP+ TPPI++Y PDGDY S +E
Sbjct: 158 IDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWE 194
>gi|332374776|gb|AEE62529.1| unknown [Dendroctonus ponderosae]
Length = 199
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
K+ R R + S E++E R L K W ++ ++ D + IDRL++ QQ+ALDELR ESE
Sbjct: 96 KQARQRGISH-SAELLEKRVLLEKRWANFKREQVLTDLQTIDRLLFCQQKALDELRNESE 154
Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
ELYQEAIQ D L+PF + GP+ TP IENY+ PDG+Y DVS+ +
Sbjct: 155 ELYQEAIQFDFHLIPFTSVGPVETPAIENYDVPDGEYQDVSKKW 198
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 4 SVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
++Q+ D L+PF + GP+ TP IENY+ PDG+Y DVS+ +
Sbjct: 160 AIQF--DFHLIPFTSVGPVETPAIENYDVPDGEYQDVSKKW 198
>gi|195444636|ref|XP_002069958.1| GK11291 [Drosophila willistoni]
gi|194166043|gb|EDW80944.1| GK11291 [Drosophila willistoni]
Length = 189
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R LPPLS E R+ L K+W Y+ E D+++IDRL+ +Q++AL ELR ESEELY
Sbjct: 88 RQRKLPPLSSAEQEQRALLKKQWARYKHDEKVSDFQIIDRLVQAQEKALQELRKESEELY 147
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
+ AI++D L+P KGP+ TPPI+NY PDGDY S +E
Sbjct: 148 RAAIEVDLQLVPVTIKGPVATPPIKNYASPDGDYIQQSSKWE 189
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+D L+P KGP+ TPPI+NY PDGDY S +E
Sbjct: 153 VDLQLVPVTIKGPVATPPIKNYASPDGDYIQQSSKWE 189
>gi|242019158|ref|XP_002430032.1| mitochondrial 50S ribosomal protein L40, putative [Pediculus
humanus corporis]
gi|212515094|gb|EEB17294.1| mitochondrial 50S ribosomal protein L40, putative [Pediculus
humanus corporis]
Length = 157
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 12/125 (9%)
Query: 59 LNKNKKPHQRKKI-----------RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYK 107
LNK +KP + +I RSR + +SE V+ R +++EW +S E + D
Sbjct: 33 LNKEEKPIEENEIPICLMEDNKQQRSREIN-ISENVLYERMKILREWSKVKSNEMKSDIM 91
Query: 108 LIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTD 167
LI+RLI SQ++AL+ELRLESEELYQ A++ID L+PF GP TPP+ENY DG+Y D
Sbjct: 92 LINRLITSQKQALNELRLESEELYQAAVRIDEKLIPFQFNGPSETPPLENYPICDGEYID 151
Query: 168 VSRNF 172
+S+ +
Sbjct: 152 ISKKW 156
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
ID L+PF GP TPP+ENY DG+Y D+S+ +
Sbjct: 121 IDEKLIPFQFNGPSETPPLENYPICDGEYIDISKKW 156
>gi|253464989|gb|ACT31597.1| mitochondrial ribosomal protein L40 protein-like protein [Artemia
franciscana]
Length = 181
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
IR R L P+S+++ S+ L+ W ++ KEA++D I +L+ +Q +AL EL+LESEEL
Sbjct: 79 IRQRQLQPISQDIELSQRELLVAWSHHKQKEAERDLACIRKLLDAQGKALKELKLESEEL 138
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Y EA Q+D +LLP+ A GP TP I+ Y+ PDGDY DVSR +E
Sbjct: 139 YIEATQLDLSLLPYKAVGPTRTPQIKGYDPPDGDYIDVSRKWE 181
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+D +LLP+ A GP TP I+ Y+ PDGDY DVSR +E
Sbjct: 145 LDLSLLPYKAVGPTRTPQIKGYDPPDGDYIDVSRKWE 181
>gi|449282002|gb|EMC88933.1| 39S ribosomal protein L40, mitochondrial, partial [Columba livia]
Length = 155
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 69/101 (68%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R+R+LPPLS E E R L+K+W +++ K+AQ + K I L+ +QQ AL ELRLESEELY
Sbjct: 53 RARSLPPLSFEETERRVLLMKKWSLFKQKQAQAEKKAIQTLVEAQQEALKELRLESEELY 112
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q AI+ D L PF GP +TPP+ Y+ P+G D+++ +
Sbjct: 113 QAAIRRDEGLFPFERDGPDYTPPLPGYDPPEGKCVDITKVY 153
>gi|357618580|gb|EHJ71511.1| putative mitochondrial ribosomal protein, L40 [Danaus plexippus]
Length = 203
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 65/88 (73%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E+R L+KEW Y+ +E + IDR++ SQ+RALD+L ESE+LY EAI D +L+P+
Sbjct: 114 EARDVLLKEWTRYKKQEYMANVAQIDRIMASQRRALDKLYEESEDLYNEAIMPDLSLVPY 173
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ GP TPPI+NYE PDG+YTD+S+N+
Sbjct: 174 SISGPYATPPIKNYESPDGEYTDISKNW 201
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 29/35 (82%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L+P++ GP TPPI+NYE PDG+YTD+S+N+
Sbjct: 167 DLSLVPYSISGPYATPPIKNYESPDGEYTDISKNW 201
>gi|170045055|ref|XP_001850138.1| 39S ribosomal protein L40, mitochondrial [Culex quinquefasciatus]
gi|167868102|gb|EDS31485.1| 39S ribosomal protein L40, mitochondrial [Culex quinquefasciatus]
Length = 200
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 67 QRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
QR++ + + P ++ R L K+W ++ +E DY+LIDR++ +Q +AL+ELR E
Sbjct: 97 QRRRTQGVKVTPAMQD---ERVLLEKQWAKFKMQEKLGDYQLIDRVLAAQTKALNELRFE 153
Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
SE LYQ AIQ D L+P A GP+ TPPI YE PDG+Y D+S+ +E
Sbjct: 154 SEALYQAAIQPDLALVPLKAVGPVATPPIRGYEMPDGEYIDISKKWE 200
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 6 QYAIDP--TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
Q AI P L+P A GP+ TPPI YE PDG+Y D+S+ +E
Sbjct: 159 QAAIQPDLALVPLKAVGPVATPPIRGYEMPDGEYIDISKKWE 200
>gi|389609919|dbj|BAM18571.1| mitochondrial ribosomal protein L40 [Papilio xuthus]
Length = 203
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
LSE+ +E+R+ L KEW Y+ E + IDR++ +Q+RALD L ESE+LY EA+ D
Sbjct: 108 LSEQEVEARALLQKEWSRYKRAEYMANVAQIDRIMAAQKRALDMLYEESEDLYNEAVMPD 167
Query: 139 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+P++ KGP+ TPPI+NY+ PDG+Y DVS+ +
Sbjct: 168 LKLIPYSIKGPVATPPIKNYDSPDGEYIDVSKKW 201
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L+P++ KGP+ TPPI+NY+ PDG+Y DVS+ +
Sbjct: 167 DLKLIPYSIKGPVATPPIKNYDSPDGEYIDVSKKW 201
>gi|442756065|gb|JAA70192.1| Putative ribosomal protein l28 [Ixodes ricinus]
Length = 201
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R R LP L E + R + + W +Y + + + +++R++ +QQ+ALD L+ ES EL
Sbjct: 98 LRHRTLPVLDHETCQLREAMQRAWTVYCKRMHENEASMVERVVAAQQKALDMLQEESPEL 157
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
YQ A+Q+D LLPF K + TPPI+NYE PDG Y D ++ +
Sbjct: 158 YQAAVQVDEGLLPFKLKAVVSTPPIKNYEVPDGKYVDTTKKW 199
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
+D LLPF K + TPPI+NYE PDG Y D ++ +
Sbjct: 164 VDEGLLPFKLKAVVSTPPIKNYEVPDGKYVDTTKKW 199
>gi|260823298|ref|XP_002604120.1| hypothetical protein BRAFLDRAFT_71592 [Branchiostoma floridae]
gi|229289445|gb|EEN60131.1| hypothetical protein BRAFLDRAFT_71592 [Branchiostoma floridae]
Length = 196
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%)
Query: 65 PHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELR 124
P ++IR R +S E E R+ L KEW +R ++ + I ++ SQQRAL ELR
Sbjct: 89 PSLMEQIRERPPVRVSAEEQERRAALEKEWARFRRQQHVAEEAAISAMVTSQQRALQELR 148
Query: 125 LESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVS 169
ESEEL+Q+A+Q+DP L+P+ + GP TPPI Y+ PDG Y D++
Sbjct: 149 AESEELFQQAVQVDPLLIPYQSVGPTETPPISAYDPPDGKYVDLT 193
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVS 41
+DP L+P+ + GP TPPI Y+ PDG Y D++
Sbjct: 161 VDPLLIPYQSVGPTETPPISAYDPPDGKYVDLT 193
>gi|354480601|ref|XP_003502493.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Cricetulus griseus]
gi|344241478|gb|EGV97581.1| 39S ribosomal protein L40, mitochondrial [Cricetulus griseus]
Length = 206
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +Y+ +E + + I ++ +QQ AL EL+LES ELY+EAI+ DP
Sbjct: 107 SFEESEQRALLLKRWALYKKQEHEAERDAIRAMLEAQQEALQELKLESPELYEEAIKRDP 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+L PF +GP HTPPI NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHHTPPISNYQAPEGRYNDITKVY 199
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP HTPPI NY+ P+G Y D+++ +
Sbjct: 165 DPSLFPFEKEGPHHTPPISNYQAPEGRYNDITKVY 199
>gi|260823252|ref|XP_002604097.1| hypothetical protein BRAFLDRAFT_71614 [Branchiostoma floridae]
gi|229289422|gb|EEN60108.1| hypothetical protein BRAFLDRAFT_71614 [Branchiostoma floridae]
Length = 196
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%)
Query: 65 PHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELR 124
P ++IR R +S E E R+ L KEW +R ++ + I ++ +QQRAL ELR
Sbjct: 89 PSLMEQIRERPPVRVSAEEQERRAALEKEWARFRRQQHVAEEAAISAMVTAQQRALQELR 148
Query: 125 LESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVS 169
ESEEL+Q+A+Q+DP L+P+ + GP TPPI Y+ PDG Y D++
Sbjct: 149 AESEELFQQAVQVDPLLIPYQSVGPTETPPITAYDPPDGKYVDLT 193
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVS 41
+DP L+P+ + GP TPPI Y+ PDG Y D++
Sbjct: 161 VDPLLIPYQSVGPTETPPITAYDPPDGKYVDLT 193
>gi|350536921|ref|NP_001233080.1| uncharacterized protein LOC100164564 [Acyrthosiphon pisum]
gi|239792241|dbj|BAH72484.1| ACYPI005567 [Acyrthosiphon pisum]
gi|239799296|dbj|BAH70576.1| ACYPI005567 [Acyrthosiphon pisum]
Length = 197
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 66/102 (64%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R + S + +E R K W +Y+ E + ++I+ L YSQQRAL+ELR SE+LY
Sbjct: 96 RQRPIVVHSNDKLEERIVAAKAWSMYKHDEHFFNLQVINDLEYSQQRALNELREVSEDLY 155
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q A+ ID +LL GP+ TPPIENY+ PDG+Y D+S+ ++
Sbjct: 156 QAAVDIDESLLTCQLTGPVETPPIENYQSPDGEYIDISKKWD 197
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
ID +LL GP+ TPPIENY+ PDG+Y D+S+ ++
Sbjct: 161 IDESLLTCQLTGPVETPPIENYQSPDGEYIDISKKWD 197
>gi|363739973|ref|XP_003642247.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Gallus
gallus]
Length = 191
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R+LPPLS E E R L+K+W +Y+ ++ + + + I L+ +QQ AL ELRLESEELY
Sbjct: 89 RVRSLPPLSFEETERRVLLMKKWSLYKQQQDKAEKEAIQSLVEAQQEALKELRLESEELY 148
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q A++ D L PF GP +TPP+ Y+ P+G D+++ +
Sbjct: 149 QAAVRRDEELFPFERDGPNYTPPLPGYDPPEGKCIDITKVY 189
>gi|148222182|ref|NP_001088825.1| mitochondrial ribosomal protein L40 [Xenopus laevis]
gi|56270502|gb|AAH87534.1| LOC496101 protein [Xenopus laevis]
Length = 158
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 64/101 (63%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P ++ E E R+ L+K W + + KE + + ++ L+ +Q+ AL ELRLESEELY
Sbjct: 56 RVRTPPKITPEEQERRALLMKTWALSKQKEHEAENTGLESLLEAQEEALRELRLESEELY 115
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
AI DP LLP ++GP +TPPI Y PDG Y D+++ +
Sbjct: 116 NAAILTDPGLLPLESQGPCNTPPITQYNAPDGKYNDITKVY 156
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP LLP ++GP +TPPI Y PDG Y D+++ +
Sbjct: 122 DPGLLPLESQGPCNTPPITQYNAPDGKYNDITKVY 156
>gi|110757229|ref|XP_001122727.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Apis
mellifera]
Length = 202
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Query: 54 ALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLI 113
L E L +K+P L LSEE IE R L +EW Y+ + KD ++I ++
Sbjct: 89 TLAETLQNDKRPCH--------LTSLSEEEIERRRLLEREWIKYKQNQWLKDLQVIKSMV 140
Query: 114 YSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
SQ+ AL EL+ S++LY++AI+ D LP+ GP+HTPPIENY+ PDG+Y + + +
Sbjct: 141 TSQKTALKELKAVSKQLYKKAIEFDDLYLPYDVTGPVHTPPIENYDSPDGEYIETTIKYA 200
Query: 174 KE 175
E
Sbjct: 201 GE 202
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D LP+ GP+HTPPIENY+ PDG+Y + + + E
Sbjct: 164 FDDLYLPYDVTGPVHTPPIENYDSPDGEYIETTIKYAGE 202
>gi|195054896|ref|XP_001994359.1| GH21548 [Drosophila grimshawi]
gi|193896229|gb|EDV95095.1| GH21548 [Drosophila grimshawi]
Length = 189
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL +E R+ L KEW Y+ E D+++IDRL+ SQ +AL+ELR ESEELY
Sbjct: 88 RERKLTPLGTAELEQRALLKKEWARYKHDEKVADFQIIDRLVQSQNKALEELRRESEELY 147
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI++D LLP + KGP+ TPPI+NY PDGDY + +E
Sbjct: 148 QAAIEVDMKLLPVSVKGPVATPPIKNYVSPDGDYVHQAMKWE 189
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+D LLP + KGP+ TPPI+NY PDGDY + +E
Sbjct: 153 VDMKLLPVSVKGPVATPPIKNYVSPDGDYVHQAMKWE 189
>gi|387017104|gb|AFJ50670.1| 39S ribosomal protein L40, mitochondrial-like [Crotalus adamanteus]
Length = 203
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 61/101 (60%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R LPPL E E R+ + K W Y+ +E + + I L+ +Q++AL ELRLESEELY
Sbjct: 101 RVRELPPLPLEESERRAKIFKRWAAYKHRENKAEMDTIKTLVAAQEQALRELRLESEELY 160
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q AI D L PF PLHTPP YE P+G D++R +
Sbjct: 161 QAAILRDNLLFPFHRSEPLHTPPQAKYEAPEGKCNDLTRIY 201
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L PF PLHTPP YE P+G D++R +
Sbjct: 167 DNLLFPFHRSEPLHTPPQAKYEAPEGKCNDLTRIY 201
>gi|355563456|gb|EHH20018.1| 39S ribosomal protein L40, mitochondrial [Macaca mulatta]
Length = 206
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARQRPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 157 LHAEAIKRDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 165 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
>gi|346473203|gb|AEO36446.1| hypothetical protein [Amblyomma maculatum]
Length = 201
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R RALP L E + R + + W Y ++ + +++R++ +QQ+AL+ L+ SEEL
Sbjct: 98 LRHRALPVLDHEACQLREAMQRAWSTYCMRKHMNEAAMLERIVATQQKALEMLKDASEEL 157
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Y AIQ D LLP K + TPPIENYE PDG Y D ++ +
Sbjct: 158 YTAAIQADNGLLPAQFKAVVSTPPIENYEAPDGKYVDTTKKW 199
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D LLP K + TPPIENYE PDG Y D ++ +
Sbjct: 165 DNGLLPAQFKAVVSTPPIENYEAPDGKYVDTTKKW 199
>gi|402883524|ref|XP_003905264.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Papio anubis]
Length = 206
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARQRPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 157 LHAEAIKRDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 165 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
>gi|388454237|ref|NP_001253344.1| 39S ribosomal protein L40, mitochondrial [Macaca mulatta]
gi|380790745|gb|AFE67248.1| 39S ribosomal protein L40, mitochondrial [Macaca mulatta]
gi|383414829|gb|AFH30628.1| 39S ribosomal protein L40, mitochondrial precursor [Macaca mulatta]
gi|384939376|gb|AFI33293.1| 39S ribosomal protein L40, mitochondrial precursor [Macaca mulatta]
Length = 206
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARQRPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 157 LHAEAIKRDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 165 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
>gi|355784787|gb|EHH65638.1| 39S ribosomal protein L40, mitochondrial [Macaca fascicularis]
Length = 206
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARQRPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 157 LHAEAIKRDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 165 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 199
>gi|327280856|ref|XP_003225167.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Anolis
carolinensis]
Length = 200
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R + PLS E E R+ L+K+W +Y+ + + + K L+ +Q+ AL ELRLESEELY
Sbjct: 98 RVRDISPLSFEESERRALLLKKWTVYKQAQNKAEMKAAKALMEAQEEALKELRLESEELY 157
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q AIQ D L PF + P HTPP+ YE P+G D+++ +
Sbjct: 158 QAAIQRDEGLFPFERQEPTHTPPVSKYEAPEGRCHDITKVY 198
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L PF + P HTPP+ YE P+G D+++ +
Sbjct: 164 DEGLFPFERQEPTHTPPVSKYEAPEGRCHDITKVY 198
>gi|291414744|ref|XP_002723618.1| PREDICTED: nuclear localization signal containing protein deleted
in Velo-Cardio-Facial syndrome-like [Oryctolagus
cuniculus]
Length = 252
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L+K+W +Y+ +E +++ I L+ +QQ AL EL+LES E
Sbjct: 143 KARQRPQVELSFEESERRALLLKKWSLYKQQEHERERDAIRALVAAQQEALQELQLESPE 202
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
LY EAI+ DP L PF +GP +TPP+ +Y+ P+G Y D+++ +
Sbjct: 203 LYSEAIKRDPGLFPFEKEGPHYTPPVADYQPPEGRYNDITKVY 245
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ +Y+ P+G Y D+++ +
Sbjct: 211 DPGLFPFEKEGPHYTPPVADYQPPEGRYNDITKVY 245
>gi|225715090|gb|ACO13391.1| 39S ribosomal protein L40, mitochondrial precursor [Esox lucius]
Length = 203
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R+ P LS E E R+ L+KEW Y+ + Q + + + + +Q+ AL++LRLESEELY
Sbjct: 101 RVRSSPQLSFEESERRALLLKEWSRYKQTQHQAEMEAVGMAVEAQREALEQLRLESEELY 160
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
Q A++ DP L PF +GP +TPP YE P+G Y ++++ + +
Sbjct: 161 QAALRPDPLLFPFNHQGPSYTPPKAQYEAPEGKYNNITKVYTQ 203
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
DP L PF +GP +TPP YE P+G Y ++++ + +
Sbjct: 167 DPLLFPFNHQGPSYTPPKAQYEAPEGKYNNITKVYTQ 203
>gi|392883438|gb|AFM90551.1| mitochondrial ribosomal protein L40 [Callorhinchus milii]
Length = 167
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 69/103 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P L+ E IE R+ L+KEW ++ K+ +++ ++I ++ +QQ AL ELRLESEELY
Sbjct: 65 RVRDPPELTIEEIERRALLMKEWSRHKHKQHKEEKEMIQSMVEAQQEALQELRLESEELY 124
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
Q AI+ D L P +GP TPPI ++ P+G Y ++++ +++
Sbjct: 125 QAAIERDEGLFPLELQGPSFTPPIPGFQAPEGKYNNITKVYKQ 167
>gi|383854271|ref|XP_003702645.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Megachile
rotundata]
Length = 201
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 76/125 (60%)
Query: 51 RKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLID 110
R ++ I+ + + K +SR PLS E I +R +L KEW Y+ + ++ ++I
Sbjct: 76 RSGIMKPIMEIDVQAELANKKQSRDTMPLSIEEIRNRQSLEKEWAKYKKDQWLRNSRIIK 135
Query: 111 RLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSR 170
++ SQ+ AL EL+ S ELY++A++ D LP+ A GPL+TPPI +Y+ PDG+YT+ +
Sbjct: 136 SIMLSQENALKELKAASTELYEKAVEFDNQYLPYNATGPLYTPPIIDYDSPDGEYTETTV 195
Query: 171 NFEKE 175
+ E
Sbjct: 196 KYLGE 200
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D LP+ A GPL+TPPI +Y+ PDG+YT+ + + E
Sbjct: 162 FDNQYLPYNATGPLYTPPIIDYDSPDGEYTETTVKYLGE 200
>gi|195389236|ref|XP_002053283.1| GJ23425 [Drosophila virilis]
gi|194151369|gb|EDW66803.1| GJ23425 [Drosophila virilis]
Length = 189
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 68/102 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL +E R+ L K+W Y+ E D+++IDRL+ SQ + L+ELR ESEELY
Sbjct: 88 RERKLTPLGIAELEQRALLKKQWAHYKHDEKVADFQIIDRLLQSQNKTLEELRRESEELY 147
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI+ID LLP A KGP+ TPPI+NY PDGDY S +E
Sbjct: 148 QAAIEIDTKLLPVAVKGPVATPPIKNYVSPDGDYIHQSMKWE 189
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 25/37 (67%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
ID LLP A KGP+ TPPI+NY PDGDY S +E
Sbjct: 153 IDTKLLPVAVKGPVATPPIKNYVSPDGDYIHQSMKWE 189
>gi|62858953|ref|NP_001016249.1| mitochondrial ribosomal protein L40 [Xenopus (Silurana) tropicalis]
gi|134026168|gb|AAI35460.1| mitochondrial ribosomal protein L40 [Xenopus (Silurana) tropicalis]
Length = 199
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P ++ E E R+ L+K W + + +E + + + + L+ +Q+ AL ELRLESEELY
Sbjct: 97 RVRTPPQITPEEQERRALLMKTWALSKQQEHEAENRGLQSLLEAQEEALRELRLESEELY 156
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
AI DP LLP ++GP +TPP+ Y PDG Y DV++ +
Sbjct: 157 NAAILTDPGLLPLESQGPCNTPPVPQYNAPDGKYNDVTKVY 197
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP LLP ++GP +TPP+ Y PDG Y DV++ +
Sbjct: 163 DPGLLPLESQGPCNTPPVPQYNAPDGKYNDVTKVY 197
>gi|417397083|gb|JAA45575.1| Putative 39s ribosomal protein l40 [Desmodus rotundus]
Length = 206
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L K+W +Y+ +E + + + I ++ +QQ AL EL+L S+E
Sbjct: 97 KGRQRPQVELSFEEAERRALLSKKWSLYKQREHEMEREAIKSMLEAQQEALQELKLMSQE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L++EAI+ DP+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHEEAIKRDPSLFPFEREGPTYTPPISNYQPPEGRYHDITKVY 199
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPSLFPFEREGPTYTPPISNYQPPEGRYHDITKVY 199
>gi|198455414|ref|XP_001359984.2| GA18758 [Drosophila pseudoobscura pseudoobscura]
gi|198133233|gb|EAL29136.2| GA18758 [Drosophila pseudoobscura pseudoobscura]
Length = 193
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL +E R+ L K+W Y+ E D+++IDRL+ SQ +AL+ELR ESEELY
Sbjct: 92 RQRKLTPLGSAELEERALLKKQWARYKHDERVSDFQIIDRLVMSQNKALEELRRESEELY 151
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI++D LLP + KGP+ +PPI+NY PDGDY S +E
Sbjct: 152 QAAIEVDLQLLPVSLKGPVASPPIKNYASPDGDYIHQSMKWE 193
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+D LLP + KGP+ +PPI+NY PDGDY S +E
Sbjct: 157 VDLQLLPVSLKGPVASPPIKNYASPDGDYIHQSMKWE 193
>gi|387915878|gb|AFK11548.1| mitochondrial ribosomal protein L40 [Callorhinchus milii]
Length = 194
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 69/103 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P L+ E IE R+ L+KEW ++ K+ +++ ++I ++ +QQ AL ELRLESEELY
Sbjct: 92 RVRDPPELTIEEIERRALLMKEWSRHKHKQHKEEKEMIQSMVEAQQEALQELRLESEELY 151
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
Q AI+ D L P +GP TPPI ++ P+G Y ++++ +++
Sbjct: 152 QAAIERDEGLFPLELQGPSFTPPIPGFQAPEGKYNNITKVYKQ 194
>gi|195157896|ref|XP_002019830.1| GL11999 [Drosophila persimilis]
gi|194116421|gb|EDW38464.1| GL11999 [Drosophila persimilis]
Length = 193
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L PL +E R+ L K+W Y+ E D+++IDRL+ SQ +AL+ELR ESEELY
Sbjct: 92 RQRKLTPLGSAELEERALLKKQWARYKHDERVSDFQIIDRLVMSQNKALEELRRESEELY 151
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
Q AI++D LLP + KGP+ +PPI+NY PDGDY S +E
Sbjct: 152 QAAIEVDLQLLPVSLKGPVASPPIKNYASPDGDYIHQSMKWE 193
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 45
+D LLP + KGP+ +PPI+NY PDGDY S +E
Sbjct: 157 VDLQLLPVSLKGPVASPPIKNYASPDGDYIHQSMKWE 193
>gi|344294892|ref|XP_003419149.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Loxodonta
africana]
Length = 206
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L+K+W +Y+ +E + + I L+ +QQ AL ELRL S E
Sbjct: 97 KARQRPQVELSFEEAERRALLLKKWSLYKQQEHEMERDAIRSLLKAQQEALQELRLTSPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP+LLPF +GP +TPP+ NY+ P+G Y ++++ +
Sbjct: 157 LHAEAIKRDPSLLPFEREGPHYTPPVPNYQPPEGRYNNITKVY 199
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+LLPF +GP +TPP+ NY+ P+G Y ++++ +
Sbjct: 165 DPSLLPFEREGPHYTPPVPNYQPPEGRYNNITKVY 199
>gi|332262702|ref|XP_003280398.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Nomascus
leucogenys]
Length = 206
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARERPQVELTFEETERRAVLLKKWSLYKQQEHKTERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>gi|417407881|gb|JAA50533.1| Putative 39s ribosomal protein l40, partial [Desmodus rotundus]
Length = 126
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 68/101 (67%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R LS E E R+ L K+W +Y+ +E + + + I ++ +QQ AL EL+L S+EL+
Sbjct: 19 RQRPQVELSFEEAERRALLSKKWSLYKQREHEMEREAIKSMLEAQQEALQELKLMSQELH 78
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+EAI+ DP+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 79 EEAIKRDPSLFPFEREGPTYTPPISNYQPPEGRYHDITKVY 119
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 85 DPSLFPFEREGPTYTPPISNYQPPEGRYHDITKVY 119
>gi|224071860|ref|XP_002195541.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Taeniopygia
guttata]
Length = 186
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 66/101 (65%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R+LP LS E E R L+K+W +++ K+ + + I L+ SQQ AL EL+LESEELY
Sbjct: 84 RVRSLPALSPEESERRVLLLKKWCVFKQKQDEAEKNAIKALVESQQEALKELQLESEELY 143
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q AI+ D L PF +GP +TPP+ Y+ P+G D+++ +
Sbjct: 144 QAAIRRDEELFPFQREGPSYTPPLPGYDPPEGKCIDITKVY 184
>gi|355752709|gb|EHH56829.1| hypothetical protein EGM_06311 [Macaca fascicularis]
Length = 191
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 64/91 (70%)
Query: 82 EVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTL 141
E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +L+ EAI+ DP L
Sbjct: 94 EETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPKLHAEAIKRDPNL 153
Query: 142 LPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 154 FPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 184
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 150 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 184
>gi|297708258|ref|XP_002830891.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L40,
mitochondrial [Pongo abelii]
Length = 207
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 98 KARERPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 157
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 158 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 200
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 166 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 200
>gi|12858634|dbj|BAB31389.1| unnamed protein product [Mus musculus]
Length = 166
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R S E E R+ L+K W +++ +E + + I ++ +QQ AL+EL+LES E
Sbjct: 57 KSRQRPQEEHSPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAE 116
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
LY EAI+ D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 117 LYAEAIKRDTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 159
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 125 DTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 159
>gi|114685085|ref|XP_525523.2| PREDICTED: 39S ribosomal protein L40, mitochondrial isoform 3 [Pan
troglodytes]
gi|397485942|ref|XP_003814095.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Pan paniscus]
gi|410214108|gb|JAA04273.1| mitochondrial ribosomal protein L40 [Pan troglodytes]
gi|410252308|gb|JAA14121.1| mitochondrial ribosomal protein L40 [Pan troglodytes]
gi|410296756|gb|JAA26978.1| mitochondrial ribosomal protein L40 [Pan troglodytes]
gi|410335777|gb|JAA36835.1| mitochondrial ribosomal protein L40 [Pan troglodytes]
Length = 206
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARERPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>gi|3834386|gb|AAC70905.1| nuclear localization signal containing protein [Mus musculus]
Length = 206
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +++ +E + + I ++ +QQ AL+EL+LES ELY EAI+ D
Sbjct: 107 SPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAELYAEAIKRDT 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
+L PF +GP +TPPI NY+ P+G Y D+++ +++
Sbjct: 167 SLFPFEKEGPHYTPPISNYQAPEGRYNDITKVYKQ 201
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
D +L PF +GP +TPPI NY+ P+G Y D+++ +++
Sbjct: 165 DTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVYKQ 201
>gi|432094845|gb|ELK26253.1| 39S ribosomal protein L40, mitochondrial [Myotis davidii]
Length = 276
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K+R R LS E E R+ L+K+W +Y+ +E + + + I ++ +Q+ AL EL+L S+E
Sbjct: 167 KVRQRPEVELSFEEAERRALLLKKWSLYKQREHEMEREAIKSMLEAQKEALQELQLTSQE 226
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
LY EAI+ D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 227 LYAEAIKRDYSLFPFEREGPAYTPPISNYQPPEGRYHDITKVY 269
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 235 DYSLFPFEREGPAYTPPISNYQPPEGRYHDITKVY 269
>gi|255003746|ref|NP_035052.2| 39S ribosomal protein L40, mitochondrial precursor [Mus musculus]
gi|21263796|sp|Q9Z2Q5.2|RM40_MOUSE RecName: Full=39S ribosomal protein L40, mitochondrial;
Short=L40mt; Short=MRP-L40; AltName: Full=Nuclear
localization signal-containing protein deleted in
velocardiofacial syndrome homolog; Flags: Precursor
gi|20307004|gb|AAH28436.1| Mitochondrial ribosomal protein L40 [Mus musculus]
gi|74219174|dbj|BAE26725.1| unnamed protein product [Mus musculus]
gi|148665121|gb|EDK97537.1| mitochondrial ribosomal protein L40 [Mus musculus]
Length = 206
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 63/93 (67%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +++ +E + + I ++ +QQ AL+EL+LES ELY EAI+ D
Sbjct: 107 SPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAELYAEAIKRDT 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 199
>gi|291238777|ref|XP_002739304.1| PREDICTED: mitochondrial ribosomal protein, L40, putative-like
[Saccoglossus kowalevskii]
Length = 209
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 69/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LP ++ E E+R+ L KEW Y+ + ++ K+++R SQ++AL EL+ ES E
Sbjct: 106 KSRERILPEITFEESETRALLQKEWSKYKFAQHLRETKIMERFRKSQEKALQELKKESVE 165
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
LY++A+ +D LL F KGP++TP I+ Y+ P G+Y D+S++
Sbjct: 166 LYEKAMLVDSQLLTFEVKGPVNTPYIKGYDSPIGEYIDISKDV 208
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
+D LL F KGP++TP I+ Y+ P G+Y D+S++
Sbjct: 173 VDSQLLTFEVKGPVNTPYIKGYDSPIGEYIDISKDV 208
>gi|52219072|ref|NP_001004612.1| 39S ribosomal protein L40, mitochondrial [Danio rerio]
gi|51859580|gb|AAH81481.1| Zgc:103495 [Danio rerio]
Length = 200
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R+RALP + E E R+ L+KEW ++ K+ Q + + I + +Q++AL +L+LES+ELY
Sbjct: 98 RTRALPEVCFEESERRALLLKEWSRHKHKQHQMEMQEIQEALKAQKQALMQLKLESKELY 157
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
A++ D LPF GP +TPPI +YE P+G Y D++R +
Sbjct: 158 IAALRPDTDTLPFLHHGPSYTPPIADYEAPEGKYNDITRVY 198
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D LPF GP +TPPI +YE P+G Y D++R +
Sbjct: 164 DTDTLPFLHHGPSYTPPIADYEAPEGKYNDITRVY 198
>gi|380025165|ref|XP_003696349.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Apis
florea]
Length = 122
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 54 ALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLI 113
L ++L +K+P L LSEE IE R L +EW Y+ + KD ++I ++
Sbjct: 9 TLAKLLQNDKRPCH--------LTSLSEEEIEKRRLLEREWIKYKQDQWLKDLRIIKSML 60
Query: 114 YSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
SQ+ AL+EL+ S++LY+EAI+ D LP+ GP++TPPI+NY PDG+Y + + +
Sbjct: 61 ISQKTALEELKAVSKQLYKEAIEFDDLYLPYDVIGPVYTPPIKNYNSPDGEYIETTIKYV 120
Query: 174 KE 175
E
Sbjct: 121 GE 122
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D LP+ GP++TPPI+NY PDG+Y + + + E
Sbjct: 84 FDDLYLPYDVIGPVYTPPIKNYNSPDGEYIETTIKYVGE 122
>gi|426393516|ref|XP_004063065.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Gorilla
gorilla gorilla]
Length = 206
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+++W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 97 KARERPQVELTFEETERRALLLRKWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>gi|126324882|ref|XP_001379147.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Monodelphis domestica]
Length = 240
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 65/101 (64%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P + EV E R+ L+K+W +Y+ +EA+ + K I ++ +QQ AL ELR ESE LY
Sbjct: 133 RQRPEPEVPFEVSERRTLLMKKWTLYKQQEAEAEQKKIRSMLEAQQEALRELRQESELLY 192
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Q AI+ D +L PF +GP +TP Y+ P+G Y DV++ +
Sbjct: 193 QAAIRRDDSLFPFEKEGPTYTPATPGYQAPEGKYNDVTKVY 233
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TP Y+ P+G Y DV++ +
Sbjct: 199 DDSLFPFEKEGPTYTPATPGYQAPEGKYNDVTKVY 233
>gi|395858875|ref|XP_003801782.1| PREDICTED: uncharacterized protein LOC100943507 [Otolemur
garnettii]
Length = 478
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L+K W +Y+ +E + + I ++ +QQ AL EL+LES
Sbjct: 369 KARQRPQVELSFEESERRALLLKRWSLYKQREHEMERDTIRAMLEAQQEALQELQLESPV 428
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
LY EA + DP+L PF KGP +TPP+ NY+ P+G Y D+++ + +
Sbjct: 429 LYTEATKRDPSLFPFETKGPDYTPPVSNYQPPEGRYNDITKVYTQ 473
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
DP+L PF KGP +TPP+ NY+ P+G Y D+++ + +
Sbjct: 437 DPSLFPFETKGPDYTPPVSNYQPPEGRYNDITKVYTQ 473
>gi|427786751|gb|JAA58827.1| Putative mitochondrial ribosomal protein l28 [Rhipicephalus
pulchellus]
Length = 201
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R RALP L E + R + + W IY ++ Q + +++R++ +Q++AL+ L+ SE+L
Sbjct: 98 LRHRALPVLDHETCQLREAMQRAWSIYCMRKHQNEAAMLERIVATQEKALEMLKEASEDL 157
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Y AIQ D L P K + TPPI+NYE PDG Y D ++ +
Sbjct: 158 YNAAIQTDNGLFPAQFKAIVSTPPIKNYEPPDGKYVDTTKKW 199
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L P K + TPPI+NYE PDG Y D ++ +
Sbjct: 165 DNGLFPAQFKAIVSTPPIKNYEPPDGKYVDTTKKW 199
>gi|321456854|gb|EFX67952.1| hypothetical protein DAPPUDRAFT_203518 [Daphnia pulex]
Length = 216
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 81 EEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPT 140
E ++ R N++K W Y+ ++ ++ K++DR+ SQ RAL++LR SE LY AIQ D T
Sbjct: 125 EPLLRQRQNILKAWCTYKYQQHLQEMKMVDRIGTSQSRALEQLREISENLYIGAIQTDST 184
Query: 141 LLPFAAKGPLHTPPIENYECPDGDYTD 167
LLPF A GP TPP+ NYE DG+Y D
Sbjct: 185 LLPFTAVGPSSTPPLNNYEV-DGEYMD 210
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTD 39
D TLLPF A GP TPP+ NYE DG+Y D
Sbjct: 182 DSTLLPFTAVGPSSTPPLNNYEV-DGEYMD 210
>gi|3834384|gb|AAC70904.1| nuclear localization signal containing protein deleted in
Velo-Cardio-Facial syndrome [Homo sapiens]
Length = 206
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+EL+LES +
Sbjct: 97 KARERPQVELTFEETERRALLLKKWSLYKQQEHKMERDTIRAMLEAQQEALEELQLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>gi|355567133|gb|EHH23512.1| hypothetical protein EGK_06987 [Macaca mulatta]
Length = 191
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R + PP E E R+ L+K+W + + +E + + I ++ +QQ AL+ELRLES +L+
Sbjct: 86 RPQVEPPFEE--TERRALLLKKWSLCKQQEHKMERDTIRAMLEAQQEALEELRLESPKLH 143
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
EAI+ DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 144 AEAIKRDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 184
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 150 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 184
>gi|67846004|ref|NP_001020036.1| 39S ribosomal protein L40, mitochondrial precursor [Rattus
norvegicus]
gi|124028628|sp|P83565.2|RM40_RAT RecName: Full=39S ribosomal protein L40, mitochondrial;
Short=L40mt; Short=MRP-L40; Flags: Precursor
gi|66912007|gb|AAH97472.1| Mitochondrial ribosomal protein L40 [Rattus norvegicus]
gi|149019814|gb|EDL77962.1| rCG36810 [Rattus norvegicus]
Length = 206
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +Y+ +E + + I ++ +QQ AL++L+LES ELY EAI+ D
Sbjct: 107 SFEESERRALLLKRWALYKQQEHEMERDAIRAMLEAQQEALEQLKLESTELYAEAIKRDT 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 199
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 165 DTSLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 199
>gi|26638659|ref|NP_003767.2| 39S ribosomal protein L40, mitochondrial [Homo sapiens]
gi|21263795|sp|Q9NQ50.1|RM40_HUMAN RecName: Full=39S ribosomal protein L40, mitochondrial;
Short=L40mt; Short=MRP-L40; AltName: Full=Nuclear
localization signal-containing protein deleted in
velocardiofacial syndrome; AltName: Full=Up-regulated in
metastasis; Flags: Precursor
gi|9581768|emb|CAC00535.1| URIM protein [Homo sapiens]
gi|16307235|gb|AAH09707.1| Mitochondrial ribosomal protein L40 [Homo sapiens]
gi|47678595|emb|CAG30418.1| NLVCF [Homo sapiens]
gi|109451404|emb|CAK54563.1| MRPL40 [synthetic construct]
gi|109452000|emb|CAK54862.1| MRPL40 [synthetic construct]
gi|119623447|gb|EAX03042.1| mitochondrial ribosomal protein L40 [Homo sapiens]
gi|123981104|gb|ABM82381.1| mitochondrial ribosomal protein L40 [synthetic construct]
gi|123981500|gb|ABM82579.1| mitochondrial ribosomal protein L40 [synthetic construct]
gi|123995915|gb|ABM85559.1| mitochondrial ribosomal protein L40 [synthetic construct]
gi|193784806|dbj|BAG53959.1| unnamed protein product [Homo sapiens]
gi|261859656|dbj|BAI46350.1| mitochondrial ribosomal protein L40 [synthetic construct]
Length = 206
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+EL+LES +
Sbjct: 97 KARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>gi|348585327|ref|XP_003478423.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Cavia
porcellus]
Length = 205
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 66/103 (64%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L E E R+ L+K+W +Y+ +E + I ++ +QQ+AL EL+LES E
Sbjct: 97 KSRQRPQVELPFEESERRALLLKKWSVYKQQEHDMERDAIRAMLEAQQKALQELKLESPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
LY EAI+ DP L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 157 LYAEAIKRDPRLFPFEKEGPNYTPPISDYQPPEGRYNDITKVY 199
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 165 DPRLFPFEKEGPNYTPPISDYQPPEGRYNDITKVY 199
>gi|296191340|ref|XP_002743584.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Callithrix jacchus]
Length = 207
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+ELRLES +
Sbjct: 98 KTRQRPQVELSFEETERRALLLKKWSLYKQQEHEMERDTIRAMLEAQQEALEELRLESPK 157
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EA++ D L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 158 LHAEAVKRDSNLFPFEREGPHYTPPIPNYQPPEGRYNDITKVY 200
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 166 DSNLFPFEREGPHYTPPIPNYQPPEGRYNDITKVY 200
>gi|431904441|gb|ELK09826.1| 39S ribosomal protein L40, mitochondrial [Pteropus alecto]
Length = 206
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K+R R LS E E R+ L+K+W +Y+ +E + + I ++ +QQ AL EL+L S E
Sbjct: 97 KVRQRPQVELSFEESERRALLLKKWSLYKQQEHKMERDAIKSMLKAQQEALQELQLTSPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP+L PF +GP +TPP+ +Y+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPSLFPFEREGPDYTPPVSSYQPPEGRYHDITKVY 199
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPP+ +Y+ P+G Y D+++ +
Sbjct: 165 DPSLFPFEREGPDYTPPVSSYQPPEGRYHDITKVY 199
>gi|351715453|gb|EHB18372.1| 39S ribosomal protein L40, mitochondrial [Heterocephalus glaber]
Length = 206
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 61/88 (69%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K+W +Y+ +E + + I ++ +QQ+AL EL+LES ELY EAI+ DP L PF
Sbjct: 112 EQRALLLKKWALYKQQEHEMERDAIRAMLEAQQKALQELKLESPELYTEAIKRDPRLFPF 171
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+GP +TPP+ +Y+ P+G Y D ++ +
Sbjct: 172 EKEGPHYTPPVPDYQPPEGRYNDTTKVY 199
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ +Y+ P+G Y D ++ +
Sbjct: 165 DPRLFPFEKEGPHYTPPVPDYQPPEGRYNDTTKVY 199
>gi|297269395|ref|XP_001097160.2| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Macaca
mulatta]
Length = 293
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Query: 77 PPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQ 136
PP E E R+ L+K+W + + +E + + I ++ +Q+ AL+ELRLES +L+ EAI+
Sbjct: 193 PPFEE--TERRALLLKKWSLCKQQERKMERDTISAMLEAQREALEELRLESPKLHAEAIK 250
Query: 137 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 251 RDPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 286
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y+DV++ +
Sbjct: 252 DPNLFPFEREGPCYTPPIPNYQPPEGKYSDVTKVY 286
>gi|281353784|gb|EFB29368.1| hypothetical protein PANDA_009387 [Ailuropoda melanoleuca]
Length = 187
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L E E R+ L+K+W +Y+ +E +K+ I ++ SQQ AL EL+L S E
Sbjct: 78 KARQRPHVELPFEESERRALLLKKWSLYKHQEHEKERHAIRSMLESQQEALQELQLMSPE 137
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EA + DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 138 LHAEATKQDPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 180
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 146 DPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 180
>gi|301770443|ref|XP_002920653.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 206
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L E E R+ L+K+W +Y+ +E +K+ I ++ SQQ AL EL+L S E
Sbjct: 97 KARQRPHVELPFEESERRALLLKKWSLYKHQEHEKERHAIRSMLESQQEALQELQLMSPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EA + DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 157 LHAEATKQDPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 199
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 199
>gi|340714530|ref|XP_003395780.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Bombus
terrestris]
Length = 203
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 68 RKKIRSRALP-PLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
+K+ R+ LP LSEE +E R L +EW Y+ ++ KD ++ ++ SQ+ AL EL+
Sbjct: 95 QKENRACHLPVSLSEEEMERRKLLEREWSRYKQEQWLKDLHVMKSIMVSQEIALKELKAV 154
Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
S +LY++A++ D + +P++A GP++TPPIE+++ PDG+Y + + + E
Sbjct: 155 SMQLYKKAVEFDDSFIPYSATGPVYTPPIEDFDSPDGEYIETTVKYVGE 203
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D + +P++A GP++TPPIE+++ PDG+Y + + + E
Sbjct: 165 FDDSFIPYSATGPVYTPPIEDFDSPDGEYIETTVKYVGE 203
>gi|350411106|ref|XP_003489242.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Bombus
impatiens]
Length = 203
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Query: 72 RSRALP-PLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
R+ LP LSEE IE R L ++W Y++ + KD K++ ++ SQ+ AL EL+ S++L
Sbjct: 99 RTCHLPVSLSEEQIERRKLLERKWSRYKNDQWLKDVKVMKSIMVSQEIALKELKAVSKQL 158
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
Y++A++ D + +P++ GP++TPPI++++ PDG+Y + + + E
Sbjct: 159 YKKAVEFDDSFVPYSVTGPVYTPPIKDFDSPDGEYIETTVKYAGE 203
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 47
D + +P++ GP++TPPI++++ PDG+Y + + + E
Sbjct: 165 FDDSFVPYSVTGPVYTPPIKDFDSPDGEYIETTVKYAGE 203
>gi|345791417|ref|XP_534762.3| PREDICTED: 39S ribosomal protein L40, mitochondrial [Canis lupus
familiaris]
Length = 206
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L E E R+ L+K+W +Y+ +E +K+ I ++ SQQ AL+EL+L S E
Sbjct: 97 KTRQRPKVELPFEESERRALLLKKWSLYKHQEHEKERDAITSMLESQQEALEELKLISPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L++EA + DP L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 157 LHEEATKRDPNLFPFEREGPDYTPPISSYQPPEGRYHDITKVY 199
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEREGPDYTPPISSYQPPEGRYHDITKVY 199
>gi|194228530|ref|XP_001488512.2| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Equus
caballus]
Length = 241
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K+W +Y+ +E + + I ++ +QQ AL EL+L S EL++EAI+ DP L PF
Sbjct: 147 ERRALLLKKWSLYKQREHEMERDTIRSMLEAQQEALQELQLMSPELHEEAIKRDPCLFPF 206
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 207 EREGPDYTPPVSNYQPPEGRYQDITKVY 234
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 200 DPCLFPFEREGPDYTPPVSNYQPPEGRYQDITKVY 234
>gi|343780952|ref|NP_001230489.1| 39S ribosomal protein L40, mitochondrial [Sus scrofa]
Length = 162
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K W +Y+ +E + + I L+ +Q+ AL ELRL S EL+ EA + DP+L PF
Sbjct: 68 ERRALLLKRWSLYKQREHEMERSAIRSLLEAQEEALQELRLSSPELHAEATKRDPSLFPF 127
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 128 ERQGPDYTPPISDYQPPEGRYQDITKVY 155
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 121 DPSLFPFERQGPDYTPPISDYQPPEGRYQDITKVY 155
>gi|343780950|ref|NP_001230488.1| 39S ribosomal protein L40, mitochondrial isoform 1 [Sus scrofa]
Length = 206
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K W +Y+ +E + + I L+ +Q+ AL ELRL S EL+ EA + DP+L PF
Sbjct: 112 ERRALLLKRWSLYKQREHEMERSAIRSLLEAQEEALQELRLSSPELHAEATKRDPSLFPF 171
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 172 ERQGPDYTPPISDYQPPEGRYQDITKVY 199
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPPI +Y+ P+G Y D+++ +
Sbjct: 165 DPSLFPFERQGPDYTPPISDYQPPEGRYQDITKVY 199
>gi|341891882|gb|EGT47817.1| hypothetical protein CAEBREN_04312 [Caenorhabditis brenneri]
Length = 187
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 59/101 (58%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R + LS E I+ R+ +K++ R QKD I I SQ++AL EL+ S ELY
Sbjct: 85 RRRPVIELSMEQIDERAIALKDYTRSRIALQQKDDAWIRGAIESQRKALVELKKLSPELY 144
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
AIQ P LP GP TPPI+NYE PDGDY D +RN+
Sbjct: 145 NAAIQPAPNDLPLTIHGPTLTPPIKNYEAPDGDYIDTTRNW 185
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 11 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
P LP GP TPPI+NYE PDGDY D +RN+
Sbjct: 152 PNDLPLTIHGPTLTPPIKNYEAPDGDYIDTTRNW 185
>gi|410977174|ref|XP_003994985.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Felis catus]
Length = 206
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L E E R+ L+K+W +Y+ +E + + I ++ +QQ AL EL+L S E
Sbjct: 97 KARQRPHMELPFEESERRALLLKKWSLYKHREHEMERDAIKSMLEAQQEALQELQLLSPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EA + DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 157 LHAEATKRDPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 199
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPDYTPPVSNYQPPEGRYHDITKVY 199
>gi|355704357|gb|AES02200.1| mitochondrial ribosomal protein L40 [Mustela putorius furo]
Length = 205
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 72 RSRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
++R PP L E E R+ L+K+W +Y+ +E +K+ I ++ SQQ AL EL+L S E
Sbjct: 97 KARQRPPVELPFEESERRALLLKKWSLYKHQEHEKERDAIRTMLKSQQEALQELQLMSPE 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EA + D +L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 157 LHAEATKRDLSLFPFEREGPDYTPPVSNYQPPEGRYHDITKVY 199
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 165 DLSLFPFEREGPDYTPPVSNYQPPEGRYHDITKVY 199
>gi|440899630|gb|ELR50905.1| 39S ribosomal protein L40, mitochondrial, partial [Bos grunniens
mutus]
Length = 188
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K+W +Y+ +E + + I L+ +Q+ AL EL L + EL+ EA + DP+L PF
Sbjct: 100 ERRALLLKKWSLYKQREHELERAAIASLLEAQREALQELELTAPELHAEATKRDPSLFPF 159
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNF 172
+GP +TPPI NY+ P+G Y D+++ +
Sbjct: 160 ERQGPDYTPPIANYQPPEGRYQDITKVY 187
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 153 DPSLFPFERQGPDYTPPIANYQPPEGRYQDITKVY 187
>gi|426247977|ref|XP_004023506.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L40,
mitochondrial-like [Ovis aries]
Length = 311
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R+ L+K+W +Y+ +E + + I L+ +Q+ AL EL L + EL+ EA + DP+L PF
Sbjct: 217 ERRALLLKKWSLYKQREHELERAAIASLLEAQREALRELELTAPELHAEATKRDPSLFPF 276
Query: 145 AAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
+GP +TPPI NY+ P+G Y D+++ + +
Sbjct: 277 ERQGPDYTPPIANYQPPEGRYQDITKVYTQ 306
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
DP+L PF +GP +TPPI NY+ P+G Y D+++ + +
Sbjct: 270 DPSLFPFERQGPDYTPPIANYQPPEGRYQDITKVYTQ 306
>gi|395518479|ref|XP_003763388.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Sarcophilus
harrisii]
Length = 186
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 76 LPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAI 135
LPP E E R L+++W Y+ +E + + I ++ +QQ AL ELRLESE+LYQ A
Sbjct: 89 LPP---EDSERRIFLMQKWAFYKQQEQEAERGKIASMLEAQQEALRELRLESEQLYQAAA 145
Query: 136 QIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ D L PF +GP +TP Y+ P+G Y DV++ +
Sbjct: 146 RRDEGLFPFEKEGPSYTPATPGYQAPEGKYNDVTKVY 182
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D L PF +GP +TP Y+ P+G Y DV++ +
Sbjct: 148 DEGLFPFEKEGPSYTPATPGYQAPEGKYNDVTKVY 182
>gi|405959767|gb|EKC25761.1| 39S ribosomal protein L40, mitochondrial [Crassostrea gigas]
Length = 181
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 62/100 (62%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R+R L+ E R +L K+W +Y K+ + I++ AL ELR ESEELY
Sbjct: 58 RTRENTELTREEKLKRFHLEKKWCVYSYKQYKAVCGQINQATKFAAEALAELRKESEELY 117
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRN 171
+AIQ DP++L ++ GP TPPI+NY+ PDG+Y +V+++
Sbjct: 118 VQAIQEDPSILSYSKSGPTETPPIKNYQFPDGEYNEVTKS 157
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 27/34 (79%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRN 43
DP++L ++ GP TPPI+NY+ PDG+Y +V+++
Sbjct: 124 DPSILSYSKSGPTETPPIKNYQFPDGEYNEVTKS 157
>gi|296478314|tpg|DAA20429.1| TPA: mitochondrial ribosomal protein L40-like [Bos taurus]
Length = 206
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 73 SRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R PP L E E R+ L+K+W +Y+ +E + + I L+ +Q+ AL EL L + EL
Sbjct: 98 ARQRPPVELPFEESERRALLLKKWSLYKQREHELERAAIASLLEAQREALQELELTAPEL 157
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ EA + D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 158 HAEATKRDSSLFPFERQGPDYTPPIANYQPPEGRYQDITKVY 199
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DSSLFPFERQGPDYTPPIANYQPPEGRYQDITKVY 199
>gi|339233424|ref|XP_003381829.1| WD repeat domain phosphoinositide-interacting protein 4
[Trichinella spiralis]
gi|316979310|gb|EFV62117.1| WD repeat domain phosphoinositide-interacting protein 4
[Trichinella spiralis]
Length = 476
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 78 PLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQI 137
P+ E +E++ +K+ Y++K+ + I ++ SQ +AL+EL+LESE LY+ A+++
Sbjct: 368 PIEELTVENK---VKDNIQYQTKQYNAHHNQIRVMMKSQLKALEELKLESETLYRSALEV 424
Query: 138 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDR 179
+P L+P GP+ TPPI YE PDGDY + + E + +R
Sbjct: 425 NPDLIPCVFDGPVSTPPIPGYETPDGDYKETTLLLENHFIER 466
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDR 51
++P L+P GP+ TPPI YE PDGDY + + E + +R
Sbjct: 424 VNPDLIPCVFDGPVSTPPIPGYETPDGDYKETTLLLENHFIER 466
>gi|432873448|ref|XP_004072221.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Oryzias
latipes]
Length = 203
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 72/103 (69%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R RA P LS E ESR+ L+K+W Y+ ++ + + + I+ + +Q+ AL+EL+LESEELY
Sbjct: 101 RKRAAPDLSFEESESRALLLKDWSRYKQQQHKAEVEAIELALEAQREALEELKLESEELY 160
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
Q A++ DP L PF +GP +TPPI NY+ PDG Y D+++ + +
Sbjct: 161 QSALKPDPHLFPFTREGPSYTPPIPNYDAPDGKYNDITKVYTQ 203
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
DP L PF +GP +TPPI NY+ PDG Y D+++ + +
Sbjct: 167 DPHLFPFTREGPSYTPPIPNYDAPDGKYNDITKVYTQ 203
>gi|308477336|ref|XP_003100882.1| hypothetical protein CRE_16175 [Caenorhabditis remanei]
gi|308264456|gb|EFP08409.1| hypothetical protein CRE_16175 [Caenorhabditis remanei]
Length = 187
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 69 KKIRSRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
K I R PP L+ E I+ R+ +K++ R ++D K I I SQ++AL EL+
Sbjct: 80 KNIEERRRPPTQLTLEEIDERAIALKDYSRSRLALQREDDKWIRGAIESQRKALAELKKL 139
Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
S ELY A+Q LP GP TPPI+NYE PDGDY D +RN+
Sbjct: 140 SPELYTAAVQPAANDLPLTIHGPSLTPPIKNYEAPDGDYIDTTRNW 185
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
LP GP TPPI+NYE PDGDY D +RN+
Sbjct: 155 LPLTIHGPSLTPPIKNYEAPDGDYIDTTRNW 185
>gi|268571025|ref|XP_002640907.1| Hypothetical protein CBG00465 [Caenorhabditis briggsae]
Length = 187
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 69 KKIRSRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
K I R PP LS E ++ R+ +K++ R ++D I I SQ++AL EL+
Sbjct: 80 KNIEERRRPPTELSLEQVDERAVALKDYSRSRQALQREDDAWIRGAIESQRKALSELKKL 139
Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
S LY A+Q P LP +GP TPPI+NY PDGDY D +RN+
Sbjct: 140 SPTLYTAAVQPAPNDLPLTIQGPSLTPPIKNYVAPDGDYIDTTRNW 185
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 11 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
P LP +GP TPPI+NY PDGDY D +RN+
Sbjct: 152 PNDLPLTIQGPSLTPPIKNYVAPDGDYIDTTRNW 185
>gi|17553554|ref|NP_497138.1| Protein MRPL-40 [Caenorhabditis elegans]
gi|351058599|emb|CCD66086.1| Protein MRPL-40 [Caenorhabditis elegans]
Length = 189
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R L+ E I+ R+ +K++ R Q+D I I SQ++AL+EL++ ELY
Sbjct: 87 RRRPRTELTLEQIDERAIALKDYTRSRLALQQEDDAWIRGAIESQRKALNELKMLKLELY 146
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ A+Q LP +GP TPPI NYE PDGDY D +RN+
Sbjct: 147 EAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
LP +GP TPPI NYE PDGDY D +RN+
Sbjct: 157 LPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187
>gi|391340059|ref|XP_003744363.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Metaseiulus occidentalis]
Length = 192
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R LP L ++ R +LI+ W +S + + K+I +++ Q AL++L+ LY
Sbjct: 90 RKRQLPDLPPNIVSFRQDLIRVWSRVQSAYYKDETKIISAMLHCQNAALEDLKEADPGLY 149
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
A+Q D +L+PF TPP++NY+ PDG YT+ ++ +
Sbjct: 150 DAAMQPDLSLIPFKIDAVTETPPLKNYQPPDGKYTETTKKW 190
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L+PF TPP++NY+ PDG YT+ ++ +
Sbjct: 156 DLSLIPFKIDAVTETPPLKNYQPPDGKYTETTKKW 190
>gi|443710022|gb|ELU04409.1| hypothetical protein CAPTEDRAFT_153490 [Capitella teleta]
Length = 172
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R LS + ESR+ LIK W ++ ++ + + I + SQ AL +L+ S LY
Sbjct: 70 RLRETEALSFDEAESRALLIKRWSRFKWRQLFLEEQAIKSAMDSQAEALRQLKEISPSLY 129
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
AIQID LLPF+ KGP TPP++ + DG+Y D + ++K
Sbjct: 130 DSAIQIDEGLLPFSRKGPTETPPLKGHVYIDGEYLDTTEKYDK 172
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
ID LLPF+ KGP TPP++ + DG+Y D + ++K
Sbjct: 135 IDEGLLPFSRKGPTETPPLKGHVYIDGEYLDTTEKYDK 172
>gi|149049938|gb|EDM02262.1| rCG63432 [Rattus norvegicus]
Length = 76
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%)
Query: 109 IDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDV 168
I ++ +QQ AL++L+LES ELY EAI+ D +L PF +GP +TPP+ NY+ P+G Y D+
Sbjct: 6 IRAMLEAQQEALEQLKLESTELYAEAIKRDTSLFPFEKEGPHYTPPVPNYQAPEGRYNDI 65
Query: 169 SRNF 172
++ +
Sbjct: 66 TKVY 69
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 35 DTSLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 69
>gi|348527154|ref|XP_003451084.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Oreochromis niloticus]
Length = 203
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 69/103 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R P LS E E R+ L+KEW Y+ K+ + + ++ + +Q+ AL+EL+LESEELY
Sbjct: 101 RERTAPRLSFEESEGRALLLKEWCRYKQKQHMAEVEAVELALEAQREALEELKLESEELY 160
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
+ A++ DP L+PF +GP +TP I NY+ PDG Y D+++ + +
Sbjct: 161 RAALKPDPLLIPFVHEGPTYTPAIPNYDAPDGKYNDITKVYTQ 203
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
DP L+PF +GP +TP I NY+ PDG Y D+++ + +
Sbjct: 167 DPLLIPFVHEGPTYTPAIPNYDAPDGKYNDITKVYTQ 203
>gi|395744573|ref|XP_003778128.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L40,
mitochondrial-like [Pongo abelii]
Length = 232
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
LS E E R+ L+ EW +Y+ +E D I ++ +QQ AL EL LES E E I+ D
Sbjct: 102 LSLEESEWRALLLXEWSLYKQREYTMDRDTIKAVLGTQQEALQELPLESPEFPTETIKWD 161
Query: 139 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
++ PF +GP +T + NY+ P G Y D+++ +
Sbjct: 162 HSMFPFEWEGPDYTLWVSNYQPPKGRYNDITKMY 195
>gi|410923172|ref|XP_003975056.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Takifugu
rubripes]
Length = 201
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 69/103 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R +P LS E E R+ L+K+W Y+ ++ + + ++ + +Q+ AL+EL+LESEELY
Sbjct: 99 RERTVPKLSFEESERRALLLKDWSRYKQEQHMAEVQAVENALEAQREALEELKLESEELY 158
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
+ A++ D +L PF +GP++TPP YE PDG Y D++R + +
Sbjct: 159 RAALKPDLSLFPFTHEGPVYTPPNPKYEAPDGKYNDITRVYTQ 201
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
D +L PF +GP++TPP YE PDG Y D++R + +
Sbjct: 165 DLSLFPFTHEGPVYTPPNPKYEAPDGKYNDITRVYTQ 201
>gi|229366768|gb|ACQ58364.1| 39S ribosomal protein L40, mitochondrial precursor [Anoplopoma
fimbria]
Length = 202
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 67/101 (66%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R+ P LS E E R+ L+KEW Y+ ++ + + ++ + +Q+ AL+EL+LESEELY
Sbjct: 100 RERSAPRLSFEESEGRALLLKEWCRYKQEQHMAEVQAVELALEAQREALEELKLESEELY 159
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ A++ DP L PF +GP +TPP YE PDG Y ++++ +
Sbjct: 160 KAALKPDPLLFPFTHEGPAYTPPKTKYEAPDGKYNNITKVY 200
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPP YE PDG Y ++++ +
Sbjct: 166 DPLLFPFTHEGPAYTPPKTKYEAPDGKYNNITKVY 200
>gi|170580735|ref|XP_001895386.1| hypothetical protein Bm1_19655 [Brugia malayi]
gi|158597686|gb|EDP35765.1| hypothetical protein Bm1_19655 [Brugia malayi]
Length = 194
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
LSE+ + R+ L E+ Y +K A D + I + + Q+ AL +L++ S ELY+ A++ D
Sbjct: 98 LSEDEKDERAALEMEYKRYLNKLAVMDTRWIAKSVQKQENALQKLKMLSPELYKAALEPD 157
Query: 139 PTLLP-FAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L F +GP TPPIE+YE PDG Y DVS+ +
Sbjct: 158 ECFLQNFVYRGPTLTPPIESYEPPDGHYIDVSKKW 192
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 16 FAAKGPLHTPPIENYECPDGDYTDVSRNF 44
F +GP TPPIE+YE PDG Y DVS+ +
Sbjct: 164 FVYRGPTLTPPIESYEPPDGHYIDVSKKW 192
>gi|72109055|ref|XP_780820.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 187
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query: 82 EVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTL 141
E E R+ L K W Y+ ++ + I + I SQ +AL+ELRLESEELYQ AIQ DP L
Sbjct: 94 ETSEERARLQKAWSRYKFQQHVTETNTIKKSIRSQTKALEELRLESEELYQAAIQRDPRL 153
Query: 142 LPFAAKGPLHTPPIENYEC--PDGDYTDVSRNFE 173
P GP +TPP+ +Y PDGDY DV++ ++
Sbjct: 154 FPLLITGPTYTPPVTDYSAVSPDGDYIDVTKQYK 187
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 10 DPTLLPFAAKGPLHTPPIENYEC--PDGDYTDVSRNFE 45
DP L P GP +TPP+ +Y PDGDY DV++ ++
Sbjct: 150 DPRLFPLLITGPTYTPPVTDYSAVSPDGDYIDVTKQYK 187
>gi|397509200|ref|XP_003825023.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L40,
mitochondrial-like [Pan paniscus]
Length = 259
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
S E E R+ L+ EW +Y+ +E D I ++ +QQ AL EL LE E E I+ D
Sbjct: 129 FSLEKSEWRALLLXEWSLYKQREHTMDRDTIKAVLGTQQEALQELPLEYPEFPTETIKWD 188
Query: 139 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
++ PF +GP +T + NY+ P G Y D+++ + +
Sbjct: 189 CSMFPFEWEGPDYTLWVSNYQPPKGRYNDITKMYTQ 224
>gi|225711002|gb|ACO11347.1| 39S ribosomal protein L40, mitochondrial precursor [Caligus
rogercresseyi]
Length = 210
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 74 RALPPLSE-EVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQ 132
R + P+ E E IE R+ ++K+W + +++ ++D + R++ ++ AL+EL+ S Y
Sbjct: 80 RMVRPVPEAEEIERRALILKDWNRHYTRQHRRDMDNLSRILEARSEALEELKGVSPVFYS 139
Query: 133 EAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK 191
A+ +D +L A +GP T P+ DG Y+DV++ + Y D KA +E+++ K +
Sbjct: 140 AALSMDDSLEGLAWRGPPTTLPLGKEHLVDGQYSDVTKECQIHYDDMKAFMEQLVQKKR 198
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 4 SVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK 63
S ++D +L A +GP T P+ DG Y+DV++ + Y D KA +E+++ K +
Sbjct: 139 SAALSMDDSLEGLAWRGPPTTLPLGKEHLVDGQYSDVTKECQIHYDDMKAFMEQLVQKKR 198
>gi|403304248|ref|XP_003942718.1| PREDICTED: 39S ribosomal protein L40, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 206
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 69/105 (65%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R LS E E R+ L+K+W +Y+ +E + + I ++ +Q+ AL+ELRLES +
Sbjct: 97 KARQRPQVELSFEETERRALLLKKWSVYKQQEHEMERDTIRAMLEAQEEALEELRLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 174
L+ EAI+ D L PF +GP +TPPI NY+ P+G Y+D+++ + +
Sbjct: 157 LHAEAIKRDSNLFPFEREGPHYTPPIPNYQPPEGRYSDITKVYTQ 201
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK 46
D L PF +GP +TPPI NY+ P+G Y+D+++ + +
Sbjct: 165 DSNLFPFEREGPHYTPPIPNYQPPEGRYSDITKVYTQ 201
>gi|229367572|gb|ACQ58766.1| 39S ribosomal protein L40, mitochondrial precursor [Anoplopoma
fimbria]
Length = 202
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R R+ P LS E E R+ L+KEW Y+ ++ + + ++ + +Q+ AL+EL+LESEELY
Sbjct: 100 RERSAPRLSFEESEGRALLLKEWCRYKQEQHMAEVQAVELALEAQREALEELKLESEELY 159
Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ A++ DP L PF +GP + PP YE PDG Y ++++ +
Sbjct: 160 KAALKPDPLLFPFTHEGPAYIPPKTKYEAPDGKYNNITKVY 200
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP + PP YE PDG Y ++++ +
Sbjct: 166 DPLLFPFTHEGPAYIPPKTKYEAPDGKYNNITKVY 200
>gi|198437338|ref|XP_002122937.1| PREDICTED: similar to GL11999 [Ciona intestinalis]
Length = 194
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
+SE +E R+ L KEW + ++ + K + L+ Q++A+ EL+ ES+ELY+ A++ D
Sbjct: 87 ISESELERRALLEKEWARFILQQRNAERKRLRTLMLEQEKAMFELKQESQELYEAALKPD 146
Query: 139 PTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
++LPF GP+ T P++ Y P G Y S F
Sbjct: 147 LSILPFTCSGPVETLPLKEYLMPLGAYVHNSAPF 180
>gi|225714514|gb|ACO13103.1| 39S ribosomal protein L40, mitochondrial precursor [Lepeophtheirus
salmonis]
Length = 208
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 73 SRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQ 132
SRA+ E E R+ L+KEW + ++ ++ ++ ++ S++ AL+EL+ SE LY
Sbjct: 80 SRAIADAEE--TERRALLLKEWNRHCTRSYFRNMDNLNTILQSREEALEELKSISEPLYI 137
Query: 133 EAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK 191
+ +D L GP TPP+ DG YTD+++ ++ Y D K +E+++ K +
Sbjct: 138 STLSLDSGLTNIQWTGPPLTPPLGKEHLVDGKYTDITKEYQVHYDDMKVFMEQLVQKKR 196
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 8 AIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK 63
++D L GP TPP+ DG YTD+++ ++ Y D K +E+++ K +
Sbjct: 141 SLDSGLTNIQWTGPPLTPPLGKEHLVDGKYTDITKEYQVHYDDMKVFMEQLVQKKR 196
>gi|346467879|gb|AEO33784.1| hypothetical protein [Amblyomma maculatum]
Length = 200
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R RALP L E + R + + W Y ++ + +++R++ +QQ+AL+ L+ SEEL
Sbjct: 98 LRHRALPVLDHEACQLREAMQRAWSTYCMRKHMNEAAMLERIVATQQKALEMLKDASEEL 157
Query: 131 YQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
Y AIQ D LLP K + TP + + P Y D ++ +
Sbjct: 158 YTAAIQADNGLLPAQFKAVVSTPLLRITKHPX-XYVDTTKKW 198
>gi|449671865|ref|XP_004207585.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Hydra
magnipapillata]
Length = 178
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 23 HTPPIENYECPDGDYTDVSRNFE-KEYRDRKAALEEILNKNKKPH--QRKKIRSRALPPL 79
H+P ++ + P D + R E +E + RK + ++ + PH R R L
Sbjct: 30 HSPNLKKKQAPQLDQKKLQRQKELEEAKLRKQIITPPIDPDSVPHPFWFNADRQRQSAIL 89
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
SE+ +E R ++K+W + + I + + AL EL+ ESE LY +AI +D
Sbjct: 90 SEKELEERDLILKDWSRLQMNNHMACLQSIKIKVKCRTNALQELKKESEFLYNQAILVDR 149
Query: 140 TLLPFAAKGPLHTPPIENYECPD 162
+ P GP+ TPP++ YE PD
Sbjct: 150 QMFPLTLVGPVETPPLDGYEAPD 172
>gi|358341969|dbj|GAA37264.2| 39S ribosomal protein L40 mitochondrial [Clonorchis sinensis]
Length = 225
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 30/165 (18%)
Query: 42 RNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKE 101
+ F ++ R K E L +++ + + R R LSE ++ R+ L+K+WG Y++
Sbjct: 36 KRFNRQQRQLKPVAE--LEGDRQLFKELEARRRQPVDLSENELDRRAVLLKQWGRYQTNV 93
Query: 102 AQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFA---------------- 145
A+ +++ R + +QQRALD L L S ELY+ AIQ P LP
Sbjct: 94 AKTEFQQFSRAMRAQQRALDWLYLTSPELYKAAIQ--PFYLPTTYTTEGEDDCVQDILGR 151
Query: 146 AKGPLHTPPI---------ENYECPDGDYTDVSRNFEKEYR-DRK 180
+GP +T P E+YE PDG+ D + F E+ DRK
Sbjct: 152 IQGPYYTAPRIHGGLVDCPEDYEPPDGEAVDTTPEFTYEFELDRK 196
>gi|196007336|ref|XP_002113534.1| hypothetical protein TRIADDRAFT_57036 [Trichoplax adhaerens]
gi|190583938|gb|EDV24008.1| hypothetical protein TRIADDRAFT_57036 [Trichoplax adhaerens]
Length = 183
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 85 ESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPF 144
E R L+KEW Y+ + + D + S+ +AL +L++ S LY +A+Q DP L P+
Sbjct: 100 ERRILLLKEWSRYKMNQHRSDLIKFQDIYKSRNQALLQLKVLSPSLYAKALQADPQLFPY 159
Query: 145 AAKGPLHTPPIENYECPDGDYT 166
GP TPPI Y+ P+ + T
Sbjct: 160 QCNGPTFTPPIAGYDQPEAEVT 181
>gi|393909491|gb|EJD75470.1| hypothetical protein LOAG_17382 [Loa loa]
Length = 194
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
R RA LSE+ + R+ L ++ + +K A D + I I Q+ AL +L++ S ELY
Sbjct: 91 RMRAPVMLSEDEKDERAILEMDYMRHLNKLAVMDTRWIVESIRKQENALQKLKMLSPELY 150
Query: 132 QEAIQIDPTLL-PFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+ A++ D L F +GP TPP+E Y+ PDG Y DVS+ +
Sbjct: 151 KAALEPDECFLQSFTYQGPTLTPPLELYDPPDGHYIDVSKKW 192
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 13 LLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
L F +GP TPP+E Y+ PDG Y DVS+ +
Sbjct: 161 LQSFTYQGPTLTPPLELYDPPDGHYIDVSKKW 192
>gi|349803269|gb|AEQ17107.1| putative mitochondrial ribosomal protein l40 [Pipa carvalhoi]
Length = 125
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 118 RALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSR 170
+ L+++ ESE+LY AI DP LLPF +GP +TPPI ++ PDG Y D+++
Sbjct: 70 KKLEKIPPESEDLYNAAILCDPELLPFENRGPCYTPPIPHHNAPDGKYNDITK 122
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 9 IDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSR 42
DP LLPF +GP +TPPI ++ PDG Y D+++
Sbjct: 89 CDPELLPFENRGPCYTPPIPHHNAPDGKYNDITK 122
>gi|312076795|ref|XP_003141021.1| hypothetical protein LOAG_05436 [Loa loa]
Length = 102
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 79 LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQID 138
LSE+ + R+ L ++ + +K A D + I I Q+ AL +L++ S ELY+ A++ D
Sbjct: 6 LSEDEKDERAILEMDYMRHLNKLAVMDTRWIVESIRKQENALQKLKMLSPELYKAALEPD 65
Query: 139 PTLL-PFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L F +GP TPP+E Y+ PDG Y DVS+ +
Sbjct: 66 ECFLQSFTYQGPTLTPPLELYDPPDGHYIDVSKKW 100
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 16 FAAKGPLHTPPIENYECPDGDYTDVSRNF 44
F +GP TPP+E Y+ PDG Y DVS+ +
Sbjct: 72 FTYQGPTLTPPLELYDPPDGHYIDVSKKW 100
>gi|346464599|gb|AEO32144.1| hypothetical protein [Amblyomma maculatum]
Length = 172
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R RALP L E + R + + W Y ++ + +++R++ +QQ+AL+ L SEEL
Sbjct: 99 LRHRALPVLDHEACQLREAMQRAWSTYCMRKHMNEAAMLERIVATQQKALEMLEDASEEL 158
Query: 131 YQEAIQIDPTLLP 143
Y AIQ D LLP
Sbjct: 159 YTAAIQADNGLLP 171
>gi|242003878|ref|XP_002436228.1| ribosomal protein L28, putative [Ixodes scapularis]
gi|215499564|gb|EEC09058.1| ribosomal protein L28, putative [Ixodes scapularis]
Length = 171
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 71 IRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130
+R R LP L E + R + + W +Y + + + +++R++ +QQ+ALD L+ ES EL
Sbjct: 96 LRHRTLPVLDHETCQLREAMQRAWTVYCKRMHENEASMMERVVAAQQKALDMLQEESPEL 155
Query: 131 YQEAIQID 138
YQ A+Q+
Sbjct: 156 YQAAVQVT 163
>gi|326429461|gb|EGD75031.1| hypothetical protein PTSG_07256 [Salpingoeca sp. ATCC 50818]
Length = 125
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 73 SRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQ 132
+R P L+ E ++ R+ L+KEW + + + K + + + ++ RAL L EEL
Sbjct: 31 ARKRPELTREELDRRAKLVKEWSKHCQRHENRVMKRMSQAVKARDRALFALADIDEELLY 90
Query: 133 EAIQIDPTLLPFAAKGPLHTPPIENY 158
+A D + P A PL TPPI Y
Sbjct: 91 KACMPDSSRWPLKASKPLATPPIPGY 116
>gi|56752829|gb|AAW24626.1| SJCHGC09015 protein [Schistosoma japonicum]
Length = 242
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 42 RNFEKEYR-----DRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGI 96
R EKE + DR+ E + +++ + K+R R +SE ++ R + K+W
Sbjct: 57 RKIEKEIKRFSRFDRRLRPVEDIEGDRQLMKEIKLRQRLPIDISETELDERVGIWKKWTH 116
Query: 97 YRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLL-------------- 142
Y++ A ++ ++ + I +QQ ALD L S +LY+EAI+ P L+
Sbjct: 117 YQANVAHREIIMLKKAIAAQQHALDCLYKTSPDLYKEAIKPCPELVQSEPSDDLNLTVTR 176
Query: 143 ---------PFAAKGPLHTPPIEN---YECPDGDYTDVSRNFEKEY 176
P+ LH I + YE PDG+ D++ E+
Sbjct: 177 GNNYLTLVGPYIGAPKLHGELINSTAEYEPPDGEQQDITSKLTYEF 222
>gi|226483647|emb|CAX74124.1| 39S ribosomal protein L40, mitochondrial precursor [Schistosoma
japonicum]
Length = 242
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 42 RNFEKEYR-----DRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGI 96
R EKE + DR+ E + +++ + K+R R +SE ++ R + K+W
Sbjct: 57 RKIEKEIKRFSRFDRRLRPVEDIEGDRQLMKEIKLRQRLPIDISETELDERVGIWKKWTH 116
Query: 97 YRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLL-------------- 142
Y++ A ++ ++ + I +QQ ALD L S +LY+EAI+ P L+
Sbjct: 117 YQANVAHREIIMLKKAIAAQQHALDCLYKTSPDLYKEAIKPCPELVQSEPSDDLNLTVTR 176
Query: 143 ---------PFAAKGPLHTPPIEN---YECPDGDYTDVSRNFEKEY 176
P+ LH I + YE PDG+ D++ E+
Sbjct: 177 GNNYLTLVGPYIGAPKLHGELINSTAEYEPPDGEQQDITPKLTYEF 222
>gi|256089095|ref|XP_002580652.1| hypothetical protein [Schistosoma mansoni]
gi|350644585|emb|CCD60706.1| hypothetical protein Smp_175810 [Schistosoma mansoni]
Length = 245
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 29/145 (20%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K+R R L +SE ++ R + K W Y+ A+++ + + I +QQ AL L S
Sbjct: 90 KLRQRPLIDISETELDERIGIWKNWTRYQKNVAKREIIMYNSAIAAQQNALKWLYETSPS 149
Query: 130 LYQEAIQIDPTLL--------------------------PFAAKGPLHTPPIEN---YEC 160
LY+ AIQ P L P+ LH I++ YE
Sbjct: 150 LYKMAIQPCPELTQSSESLNDDNSRVTKENEMNYVTIVGPYMTAPKLHGELIDSTKEYEP 209
Query: 161 PDGDYTDVSRNFEKEYRDRKAALEE 185
PDG+ D + E+ + L E
Sbjct: 210 PDGEQIDTTVRLTYEFEIEQQLLAE 234
>gi|9634262|ref|NP_037801.1| ORF41 alkaline exonuclease [Spodoptera exigua MNPV]
gi|6960501|gb|AAF33571.1|AF169823_41 ORF41 alkaline exonuclease [Spodoptera exigua MNPV]
Length = 413
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKP 65
L F PL +N C DGD +S+ F K+Y D +E +L++NK P
Sbjct: 315 LQFDLDCPLEVILSKNKYCGDGDIKKMSKIFNKKYIDHHRRVESLLDRNKNP 366
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 142 LPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKP 193
L F PL +N C DGD +S+ F K+Y D +E +L++NK P
Sbjct: 315 LQFDLDCPLEVILSKNKYCGDGDIKKMSKIFNKKYIDHHRRVESLLDRNKNP 366
>gi|390562415|ref|ZP_10244631.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173010|emb|CCF83934.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 721
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 28 ENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLS--EEVIE 85
+ YE D Y V++ E + +R AALE + + ++ R LPP S E++ +
Sbjct: 430 QRYELVDPAYRLVAQTLETAWNERLAALEAMRTEEER-------WRRPLPPASTPEQMRD 482
Query: 86 SRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQR-ALDELRLESEELYQ 132
+ + L +W Y + A +D K I R + Q R A D + +E ++Q
Sbjct: 483 TLAQLRNQW--YGGRLASQDKKEILRCVLEQARLATDGKVIRAEVVWQ 528
>gi|408399292|gb|EKJ78406.1| hypothetical protein FPSE_01415 [Fusarium pseudograminearum CS3096]
Length = 1293
Score = 36.2 bits (82), Expect = 7.3, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 4 SVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK 63
++ A P F A+G LHTP + +Y+ + + + + + + + +E+ N
Sbjct: 88 ALTVAARPKPKVFHAQGSLHTPHLPSYQLTEEALEGLREHVDDQSKLLDSQRQELAGVNA 147
Query: 64 KPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEA-QKDYKLIDRLIYSQQRALDE 122
+ ++K+++ RAL L +E I + + W ++ EA QK + I ++ + R
Sbjct: 148 QLMEQKQLQERALEILEQERIATLEREL--WKHQKANEAFQKALREIGEIVTAVARGDLT 205
Query: 123 LRLESEELYQEAIQIDPTLLPF 144
+++ +++DP + F
Sbjct: 206 MKVR-----MNTVEMDPEITTF 222
>gi|260159588|gb|ACX32464.1| two-component histidine kinase [Fusarium oxysporum f. sp.
lycopersici]
Length = 1293
Score = 35.8 bits (81), Expect = 8.6, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 8 AIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQ 67
A+ P F A+G LH+P + +Y+ + + + + + + + +E+ N + +
Sbjct: 92 AVRPKPKVFHAQGSLHSPHLPSYQLTEEALEGLREHVDDQSKLLDSQRQELAGVNAQLLE 151
Query: 68 RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEA-QKDYKLIDRLIYSQQRALDELRLE 126
+K+++ RAL L +E I + + W ++ EA QK + I ++ + R +++
Sbjct: 152 QKQLQERALEILEQERIATLEREL--WKHQKANEAFQKALREIGEIVTAVARGDLTMKVR 209
Query: 127 SEELYQEAIQIDPTLLPF 144
+++DP + F
Sbjct: 210 -----MNTVEMDPEITTF 222
>gi|342866481|gb|EGU72142.1| hypothetical protein FOXB_17386 [Fusarium oxysporum Fo5176]
Length = 1293
Score = 35.8 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 8 AIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQ 67
A+ P F A+G LH+P + +Y+ + + + + + + + +E+ N + +
Sbjct: 92 AVRPKPKVFHAQGSLHSPHLPSYQLTEEALEGLREHVDDQSKLLDSQRQELAGVNAQLLE 151
Query: 68 RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEA-QKDYKLIDRLIYSQQRALDELRLE 126
+K+++ RAL L +E I + + W ++ EA QK + I ++ + R +++
Sbjct: 152 QKQLQERALEILEQERIATLEREL--WKHQKANEAFQKALREIGEIVTAVARGDLTMKVR 209
Query: 127 SEELYQEAIQIDPTLLPF 144
+++DP + F
Sbjct: 210 -----MNTVEMDPEITTF 222
>gi|122136705|sp|Q2PG46.1|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis]
Length = 345
Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDY----TDVSRNFEKEYRDRKAALEEILNKNKKPHQRK 69
LPF+ PL +EN C DG + T ++ F+KE +R AA N K R
Sbjct: 142 LPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAA-----NTGSKQRSRL 196
Query: 70 KIRSRALPPLSE-EVIESRSNLIK---EWGIYRSK-----EAQKDYKLIDRLIYSQ---- 116
+ ++ L + I R+ + K + G+ + ++ +KL+++++ +
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256
Query: 117 ----QRALDEL-----RLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYE--CPDGDY 165
R L L RLE+ E IDPTL P E Y C D D
Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMC-DEDP 315
Query: 166 TDVSRNFEKEYRDRK 180
+ NF +E R RK
Sbjct: 316 QLFAYNFREELRQRK 330
>gi|39726367|gb|AAR30126.1| putative histidine kinase NIK1p [Gibberella moniliformis]
Length = 1282
Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 8 AIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQ 67
A+ P F A+G LH+P + +Y+ + + + + + + + +E+ N + +
Sbjct: 92 AVRPKPKVFHAQGSLHSPHLPSYQLTEEALEGLREHVDDQSKLLDSQRQELAGVNAQLLE 151
Query: 68 RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEA-QKDYKLIDRLIYSQQRALDELRLE 126
+K+++ RAL L +E I + + W ++ EA QK + I ++ + R +++
Sbjct: 152 QKQLQERALEILEQERIATLEREL--WKHQKANEAFQKALREIGEIVTAVARGDLTMKVR 209
Query: 127 SEELYQEAIQIDPTLLPF 144
+++DP + F
Sbjct: 210 -----MNTVEMDPEITTF 222
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,314,970,636
Number of Sequences: 23463169
Number of extensions: 138335483
Number of successful extensions: 354078
Number of sequences better than 100.0: 342
Number of HSP's better than 100.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 352676
Number of HSP's gapped (non-prelim): 1491
length of query: 198
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 63
effective length of database: 9,191,667,552
effective search space: 579075055776
effective search space used: 579075055776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 73 (32.7 bits)