BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13292
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OXT|A Chain A, Crystal Structure Of Meaban Virus Nucleoside-2'-O-
           Methyltransferase
 pdb|2OXT|B Chain B, Crystal Structure Of Meaban Virus Nucleoside-2'-O-
           Methyltransferase
 pdb|2OXT|C Chain C, Crystal Structure Of Meaban Virus Nucleoside-2'-O-
           Methyltransferase
 pdb|2OXT|D Chain D, Crystal Structure Of Meaban Virus Nucleoside-2'-O-
           Methyltransferase
          Length = 265

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 2   APSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNK 61
            P +  +    ++ F ++  +HT P+E  +    D  + S  +  E  +R   + E+L K
Sbjct: 113 VPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGESSPKWSVE-SERTIKILELLEK 171

Query: 62  NKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
            K  +       + L P S EV+E  S + ++WG
Sbjct: 172 WKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG 205


>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
           Lactonizing Enzyme From Silicibacter Pomeroyi
          Length = 378

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 114 YSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYEC 160
           +++Q+AL  +R  +E+L+    Q   TL   AA  PLH+ P+   EC
Sbjct: 200 WTRQQALRVMR-ATEDLHVMFEQPGETLDDIAAIRPLHSAPVSVDEC 245


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,356
Number of Sequences: 62578
Number of extensions: 259794
Number of successful extensions: 496
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 18
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)