BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13292
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2Q5|RM40_MOUSE 39S ribosomal protein L40, mitochondrial OS=Mus musculus GN=Mrpl40
PE=2 SV=2
Length = 206
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 63/93 (67%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +++ +E + + I ++ +QQ AL+EL+LES ELY EAI+ D
Sbjct: 107 SPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAELYAEAIKRDT 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 199
>sp|P83565|RM40_RAT 39S ribosomal protein L40, mitochondrial OS=Rattus norvegicus
GN=Mrpl40 PE=1 SV=2
Length = 206
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%)
Query: 80 SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
S E E R+ L+K W +Y+ +E + + I ++ +QQ AL++L+LES ELY EAI+ D
Sbjct: 107 SFEESERRALLLKRWALYKQQEHEMERDAIRAMLEAQQEALEQLKLESTELYAEAIKRDT 166
Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
+L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 199
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
D +L PF +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 165 DTSLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 199
>sp|Q9NQ50|RM40_HUMAN 39S ribosomal protein L40, mitochondrial OS=Homo sapiens GN=MRPL40
PE=1 SV=1
Length = 206
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 68/103 (66%)
Query: 70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
K R R L+ E E R+ L+K+W +Y+ +E + + I ++ +QQ AL+EL+LES +
Sbjct: 97 KARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPK 156
Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
L+ EAI+ DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 DPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 44
DP L PF +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 165 DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199
>sp|Q2PG46|TFB1M_MACFA Dimethyladenosine transferase 1, mitochondrial OS=Macaca
fascicularis GN=TFB1M PE=2 SV=1
Length = 345
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDY----TDVSRNFEKEYRDRKAALEEILNKNKKPHQRK 69
LPF+ PL +EN C DG + T ++ F+KE +R AA N K R
Sbjct: 142 LPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAA-----NTGSKQRSRL 196
Query: 70 KIRSRALPPLSE-EVIESRSNLIK---EWGIYRSK-----EAQKDYKLIDRLIYSQ---- 116
+ ++ L + I R+ + K + G+ + ++ +KL+++++ +
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256
Query: 117 ----QRALDEL-----RLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYE--CPDGDY 165
R L L RLE+ E IDPTL P E Y C D D
Sbjct: 257 RKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMC-DEDP 315
Query: 166 TDVSRNFEKEYRDRK 180
+ NF +E R RK
Sbjct: 316 QLFAYNFREELRQRK 330
>sp|Q5R4V9|TFB1M_PONAB Dimethyladenosine transferase 1, mitochondrial OS=Pongo abelii
GN=TFB1M PE=2 SV=1
Length = 343
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 48/207 (23%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDY----TDVSRNFEKEYRDRKAALEEILNKNKKPHQRK 69
LPF+ PL +EN C DG + T ++ F+KE +R AA N K R
Sbjct: 142 LPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAA-----NTGSKQRSRL 196
Query: 70 KIRSRALPPLSE-EVIESRSNLIK---EWGIYRSK-----EAQKDYKLIDRLIYSQ---- 116
+ ++ L + I R+ + K + G+ + ++ +KL+++++ +
Sbjct: 197 SVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFR 256
Query: 117 ----QRALDEL-----RLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYE-------- 159
R L L RLES E +DPTL P P I +++
Sbjct: 257 RKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRP-------CQPSISHFKSLCDVYRK 309
Query: 160 -CPDGDYTDVSRNFEKEYRDRKAALEE 185
C D D + NF +E + RK+ EE
Sbjct: 310 MC-DEDPQLFAYNFREELKQRKSKNEE 335
>sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens
GN=TFB1M PE=1 SV=1
Length = 346
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 14 LPFAAKGPLHTPPIENYECPDGDY----TDVSRNFEKEYRDRKAALEEILNKNKKPHQRK 69
LPF+ PL +EN C DG + T ++ F+KE +R AA N K R
Sbjct: 142 LPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAA-----NTGSKQRSRL 196
Query: 70 KIRSRAL 76
+ ++ L
Sbjct: 197 SVMAQYL 203
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 142 LPFAAKGPLHTPPIENYECPDGDY----TDVSRNFEKEYRDRKAA 182
LPF+ PL +EN C DG + T ++ F+KE +R AA
Sbjct: 142 LPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAA 186
>sp|Q9QSK2|DPOL_IIV6 DNA polymerase 037L OS=Invertebrate iridescent virus 6 GN=DPOL PE=3
SV=1
Length = 1273
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 47 EYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIES--------RSNLIKEWGIYR 98
+Y KA E IL KN+K + KI + +P +++E+I++ N IK+W + R
Sbjct: 1073 DYGGDKATFEPILGKNEKGEDKWKIGNYVVPLITDEIIKTCGTNGLPMTQNEIKDWYLER 1132
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis
thaliana GN=SNL3 PE=1 SV=3
Length = 1330
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 42 RNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPL-------SEEVIESRSNLIKEW 94
R E+ Y D + ++L KN S ALP + EE RS+ K W
Sbjct: 539 RCIERLYGDHGLDVMDVLKKNV---------SLALPVILTRLKQKQEEWARCRSDFDKVW 589
Query: 95 G-IYRSKEAQKDYKLID-RLIYSQQRALDELRLESEELYQEAIQI------DPTLLPFAA 146
IY A+ YK +D R Y +Q+ D +L + L E +I D +LL FAA
Sbjct: 590 AEIY----AKNYYKSLDHRSFYFKQQ--DSKKLSMKALLAEIKEITEKKREDDSLLAFAA 643
Query: 147 KGPLHTPPIENYECPDGD 164
L P ++ PD D
Sbjct: 644 GNRLSISPDLEFDYPDHD 661
>sp|Q7A5M1|EBHB_STAAN Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain N315) GN=ebhB PE=4 SV=1
Length = 3890
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMANLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|Q99U53|EBHB_STAAM Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=ebhB PE=4 SV=1
Length = 3890
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMANLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|A7X2C5|EBHB_STAA1 Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=ebhB PE=4 SV=1
Length = 3890
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMANLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|A6QGY5|EBHB_STAAE Extracellular matrix-binding protein EbhB OS=Staphylococcus aureus
(strain Newman) GN=ebhB PE=4 SV=1
Length = 7031
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLES-EELYQEAIQIDPTLLPFAAKG 148
+ +K+ K Y + + +Q+ L R+ + + Q A +D + G
Sbjct: 3734 LAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASL-QNG 3792
Query: 149 PLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3793 INNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=ebh PE=4 SV=1
Length = 10421
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain COL) GN=ebh PE=4 SV=1
Length = 10498
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|Q2FH04|EBH_STAA3 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain USA300) GN=ebh PE=4 SV=1
Length = 10421
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain MW2) GN=ebh PE=1 SV=1
Length = 9904
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLES-EELYQEAIQIDPTLLPFAAKG 148
+ +K+ K Y + + +Q+ L R+ + + Q A +D + + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMASLQS-G 3792
Query: 149 PLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK P+
Sbjct: 3793 INNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKQHGPN 3834
>sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain NCTC 8325) GN=ebh PE=1 SV=1
Length = 9535
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LAAAKQNAKTYLNTLTSITDAQKNNLISQITSATRVSGVDTVKQNAQHLDQAMASLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH9) GN=ebh PE=4 SV=1
Length = 10624
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMANLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH1) GN=ebh PE=4 SV=1
Length = 10624
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3678 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3733
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K+ K Y + + +Q+ L R+ + ++ Q + G
Sbjct: 3734 LATAKQNAKTYLNTLTSITDAQKNNLISQISSATRVSGVDTVKQNAQHLDQAMANLQNGI 3793
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK+ P+
Sbjct: 3794 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKSTGPN 3834
>sp|B0C1M5|PNP_ACAM1 Polyribonucleotide nucleotidyltransferase OS=Acaryochloris marina
(strain MBIC 11017) GN=pnp PE=3 SV=2
Length = 716
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 106 YKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDY 165
Y+++ LI +Q+ + EL +E E + A + DPTL F + T P++
Sbjct: 207 YEVVCDLIKAQKELIAELGIEQVE--EAAPETDPTLENFVQERV--TDPVK--------- 253
Query: 166 TDVSRNFEKEYRDRKAALEEI 186
DV FEK+ R AAL+EI
Sbjct: 254 -DVLARFEKDKNVRDAALDEI 273
>sp|Q6GGX3|EBH_STAAR Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain MRSA252) GN=ebh PE=4 SV=1
Length = 10746
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 36 DYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG 95
DY D + + + Y + AA E I+N N P ++ + +E+V S++ L +
Sbjct: 3674 DYVDANNDKQTAYNNAVAAAETIINANSNP----EMNPSTITQKAEQVNSSKTALNGDEN 3729
Query: 96 IYRSKEAQKDY-KLIDRLIYSQQRAL-----DELRLESEELYQEAIQIDPTLLPFAAKGP 149
+ +K K Y + + +Q+ L R+ S + ++ Q + G
Sbjct: 3730 LATAKLNAKTYLNTLTSITDAQKNNLISQISSATRVSSVDTVKQNAQHLDQAMASLQNGI 3789
Query: 150 LHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 194
+ +++ E Y D N ++EY + A + ILNK P+
Sbjct: 3790 NNESQVKSSE----KYRDADTNKQQEYDNAITAAKAILNKQHGPN 3830
>sp|O14181|RM28_SCHPO 54S ribosomal protein L28, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl28 PE=3 SV=1
Length = 118
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 69 KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
KK+RS + P ++ E + + W I+ ++ ++ L+ + + A +EL+ SE
Sbjct: 31 KKVRSLKMNP---DMWEKHEVINRAWRIHEYRQEKQRENLLKNQFSAMKIACEELKHTSE 87
Query: 129 ELYQEAIQIDPT-LLPFAAKGPLHTPP 154
LY+ A+ P + P TPP
Sbjct: 88 TLYKAAMSDSINRRFPVETRTPTDTPP 114
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 26 PIENYECPDGDYTDVSR---NFEKEYRDRKAALEEILNKNKKPHQR--KKIRSRALPPLS 80
P EN + P + V+ N K Y + + EE L+ K+ Q+ ++ ++L +
Sbjct: 591 PDENLKDPHAHKSSVTSCLYNLGKLYHE-QGHYEEALSVYKEAIQKMPRQFAPQSLYNMM 649
Query: 81 EEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPT 140
E S L + Y K + L Y + AL + E+E+L+ +AI++DPT
Sbjct: 650 GEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPT 709
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,769,204
Number of Sequences: 539616
Number of extensions: 3390751
Number of successful extensions: 9264
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 8959
Number of HSP's gapped (non-prelim): 395
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)