Query psy13292
Match_columns 198
No_of_seqs 103 out of 112
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 15:44:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1joc_A EEA1, early endosomal a 51.5 53 0.0018 24.8 7.0 47 85-131 5-52 (125)
2 2w9y_A CE-FAR-7, fatty acid/re 32.1 19 0.00065 28.7 1.7 24 114-137 46-69 (140)
3 3zwl_E Eukaryotic translation 27.6 47 0.0016 22.1 2.8 23 80-102 10-32 (50)
4 3fwc_B Nuclear mRNA export pro 25.5 1.7E+02 0.0059 21.1 5.8 28 108-135 26-53 (85)
5 2eqb_B RAB guanine nucleotide 23.4 1.7E+02 0.0059 21.9 5.6 45 90-136 24-69 (97)
6 2fyz_A Fusion protein, fusion 21.5 2.1E+02 0.007 19.8 5.3 37 95-131 8-44 (63)
7 1svf_A Protein (fusion glycopr 19.6 2.3E+02 0.0079 19.6 5.3 36 95-130 5-40 (64)
8 3oja_B Anopheles plasmodium-re 16.3 2.7E+02 0.0091 24.8 6.2 26 104-129 544-569 (597)
9 2rp4_A Transcription factor P5 15.6 42 0.0014 24.4 0.6 43 148-190 1-54 (76)
10 2jo8_A Serine/threonine-protei 14.9 2.8E+02 0.0096 18.5 5.6 34 78-118 9-42 (51)
No 1
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.50 E-value=53 Score=24.83 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Q psy13292 85 ESRSNLIKEWGIYRS-KEAQKDYKLIDRLIYSQQRALDELRLESEELY 131 (198)
Q Consensus 85 erRalL~K~Ws~Yk~-~q~~~e~~~I~~~~~SQqkALeELk~eSpeLY 131 (198)
|+|++++++=..=.. ..-..+...+++.+..+..||.+|...+..|-
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 677887776544332 22245667788888899999999887766553
No 2
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=32.10 E-value=19 Score=28.72 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHhcc
Q psy13292 114 YSQQRALDELRLESEELYQEAIQI 137 (198)
Q Consensus 114 ~SQqkALeELk~eSpeLYqaAiq~ 137 (198)
.+-.++++.|+..||+||..|...
T Consensus 46 ~~e~e~i~alK~KSp~L~~K~~~l 69 (140)
T 2w9y_A 46 SQCGEMIDEVSKKHPELGKRLATV 69 (140)
T ss_dssp ---TTHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHH
Confidence 455678999999999999998654
No 3
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=27.61 E-value=47 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy13292 80 SEEVIESRSNLIKEWGIYRSKEA 102 (198)
Q Consensus 80 s~EelerRalL~K~Ws~Yk~~q~ 102 (198)
+.|-++.|.-++++|.-|+....
T Consensus 10 ~~evIe~RRrlLeEW~awRa~~~ 32 (50)
T 3zwl_E 10 MRDLILHQRELLKQWTEYREKIG 32 (50)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778899999999999998543
No 4
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=25.47 E-value=1.7e+02 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHHHHh
Q psy13292 108 LIDRLIYSQQRALDELRLESEELYQEAI 135 (198)
Q Consensus 108 ~I~~~~~SQqkALeELk~eSpeLYqaAi 135 (198)
.|.+.+.+.++=-......|+|||.|=+
T Consensus 26 ~l~~~l~~~~~R~~iI~sLs~eLy~AFi 53 (85)
T 3fwc_B 26 IVKREFSEANYRKDFIDTMTRELYDAFL 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445555555555667778888888755
No 5
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.37 E-value=1.7e+02 Score=21.88 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCHHHHHHHhc
Q psy13292 90 LIKEWGIYRSKEAQKDYKLIDRLIYSQQRALD-ELRLESEELYQEAIQ 136 (198)
Q Consensus 90 L~K~Ws~Yk~~q~~~e~~~I~~~~~SQqkALe-ELk~eSpeLYqaAiq 136 (198)
+...|...+ ....+....+...++....++ ||-..|-.||..||.
T Consensus 24 ~~~e~~~L~--~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 24 RDDEVKRLR--EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454433 344555666777777777764 899999999999985
No 6
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=21.52 E-value=2.1e+02 Score=19.81 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Q psy13292 95 GIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131 (198)
Q Consensus 95 s~Yk~~q~~~e~~~I~~~~~SQqkALeELk~eSpeLY 131 (198)
++++.++-.++...|+..+.+-.+|..+|..-...|=
T Consensus 8 AL~qA~qNA~~I~~LK~Si~~TNeAV~el~~g~~~la 44 (63)
T 2fyz_A 8 SLVQAQTNARAIAAMKNSIQATNRAVFEVKEGTQRLA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999987665553
No 7
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=19.58 E-value=2.3e+02 Score=19.60 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Q psy13292 95 GIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEEL 130 (198)
Q Consensus 95 s~Yk~~q~~~e~~~I~~~~~SQqkALeELk~eSpeL 130 (198)
++++.++-.++...|+..+.+-.+|..+|..-...|
T Consensus 5 AL~qA~qNa~~I~~LK~Si~~TNeAV~el~~g~~~l 40 (64)
T 1svf_A 5 ALVKANENAAAILNLKNAIQKTNAAVADVVQATQSL 40 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998765554
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=16.27 E-value=2.7e+02 Score=24.83 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHH
Q psy13292 104 KDYKLIDRLIYSQQRALDELRLESEE 129 (198)
Q Consensus 104 ~e~~~I~~~~~SQqkALeELk~eSpe 129 (198)
++...+++.++.+++.+++|+.+=..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55567778888888888888766433
No 9
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=15.64 E-value=42 Score=24.38 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCCCCCCC-CCCCC---CCCcccccc----hhh---hHhHHHHHHHHHHHHhhc
Q psy13292 148 GPLHTPPI-ENYEC---PDGDYTDVS----RNF---EKEYRDRKAALEEILNKN 190 (198)
Q Consensus 148 GPt~TPPi-~~Y~~---PDG~Y~DiT----k~~---~~e~~~~~~~~~~~~~~~ 190 (198)
||.++.+. .+|+. .||+|--+- |.| -.|=...+++.|-|-+-+
T Consensus 1 ~~~d~~~~p~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~aA~~vLRnP~ 54 (76)
T 2rp4_A 1 GPLGSDDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEAAAEVLRNPN 54 (76)
T ss_dssp -----CCSSCCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 78888886 56664 899997653 445 223344566666555433
No 10
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=14.94 E-value=2.8e+02 Score=18.52 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13292 78 PLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQR 118 (198)
Q Consensus 78 ~Ls~EelerRalL~K~Ws~Yk~~q~~~e~~~I~~~~~SQqk 118 (198)
.||.||+.+|- ..-..+-+++...++.-|.+++.
T Consensus 9 ~ls~eEL~~rl-------~~Ld~~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 9 SWTVEDLQKRL-------LALDPMMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp GSCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-------HHccHHHHHHHHHHHHHHHHhHh
Confidence 48999998876 23345666777888888887765
Done!