RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13292
(198 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 5e-04
Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 36/182 (19%)
Query: 3 PSVQYAIDPTLLP-FAAKGPLHTPPIENYECPDGD-YTDVSRNF-----EKEYRDRKAAL 55
P +P L A +N++ + D T + + EYR L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 56 EEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYS 115
+ + I + L + +VI+S ++ +++ +K K I S
Sbjct: 379 S-VFPPSAH------IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPS 430
Query: 116 QQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDG-DYTDVSRNFEK 174
EL+++ E Y LH +++Y P D D+ +
Sbjct: 431 IYL---ELKVKLENEYA-----------------LHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 175 EY 176
+Y
Sbjct: 471 QY 472
Score = 35.6 bits (81), Expect = 0.008
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 37/176 (21%)
Query: 55 LEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWG----------IYRSKEAQ- 103
L+++L + + S + + L+K + +K
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 104 -----------KDYKLIDRLI--YSQQRALDELRL-----ESEELYQEAIQIDPTLLPFA 145
+ ++ D L + +LD + E + L + + P LP
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 146 AKG--PLHTPPI-ENYECPDGDYTDVSRNFEKEYRDR-KAALEEILNKNKKPHQRK 197
P I E+ D N++ D+ +E LN + RK
Sbjct: 322 VLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 31.7 bits (71), Expect = 0.16
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 41/151 (27%)
Query: 22 LHTPPIENYECPDG-DYTDVSRNFEKEY--------------RDRKAALEEI-LNKNKKP 65
LH +++Y P D D+ + +Y +R + L+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--- 501
Query: 66 HQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYS---------- 115
+KIR + + S N +++ Y+ + +RL+ +
Sbjct: 502 FLEQKIRHDSTAWNAS---GSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPKIEE 557
Query: 116 ---QQRALDELRL----ESEELYQEAI-QID 138
+ D LR+ E E +++EA Q+
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 60/191 (31%)
Query: 1 MAPS-VQYAID-----PTLLP-FAAKGPLHTPPIE------NYECPDGDYTDVS-----R 42
+ PS ++ +++ P+ P + L ++ N P G ++S +
Sbjct: 319 LPPSILEDSLENNEGVPS--PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 43 NF------------EKEYRDRKAALEEILNKNKKPHQRKKIR--SRALP-------PLSE 81
N R KA L++++ P +K++ +R LP L
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 82 EVIESRSNLIKEWGIYRSKE-AQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPT 140
+ LI + + + KD ++ +Y D LR+ S I
Sbjct: 434 PASD----LINKDLVKNNVSFNAKDIQIP---VYDTFDGSD-LRVLSGS-------ISER 478
Query: 141 LLPFAAKGPLH 151
++ + P+
Sbjct: 479 IVDCIIRLPVK 489
Score = 35.0 bits (80), Expect = 0.012
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 29/70 (41%)
Query: 27 IENYECPD------GDYTDVSRNFEKEYRDRKAALE---EILNKNKKPHQRKKIRSRALP 77
I NY + GD AL+ +LN K +KI L
Sbjct: 1843 IVNYNVENQQYVAAGD---------------LRALDTVTNVLNFIKL----QKIDIIELQ 1883
Query: 78 -PLSEEVIES 86
LS E +E
Sbjct: 1884 KSLSLEEVEG 1893
Score = 32.3 bits (73), Expect = 0.11
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 34/109 (31%)
Query: 117 QRALDELRLESEELYQEAIQID---PTLLP-FAAKGPLHTPPIE------NYECPDGDYT 166
A L L +++++ + P+ P + L ++ N P G
Sbjct: 311 YEAYPNTSLPPSIL-EDSLENNEGVPS--PMLSISN-LTQEQVQDYVNKTNSHLPAGKQV 366
Query: 167 DVS-----RNF------------EKEYRDRKAALEEILNKNKKPH-QRK 197
++S +N R KA L++++ P +RK
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFSERK 413
Score = 26.6 bits (58), Expect = 7.8
Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 71/173 (41%)
Query: 52 KAALEEILNKNKKP-------HQRKKIRS----RALP------PLSE--EVIESRSNLIK 92
KAA E++ +K P H S AL + EV+ R ++
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH------SLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 93 EWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQ--IDPTLLPFAAKGPL 150
+ R + + +Y +I A++ R+ + QEA+Q ++ G L
Sbjct: 1795 V-AVPRDELGRSNYGMI---------AINPGRV-AASFSQEALQYVVERVG---KRTGWL 1840
Query: 151 HTPPIE--NYECPD------GDYTDVSRNFEKEYRDRKAALE---EILNKNKK 192
+E NY + GD AL+ +LN K
Sbjct: 1841 ----VEIVNYNVENQQYVAAGD---------------LRALDTVTNVLNFIKL 1874
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.080
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 15/77 (19%)
Query: 8 AIDPTLL-PFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPH 66
D + PFAA P E + + E +R + ++ KK
Sbjct: 563 GWDLDAIIPFAA------IP-EQG----IELEHIDSKSEFAHRIMLTNILRMMGCVKKQK 611
Query: 67 QRKKIRSRALP---PLS 80
+ I +R P+S
Sbjct: 612 SARGIETRPAQVILPMS 628
Score = 30.2 bits (68), Expect = 0.48
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 37/114 (32%)
Query: 73 SRALPPLSEEVIESRSNLIKEWGIYRSKEA-----QKDYKLIDRL---IYSQQRALDELR 124
SR S++V + ++ ++G S Q + ++ L IY ++
Sbjct: 509 SR----FSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEK------ 558
Query: 125 LESEELYQEAIQIDPTLL-PFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYR 177
+ D + PFAA P E + + E +R
Sbjct: 559 -------NGGLGWDLDAIIPFAA------IP-EQG----IELEHIDSKSEFAHR 594
Score = 27.9 bits (62), Expect = 3.0
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 25 PPIENYECPD-----GDYTDVSRNFEKEYRDRKAAL 55
P N + D +Y + +A
Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSK-TLKTDGVRAVS 1441
Score = 27.9 bits (62), Expect = 3.0
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 6/36 (16%)
Query: 153 PPIENYECPD-----GDYTDVSRNFEKEYRDRKAAL 183
P N + D +Y + +A
Sbjct: 1407 PGNRNADNVDKILEQFEYVLYPSK-TLKTDGVRAVS 1441
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.7
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 50 DRKAALEEILNKNKKPHQRKKIRSR--ALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYK 107
DR E + K ++ QRK+++ A + +E E ++EW + + Q
Sbjct: 78 DRLTQEPESIRKWRE-EQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQV--- 131
Query: 108 LIDRLIYSQQRALDELRLESEELYQE 133
++ R+ + YQ+
Sbjct: 132 ---------EKNKINNRIADKAFYQQ 148
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70,
ATPase domain, protein complex, triple helix, structural
genomics, NPPSFA; 2.30A {Homo sapiens}
Length = 142
Score = 26.3 bits (57), Expect = 5.0
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 52 KAALEEILNKNKKPHQRKKIRSRALPPLS--EEVIESRSNLIKEWGIYRSKEAQKDYKLI 109
L ++ + +RK P V+ + S + E + K+Y +
Sbjct: 6 SGTLITYIDLKEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRL 65
Query: 110 DRLIYSQQRALDELRLESEELYQEA 134
+ L+ Q ALD + + EE + A
Sbjct: 66 EELLTKQLLALDAVDPQGEEKCKAA 90
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet;
2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Length = 287
Score = 26.5 bits (59), Expect = 6.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 72 RSRALPPLSEEVIESRSNLIKEW 94
RSR + I SR+ ++W
Sbjct: 3 RSRGERTPAARRITSRNARFQQW 25
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo
sapiens} SCOP: a.7.7.1
Length = 99
Score = 25.0 bits (54), Expect = 9.4
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 60 NKNKKPHQRKKIRSRALPPLS--EEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQ 117
+ P + P + V+E L +E + K+ K Y L++ ++ +
Sbjct: 4 QSSSLPEECVPSDESTPPSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKEL 63
Query: 118 RALDELRLESEELYQEA 134
LD + ++ ++A
Sbjct: 64 LELDSVETGGQDSVRQA 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.387
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,182,162
Number of extensions: 192267
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 65
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.3 bits)