RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13292
         (198 letters)



>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
           {Escherichia coli, gene lpxA [TaxId: 562]}
          Length = 262

 Score = 25.2 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 97  YRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQE 133
             S+EA    +   +LIY   + LDE++ E  EL + 
Sbjct: 206 GFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAET 242


>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 227

 Score = 25.1 bits (53), Expect = 6.0
 Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 66  HQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRL 112
           + R  +R R +P L +          +      +    +   L+D L
Sbjct: 186 YDRNFLRLRVVPLLQQRWPHFAEATAR-----SAALCAEQESLLDEL 227


>d2b1xb1 d.17.4.4 (B:513-679) Naphthalene 1,2-dioxygenase beta
           subunit {Rhodococcus sp. ncimb12038 [TaxId: 92694]}
          Length = 167

 Score = 24.7 bits (53), Expect = 6.8
 Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 10/89 (11%)

Query: 109 IDRLIYSQQRALDELRLES-EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTD 167
           I   +Y +   LD  +      L  E +     +     +  +           D   + 
Sbjct: 10  ITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADS- 68

Query: 168 VSRNFEKEYRDRKAALEEILNKNKKPHQR 196
                      R   LE      + P  R
Sbjct: 69  --------MEMRVLRLETEYAWAEDPPSR 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 783,963
Number of extensions: 38726
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 17
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.7 bits)