BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13296
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 4 DQETVYGTHDDSHIVMSEKVQSLAGSI-YQEFEKMITKYDED--VVKDLMPLVVNVLESL 60
+ E + D+ + +S + SI Y + ++T DE+ + K N++E
Sbjct: 175 NNEMLMAKRDNVYTALSSNIGWKGYSIGYYKVNDIMTDLDENKQMTKHYDSARGNIIEGA 234
Query: 61 DLAFTENQEHEVELELLREDNEQLVTQYE 89
++ T+N E E+ L + D+E T E
Sbjct: 235 EIDLTKNSEFEIVLSFGQSDSEAAKTALE 263
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin
From D. Melanogaster
Length = 257
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 5 QETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVK---DLMPLVVNVLESL 60
QETV G+ + E V SLA E K + + E V K +L+P V+NV+ L
Sbjct: 40 QETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSML 98
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 9 YGTHDDSHIVMSEKVQSLAGS----IYQEFEKMITKYDEDVVKDL 49
YG D + + K S G+ + EF K ++KYD D V L
Sbjct: 274 YGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSKL 318
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 9 YGTHDDSHIVMSEKVQSLAGS----IYQEFEKMITKYDEDVVKDL 49
YG D + + K S G+ + EF K ++KYD D V L
Sbjct: 274 YGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSKL 318
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 NVLESLDLAFTENQEHEVELE-LLREDNEQL 84
L L++AF+ Q H+V ++ LL++D E L
Sbjct: 367 GALTQLNVAFSREQSHKVYVQHLLKQDREHL 397
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 55 NVLESLDLAFTENQEHEVELE-LLREDNEQL 84
L L++AF+ Q H+V ++ LL++D E L
Sbjct: 367 GALTQLNVAFSREQSHKVYVQHLLKQDREHL 397
>pdb|1OFJ|A Chain A, Recombinant Sperm Whale Myoglobin L29hH64LD122N MUTANT
(With Initiator Met)
Length = 154
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDN 81
+ F+ + T+ + +DL L V VL +L + HE EL+ L + +
Sbjct: 44 FDRFKHLKTEAEMKASEDLKKLGVTVLTALGAILKKKGHHEAELKPLAQSH 94
>pdb|2MGC|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
pdb|2MGD|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
pdb|2MGE|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
Length = 154
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDN 81
+ F+ + T+ + +DL L V VL +L + HE EL+ L + +
Sbjct: 44 FDRFKHLKTEAEMKASEDLKKLGVTVLTALGAILKKKGHHEAELKPLAQSH 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,677,239
Number of Sequences: 62578
Number of extensions: 93013
Number of successful extensions: 417
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 64
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)