BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13296
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura
GN=syd PE=3 SV=2
Length = 1235
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 84/102 (82%), Gaps = 8/102 (7%)
Query: 6 ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
ETVYGT +D+++VMSEK VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct: 19 ETVYGT-EDNNMVMSEKNDQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77
Query: 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100
LD ++ NQE +VELELLREDNEQLVTQYEREK RK ++Q
Sbjct: 78 CLDASYRINQEQDVELELLREDNEQLVTQYEREKSARKQSEQ 119
>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1
SV=1
Length = 1227
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 84/102 (82%), Gaps = 8/102 (7%)
Query: 6 ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
ETVYGT +D+++VMSEK VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct: 19 ETVYGT-EDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77
Query: 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100
LD ++ NQE +VE+ELLREDNEQLVTQYEREK RK ++Q
Sbjct: 78 CLDASYRINQEQDVEVELLREDNEQLVTQYEREKSARKQSEQ 119
>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus
GN=Mapk8ip3 PE=1 SV=1
Length = 1337
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 75/86 (87%)
Query: 15 SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVEL 74
S VMSE+V LAGSIY+EFE++I YDE+VVK+LMPLVVNVLE+LD +ENQEHEVEL
Sbjct: 21 SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVEL 80
Query: 75 ELLREDNEQLVTQYEREKQLRKAADQ 100
ELLREDNEQL+TQYEREK LRK A++
Sbjct: 81 ELLREDNEQLLTQYEREKALRKQAEE 106
>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens
GN=MAPK8IP3 PE=1 SV=3
Length = 1336
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 75/86 (87%)
Query: 15 SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVEL 74
S VMSE+V LAGSIY+EFE++I YDE+VVK+LMPLVVNVLE+LD +ENQEHEVEL
Sbjct: 21 SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVEL 80
Query: 75 ELLREDNEQLVTQYEREKQLRKAADQ 100
ELLREDNEQL+TQYEREK LR+ A++
Sbjct: 81 ELLREDNEQLLTQYEREKALRRQAEE 106
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 1 MELDQETVYGT-HDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
MEL+ VY S VMSE+V LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct: 1 MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60
Query: 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100
LD F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++
Sbjct: 61 LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEE 101
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 1 MELDQETVYGT-HDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
MEL+ VY S VMSE+V LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct: 1 MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60
Query: 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100
LD F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++
Sbjct: 61 LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEE 101
>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1
SV=3
Length = 1157
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 70/97 (72%), Gaps = 2/97 (2%)
Query: 6 ETVYGT--HDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLA 63
E VYG D H MS+KVQ++A +IY+E E MI + ED VK LMPLVVNVLE+LDLA
Sbjct: 22 EIVYGGPGSPDEHRTMSDKVQTMASAIYRELETMIKVHGEDGVKTLMPLVVNVLEALDLA 81
Query: 64 FTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100
+ E E ELE+L+EDNEQL TQYEREK LRK +Q
Sbjct: 82 YLERDEQTAELEMLKEDNEQLQTQYEREKALRKQTEQ 118
>sp|O76878|RIPL_DROME RILP-like protein homolog OS=Drosophila melanogaster GN=CG11448
PE=2 SV=1
Length = 443
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNE 82
V LA I +E+E+++ ++ D V LMP ++N LE L+ T+N+ ++ LR+
Sbjct: 25 VYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENATIQELRDKVA 84
Query: 83 QLVTQYEREKQLRKAADQ 100
QL ++ + + R+ D+
Sbjct: 85 QLESEKLEKAEFRRRFDK 102
>sp|Q5ND29|RILP_MOUSE Rab-interacting lysosomal protein OS=Mus musculus GN=Rilp PE=1
SV=1
Length = 369
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 20 SEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAF---------TENQEH 70
+E V LAG++ E + + ++ D L+PLVV LE L+ A Q+
Sbjct: 24 AELVYHLAGALGTELQGLARRFGPDAAAGLVPLVVRALELLEKAAVGPAPDSLQVSAQQA 83
Query: 71 EVELELLREDNEQL 84
EVEL LRE+N++L
Sbjct: 84 EVELRRLREENQRL 97
>sp|Q0IHE5|RIPL1_XENLA RILP-like protein 1 OS=Xenopus laevis GN=rilpl1 PE=2 SV=1
Length = 394
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67
V +A ++ QEFE++I +Y +V+ LMP VV VLE L++ + N
Sbjct: 19 VYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRN 63
>sp|A0PJP4|RIPL1_XENTR RILP-like protein 1 OS=Xenopus tropicalis GN=rilpl1 PE=2 SV=1
Length = 394
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67
V +A ++ QEFE++I +Y +V+ LMP VV VLE L++ + N
Sbjct: 19 VYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRN 63
>sp|Q869L3|MDN1_DICDI Midasin OS=Dictyostelium discoideum GN=mdn1 PE=3 SV=2
Length = 5900
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 10 GTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69
GT +++ +K+ + +I++ FE I+++++ + K + P+ LE + L+
Sbjct: 4214 GTSKNTN--YKQKLSDIIYNIFKYFENFISRFEDRLAKSIKPIEDKALEFIRLS------ 4265
Query: 70 HEVELELLREDNEQLVTQYEREKQ 93
R D+ +L+TQYER KQ
Sbjct: 4266 --------RWDDNRLLTQYERLKQ 4281
>sp|Q7V6P7|SASA_PROMM Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9313) GN=sasA PE=3 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 24 QSLAGS-IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ-EHEVELELLREDN 81
Q AGS I+Q+ + IT++ +D+V + L + E LD + T+ + + E +L +LR++N
Sbjct: 78 QVFAGSSIFQQLQNWITRWQQDIVVTGLGLSLRPTE-LDGSRTQRELQLEDQLLVLRQEN 136
Query: 82 EQLVTQYE-REKQLRKAADQI 101
E L+ + +E+ LR A ++
Sbjct: 137 ETLIDRLNAQERTLRMVAHEL 157
>sp|A2C884|SASA_PROM3 Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9303) GN=sasA PE=3 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 24 QSLAGS-IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ-EHEVELELLREDN 81
Q AGS I+Q+ + IT++ +D+V + L + E LD + T+ + + E +L +LR++N
Sbjct: 78 QVFAGSSIFQQLQNWITRWQQDIVVTGLGLSLRPTE-LDGSRTQRELQLEDQLLVLRQEN 136
Query: 82 EQLVTQYE-REKQLRKAADQI 101
E L+ + +E+ LR A ++
Sbjct: 137 ETLIDRLNAQERTLRMVAHEL 157
>sp|D3ZUQ0|RIPL1_RAT RILP-like protein 1 OS=Rattus norvegicus GN=Rilpl1 PE=1 SV=1
Length = 406
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELEL 76
V +A + EFE++I ++ + + LMP VV VLE L++ + H V EL
Sbjct: 27 VYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVS---RHHVAPEL 77
>sp|Q5EBL4|RIPL1_HUMAN RILP-like protein 1 OS=Homo sapiens GN=RILPL1 PE=1 SV=1
Length = 403
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
V +A + EFE++I ++ + + LMP VV VLE L++
Sbjct: 27 VYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEV 66
>sp|Q9JJC6|RIPL1_MOUSE RILP-like protein 1 OS=Mus musculus GN=Rilpl1 PE=1 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELEL 76
V +A + EFE++I ++ + + LMP VV VLE L++ + H V EL
Sbjct: 27 VYDIASLVGHEFERVIDQHGCESIARLMPKVVRVLEILEVLVS---RHHVAPEL 77
>sp|Q72V65|SPEE_LEPIC Probable spermidine synthase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=speE PE=3 SV=1
Length = 498
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 40 KYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91
++ +D KDL L + LES+ F ++ V +E+ R DN+ LV Y+RE
Sbjct: 443 QFKKDFPKDLKFLNIQELESIQ-TFPQDMS-RVPVEINRLDNQALVRYYDRE 492
>sp|Q17QG3|RIPL1_BOVIN RILP-like protein 1 OS=Bos taurus GN=RILPL1 PE=2 SV=1
Length = 403
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
V +A + EFE++I ++ + + L+P VV VLE L++
Sbjct: 27 VYDIASLVGHEFERVIDQHGCEAIARLIPKVVRVLEILEV 66
>sp|B0K0Z5|SYS_THEPX Serine--tRNA ligase OS=Thermoanaerobacter sp. (strain X514) GN=serS
PE=3 SV=1
Length = 423
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 31 YQEFEKMITKYDEDVVKDL-MPLVVNVLESLDLAFTENQEHEVELEL 76
Y+E EKM T+ E+V++ L +P V V+ + DL FT ++++++E+ +
Sbjct: 295 YEELEKM-TRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIEVWM 340
>sp|B0KAI8|SYS_THEP3 Serine--tRNA ligase OS=Thermoanaerobacter pseudethanolicus (strain
ATCC 33223 / 39E) GN=serS PE=3 SV=1
Length = 423
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 31 YQEFEKMITKYDEDVVKDL-MPLVVNVLESLDLAFTENQEHEVELEL 76
Y+E EKM T+ E+V++ L +P V V+ + DL FT ++++++E+ +
Sbjct: 295 YEELEKM-TRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIEVWM 340
>sp|B2G575|SYS_LACRJ Serine--tRNA ligase OS=Lactobacillus reuteri (strain JCM 1112)
GN=serS PE=3 SV=1
Length = 435
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 31 YQEFEKMITKYDEDVVKDL-MPLVVNVLESLDLAFTENQEHEVELEL 76
+ E EKM T E+++K L +P V L + D++FT ++ H++EL +
Sbjct: 295 WDELEKM-TANAENILKKLNLPYHVITLTTGDMSFTASETHDLELWM 340
>sp|A5VHP5|SYS_LACRD Serine--tRNA ligase OS=Lactobacillus reuteri (strain DSM 20016)
GN=serS PE=3 SV=1
Length = 435
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 31 YQEFEKMITKYDEDVVKDL-MPLVVNVLESLDLAFTENQEHEVELEL 76
+ E EKM T E+++K L +P V L + D++FT ++ H++EL +
Sbjct: 295 WDELEKM-TANAENILKKLNLPYHVITLTTGDMSFTASETHDLELWM 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,250,604
Number of Sequences: 539616
Number of extensions: 1227859
Number of successful extensions: 5701
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 5568
Number of HSP's gapped (non-prelim): 198
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)