Query psy13296
Match_columns 101
No_of_seqs 84 out of 86
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 15:48:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09744 Jnk-SapK_ap_N: JNK_SA 100.0 2.7E-33 5.8E-38 207.6 9.7 78 23-100 1-78 (158)
2 KOG2077|consensus 100.0 4.2E-30 9.1E-35 222.6 9.9 82 19-100 1-82 (832)
3 PF05164 ZapA: Cell division p 86.6 6.2 0.00013 25.1 8.2 68 20-89 20-89 (89)
4 PF14931 IFT20: Intraflagellar 85.2 12 0.00025 26.9 10.1 81 8-90 3-105 (120)
5 TIGR02894 DNA_bind_RsfA transc 80.3 11 0.00025 28.7 7.1 41 50-90 82-129 (161)
6 PF03980 Nnf1: Nnf1 ; InterPr 77.2 20 0.00042 24.2 8.6 61 21-91 10-106 (109)
7 PF06304 DUF1048: Protein of u 76.1 7 0.00015 27.5 4.6 41 29-69 26-66 (103)
8 PF06005 DUF904: Protein of un 75.4 20 0.00044 23.5 8.2 51 46-96 6-56 (72)
9 PRK14127 cell division protein 73.6 6 0.00013 28.2 3.8 55 30-87 12-66 (109)
10 PF12808 Mto2_bdg: Micro-tubul 71.2 6.9 0.00015 24.7 3.3 28 67-94 24-51 (52)
11 PF00038 Filament: Intermediat 68.9 19 0.00041 27.9 6.0 43 57-99 60-102 (312)
12 PRK13169 DNA replication intia 63.6 51 0.0011 23.4 6.9 41 51-91 15-55 (110)
13 PF06156 DUF972: Protein of un 61.2 54 0.0012 23.0 6.9 39 53-91 17-55 (107)
14 PF06698 DUF1192: Protein of u 59.6 28 0.0006 22.4 4.5 33 68-100 24-56 (59)
15 PF03489 SapB_2: Saposin-like 55.3 12 0.00026 20.4 2.0 19 32-50 2-20 (35)
16 PF04136 Sec34: Sec34-like fam 54.8 82 0.0018 23.1 8.1 66 31-100 2-67 (157)
17 PF05121 GvpK: Gas vesicle pro 54.8 47 0.001 23.1 5.3 24 42-65 7-30 (88)
18 PF10224 DUF2205: Predicted co 54.7 64 0.0014 21.8 6.5 48 39-86 11-58 (80)
19 PF02344 Myc-LZ: Myc leucine z 53.8 39 0.00085 19.6 4.0 25 66-90 2-26 (32)
20 TIGR00219 mreC rod shape-deter 53.1 1E+02 0.0023 24.5 7.7 39 53-91 61-99 (283)
21 COG5509 Uncharacterized small 51.8 32 0.00069 22.8 3.9 32 69-100 29-60 (65)
22 PF12709 Kinetocho_Slk19: Cent 51.0 49 0.0011 22.9 4.9 31 65-95 49-79 (87)
23 PF06632 XRCC4: DNA double-str 49.9 58 0.0013 27.2 6.0 36 55-90 134-169 (342)
24 PF05615 THOC7: Tho complex su 47.9 94 0.002 21.7 9.6 40 60-99 76-115 (139)
25 PF06810 Phage_GP20: Phage min 47.9 1.1E+02 0.0024 22.5 8.0 52 35-89 5-61 (155)
26 PF11101 DUF2884: Protein of u 47.7 1.3E+02 0.0028 23.3 8.5 35 23-57 126-160 (229)
27 KOG2228|consensus 46.6 31 0.00067 29.9 4.0 36 28-63 321-356 (408)
28 PF05103 DivIVA: DivIVA protei 46.4 6.1 0.00013 26.8 -0.2 52 30-84 7-58 (131)
29 PRK15422 septal ring assembly 45.1 99 0.0021 21.2 6.1 18 70-87 23-40 (79)
30 TIGR01069 mutS2 MutS2 family p 43.6 2.6E+02 0.0056 25.6 9.5 16 19-34 494-509 (771)
31 PRK14127 cell division protein 42.9 72 0.0016 22.6 4.9 33 58-90 30-62 (109)
32 PF14335 DUF4391: Domain of un 42.0 49 0.0011 25.1 4.2 33 67-99 177-209 (221)
33 PF00306 ATP-synt_ab_C: ATP sy 41.3 38 0.00082 22.9 3.1 38 31-68 14-51 (113)
34 TIGR02449 conserved hypothetic 41.3 1E+02 0.0022 20.2 7.0 44 47-90 3-46 (65)
35 TIGR01039 atpD ATP synthase, F 40.9 93 0.002 27.1 6.1 68 17-84 349-432 (461)
36 PF14197 Cep57_CLD_2: Centroso 40.0 79 0.0017 20.5 4.4 14 73-86 48-61 (69)
37 PRK00888 ftsB cell division pr 39.3 81 0.0018 21.8 4.6 22 69-90 38-59 (105)
38 COG4817 DNA-binding ferritin-l 37.5 67 0.0015 23.3 4.0 39 30-69 32-70 (111)
39 KOG1248|consensus 37.4 34 0.00074 33.2 3.2 23 29-51 888-910 (1176)
40 PF14915 CCDC144C: CCDC144C pr 36.8 84 0.0018 26.3 5.0 30 68-97 59-88 (305)
41 PRK09280 F0F1 ATP synthase sub 36.3 1E+02 0.0022 26.8 5.6 70 16-85 349-434 (463)
42 PF00170 bZIP_1: bZIP transcri 35.9 1E+02 0.0023 18.8 4.8 25 63-87 38-62 (64)
43 PF10965 DUF2767: Protein of u 35.6 62 0.0013 21.6 3.3 37 21-58 32-68 (69)
44 smart00338 BRLZ basic region l 35.5 1E+02 0.0022 18.9 4.2 22 66-87 41-62 (65)
45 PF02183 HALZ: Homeobox associ 35.3 1E+02 0.0022 18.5 4.4 16 72-87 19-34 (45)
46 COG3599 DivIVA Cell division i 35.3 1.2E+02 0.0026 23.7 5.4 52 28-82 10-61 (212)
47 COG3074 Uncharacterized protei 34.9 1.5E+02 0.0032 20.3 5.9 17 70-86 23-39 (79)
48 PF15035 Rootletin: Ciliary ro 33.2 1.8E+02 0.004 22.0 6.0 65 17-91 56-121 (182)
49 PRK00409 recombination and DNA 32.6 1.6E+02 0.0035 26.9 6.5 14 19-32 499-512 (782)
50 KOG2070|consensus 32.6 96 0.0021 28.3 5.0 32 68-99 619-650 (661)
51 COG5215 KAP95 Karyopherin (imp 32.3 80 0.0017 29.5 4.5 42 23-64 569-613 (858)
52 PF04912 Dynamitin: Dynamitin 32.2 2.9E+02 0.0062 22.7 7.6 50 44-93 308-357 (388)
53 PF08518 GIT_SHD: Spa2 homolog 32.0 59 0.0013 18.5 2.5 16 21-36 11-26 (31)
54 PF04999 FtsL: Cell division p 31.4 1.2E+02 0.0026 19.8 4.3 25 66-90 43-67 (97)
55 PRK13922 rod shape-determining 31.2 2.4E+02 0.0053 21.6 9.9 58 22-84 38-95 (276)
56 COG3200 AroG 3-deoxy-D-arabino 31.2 27 0.00058 30.4 1.3 38 22-59 298-339 (445)
57 PF04977 DivIC: Septum formati 31.1 1.3E+02 0.0028 18.4 5.5 22 67-88 26-47 (80)
58 smart00340 HALZ homeobox assoc 31.1 63 0.0014 20.0 2.6 19 61-79 15-33 (44)
59 KOG3107|consensus 30.9 23 0.00051 31.0 0.9 24 21-45 400-425 (468)
60 TIGR01069 mutS2 MutS2 family p 30.7 4.2E+02 0.0092 24.3 10.2 13 28-40 496-508 (771)
61 PF14818 DUF4482: Domain of un 30.6 1.1E+02 0.0025 22.8 4.4 37 57-97 19-55 (141)
62 KOG0978|consensus 29.9 2.1E+02 0.0046 26.5 6.8 50 51-100 559-608 (698)
63 PF07716 bZIP_2: Basic region 29.8 1.1E+02 0.0025 18.2 3.7 22 68-89 28-49 (54)
64 COG4077 Uncharacterized protei 29.4 1.8E+02 0.0038 22.2 5.3 42 29-70 51-92 (156)
65 smart00224 GGL G protein gamma 29.0 27 0.00058 22.1 0.8 18 75-92 2-19 (63)
66 PF09304 Cortex-I_coil: Cortex 29.0 2.2E+02 0.0048 20.4 6.1 34 62-95 48-81 (107)
67 COG1938 Archaeal enzymes of AT 28.4 1.5E+02 0.0033 23.9 5.1 51 40-94 183-233 (244)
68 PRK13922 rod shape-determining 28.1 2.8E+02 0.0061 21.3 7.9 20 69-88 73-92 (276)
69 PF08826 DMPK_coil: DMPK coile 27.8 1.3E+02 0.0029 19.3 3.9 25 60-84 34-58 (61)
70 PF12390 Se-cys_synth_N: Selen 27.7 1.1E+02 0.0025 17.4 3.2 22 33-54 15-36 (40)
71 KOG0570|consensus 27.1 3.2E+02 0.0068 22.0 6.6 20 47-66 81-100 (223)
72 cd00089 HR1 Protein kinase C-r 26.8 1.5E+02 0.0033 18.5 4.0 55 19-83 7-67 (72)
73 smart00417 H4 Histone H4. 26.6 70 0.0015 21.3 2.4 23 26-48 31-53 (74)
74 PF07334 IFP_35_N: Interferon- 26.5 1.4E+02 0.0031 20.1 4.0 26 60-85 2-27 (76)
75 cd00076 H4 Histone H4, one of 26.4 71 0.0015 21.7 2.5 28 23-50 28-55 (85)
76 PF00990 GGDEF: GGDEF domain; 25.7 88 0.0019 20.1 2.8 28 33-60 42-69 (161)
77 COG0146 HyuB N-methylhydantoin 24.8 84 0.0018 28.3 3.3 25 31-55 194-218 (563)
78 COG4026 Uncharacterized protei 24.7 4.1E+02 0.0088 22.0 7.2 15 25-39 73-87 (290)
79 TIGR03752 conj_TIGR03752 integ 24.7 2E+02 0.0043 25.4 5.5 36 44-79 59-94 (472)
80 PRK00039 ruvC Holliday junctio 24.4 61 0.0013 23.9 2.0 27 16-46 39-65 (164)
81 PF11626 Rap1_C: TRF2-interact 24.4 73 0.0016 20.9 2.2 25 24-48 56-80 (87)
82 PF03670 UPF0184: Uncharacteri 24.0 2.4E+02 0.0051 19.4 4.7 33 60-92 42-74 (83)
83 TIGR00228 ruvC crossover junct 23.9 55 0.0012 24.4 1.7 27 17-47 36-62 (156)
84 cd09238 V_Alix_like_1 Protein- 23.7 1.9E+02 0.0041 23.5 4.9 56 33-88 159-218 (339)
85 PF00038 Filament: Intermediat 23.7 3.5E+02 0.0075 20.9 10.8 40 20-59 164-203 (312)
86 PF09969 DUF2203: Uncharacteri 23.6 2.7E+02 0.0059 19.7 6.6 37 41-77 3-39 (120)
87 PRK10803 tol-pal system protei 23.3 2.2E+02 0.0047 22.4 5.1 37 54-90 42-79 (263)
88 PF09727 CortBP2: Cortactin-bi 23.2 1.4E+02 0.003 23.3 3.9 26 74-99 136-161 (192)
89 PF03522 KCl_Cotrans_1: K-Cl C 23.2 32 0.0007 19.7 0.3 19 6-24 11-29 (30)
90 TIGR02209 ftsL_broad cell divi 23.1 2E+02 0.0044 18.0 5.7 29 62-90 28-56 (85)
91 PRK14151 heat shock protein Gr 23.1 3.3E+02 0.0073 20.5 6.3 53 42-94 11-63 (176)
92 PF05377 FlaC_arch: Flagella a 23.0 2.1E+02 0.0046 18.2 4.4 30 60-89 16-45 (55)
93 PF10174 Cast: RIM-binding pro 22.9 5E+02 0.011 24.3 7.8 79 20-99 73-155 (775)
94 cd08318 Death_NMPP84 Death dom 22.7 1.4E+02 0.0031 19.5 3.4 27 17-43 4-30 (86)
95 COG1458 Predicted DNA-binding 22.7 60 0.0013 26.0 1.8 16 29-44 54-69 (221)
96 PF15220 HILPDA: Hypoxia-induc 22.6 1.4E+02 0.0031 19.5 3.2 29 37-65 4-32 (63)
97 PRK05926 hypothetical protein; 22.6 29 0.00062 28.7 0.0 39 9-47 320-364 (370)
98 PF02179 BAG: BAG domain; Int 22.6 2.1E+02 0.0047 18.1 7.7 42 23-64 2-47 (76)
99 cd00529 RuvC_resolvase Hollida 22.5 72 0.0016 22.8 2.1 26 17-46 38-63 (154)
100 PF00249 Myb_DNA-binding: Myb- 22.4 69 0.0015 18.3 1.6 18 34-51 12-32 (48)
101 PF05700 BCAS2: Breast carcino 22.3 3.6E+02 0.0078 20.6 7.5 29 37-65 125-153 (221)
102 COG4942 Membrane-bound metallo 22.2 2.8E+02 0.0061 24.1 5.9 38 59-96 186-223 (420)
103 KOG4571|consensus 22.1 2E+02 0.0043 24.0 4.8 30 68-97 251-283 (294)
104 PF00103 Hormone_1: Somatotrop 22.1 81 0.0018 24.0 2.4 73 16-88 35-150 (214)
105 PF11559 ADIP: Afadin- and alp 22.0 2.9E+02 0.0063 19.4 7.8 40 48-87 42-81 (151)
106 PTZ00015 histone H4; Provision 21.9 77 0.0017 22.3 2.1 25 26-50 48-72 (102)
107 PRK12597 F0F1 ATP synthase sub 21.8 2.9E+02 0.0062 24.0 5.9 68 18-85 350-433 (461)
108 PF05276 SH3BP5: SH3 domain-bi 21.8 2.2E+02 0.0049 22.6 4.9 40 48-87 4-43 (239)
109 PF12162 STAT1_TAZ2bind: STAT1 21.8 61 0.0013 17.6 1.2 12 14-25 5-16 (23)
110 COG2433 Uncharacterized conser 21.4 1.9E+02 0.0041 26.6 4.8 33 58-90 429-461 (652)
111 PF10514 Bcl-2_BAD: Pro-apopto 21.4 58 0.0013 25.1 1.4 27 27-55 107-133 (167)
112 PF02538 Hydantoinase_B: Hydan 21.3 1.2E+02 0.0025 26.3 3.4 27 32-58 196-222 (527)
113 TIGR03305 alt_F1F0_F1_bet alte 21.3 2.5E+02 0.0054 24.3 5.4 52 16-67 343-400 (449)
114 TIGR02135 phoU_full phosphate 21.2 3E+02 0.0064 19.2 8.4 66 21-87 89-160 (212)
115 PF09311 Rab5-bind: Rabaptin-l 21.1 67 0.0015 23.9 1.7 37 53-89 10-46 (181)
116 PF08172 CASP_C: CASP C termin 21.1 2E+02 0.0043 22.9 4.4 41 44-84 75-126 (248)
117 KOG4001|consensus 21.1 1.7E+02 0.0038 23.8 4.1 24 67-90 230-253 (259)
118 PRK10884 SH3 domain-containing 21.0 4E+02 0.0086 20.6 10.2 30 63-92 137-166 (206)
119 KOG0288|consensus 21.0 2.3E+02 0.005 25.0 5.1 30 61-90 44-73 (459)
120 PRK04778 septation ring format 21.0 4.9E+02 0.011 22.6 7.2 48 51-100 263-310 (569)
121 PF02075 RuvC: Crossover junct 20.8 61 0.0013 23.3 1.4 27 16-46 36-62 (149)
122 PF15058 Speriolin_N: Sperioli 20.8 1.5E+02 0.0034 23.4 3.7 24 57-80 11-34 (200)
123 cd00068 GGL G protein gamma su 20.7 55 0.0012 20.2 1.0 18 75-92 2-19 (57)
124 KOG4378|consensus 20.6 1.1E+02 0.0023 28.0 3.1 22 65-86 650-671 (673)
125 PF10212 TTKRSYEDQ: Predicted 20.3 6.4E+02 0.014 22.7 8.6 21 35-55 411-431 (518)
126 PF07539 DRIM: Down-regulated 20.0 85 0.0018 22.7 2.0 16 43-58 83-98 (141)
No 1
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=100.00 E-value=2.7e-33 Score=207.55 Aligned_cols=78 Identities=65% Similarity=0.891 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
||+||++||+|||+||++||+|+|+||||+||+|||+||+++++|++++.++++|+++|++|.+||++||++||++++
T Consensus 1 Vy~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 1 VYDLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred ChHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>KOG2077|consensus
Probab=99.96 E-value=4.2e-30 Score=222.60 Aligned_cols=82 Identities=74% Similarity=1.083 Sum_probs=81.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13296 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAA 98 (101)
Q Consensus 19 ~se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~a 98 (101)
||++|+.||++||+||||||..||+++|+.|||+||||||+||+.+++|+++++||++||+||+||++||||||.+|+++
T Consensus 1 MSerVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~ 80 (832)
T KOG2077|consen 1 MSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQL 80 (832)
T ss_pred CchhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy13296 99 DQ 100 (101)
Q Consensus 99 e~ 100 (101)
+|
T Consensus 81 eq 82 (832)
T KOG2077|consen 81 EQ 82 (832)
T ss_pred Hh
Confidence 97
No 3
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=86.64 E-value=6.2 Score=25.08 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHH--HHHHHHHHHHHHHH
Q psy13296 20 SEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELE--LLREDNEQLVTQYE 89 (101)
Q Consensus 20 se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele--~LreeneqL~~qlE 89 (101)
.+.+..+|.-|-..+..+-..|+. .....-.+.-+|-..+.+.....+.....+ .+++..+.|..++|
T Consensus 20 ee~l~~~a~~i~~~i~~~~~~~~~--~~~~~~~vlaaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 20 EEYLRKAAELINEKINEIKKKYPK--LSPERLAVLAALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCT--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 366889999999999999999873 344444677788877777765554444444 78888888877664
No 4
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=85.23 E-value=12 Score=26.91 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=52.8
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHh---------h------------
Q psy13296 8 VYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFT---------E------------ 66 (101)
Q Consensus 8 ~~~~~~~~~~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~---------~------------ 66 (101)
+|-|+..--.++.|++|+-+..+-.|+...+++-+ ....++--++.+++.+..-+- +
T Consensus 3 l~fDe~~kiRVldp~~~~~t~~Lk~ec~~F~~ki~--~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~ 80 (120)
T PF14931_consen 3 LYFDEENKIRVLDPEKADQTQELKEECKEFVEKIS--EFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREA 80 (120)
T ss_pred eeecCCCCeeecChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 56666667789999999999999998888877765 334444445555554431111 1
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 67 -NQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 67 -~~~~~~ele~LreeneqL~~qlEr 90 (101)
.+.+...+.+.+.+.++|..+|+.
T Consensus 81 ~~q~lq~~I~Ek~~eLERl~~E~~s 105 (120)
T PF14931_consen 81 QQQQLQALIAEKKMELERLRSEYES 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455566667777777777654
No 5
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.31 E-value=11 Score=28.69 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 50 MPLVVNVLESLDLA-------FTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 50 mP~VV~vLE~Le~~-------~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
|.-||..|..|.+. ..+|+.+..++..|+..|++|..++++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999864 345666677777777777777666554
No 6
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.18 E-value=20 Score=24.24 Aligned_cols=61 Identities=28% Similarity=0.456 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHh-----------------------------------
Q psy13296 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFT----------------------------------- 65 (101)
Q Consensus 21 e~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~----------------------------------- 65 (101)
.-+..+-..+-+||+.|++-+. |+.-|-.||.++.
T Consensus 10 Q~~~~l~~~~~~Ef~~I~~Er~----------v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~ 79 (109)
T PF03980_consen 10 QMIEFLEENCKKEFEEILEERD----------VVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKK 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHH
Confidence 3456677888899999988764 3334444443333
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13296 66 -ENQEHEVELELLREDNEQLVTQYERE 91 (101)
Q Consensus 66 -~~~~~~~ele~LreeneqL~~qlErE 91 (101)
....++..++.+..+|.+|..++..-
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24556777888888888888877643
No 7
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=76.10 E-value=7 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhh
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~ 69 (101)
.+|.++++-+-.||.-.-..+||.+-.+|++++..+++...
T Consensus 26 ~ay~~i~~Yl~~~~~~~g~~~~~il~dildlfEe~aadG~~ 66 (103)
T PF06304_consen 26 IAYKAIQKYLWYFGPTDGRDMMEILSDILDLFEEAAADGKS 66 (103)
T ss_dssp HHHHHHHHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999999777889999999999999999887653
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.37 E-value=20 Score=23.54 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 46 VKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRK 96 (101)
Q Consensus 46 V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk 96 (101)
...|=-+|-.+++....+-.++.++..+-..|.++|+.|..+.++=|+-|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777877777777777777655555556666555555444443
No 9
>PRK14127 cell division protein GpsB; Provisional
Probab=73.60 E-value=6 Score=28.17 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 30 Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
..++|.+-++.|.++-|...+-.|+.-+|.| ..++.++..++..|+....++..+
T Consensus 12 ~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l---~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 12 LEKEFKTSMRGYDQDEVDKFLDDVIKDYEAF---QKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred hhCccCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888889999999999999888766554 556666666777777765555443
No 10
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=71.23 E-value=6.9 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 67 NQEHEVELELLREDNEQLVTQYEREKQL 94 (101)
Q Consensus 67 ~~~~~~ele~LreeneqL~~qlErEK~l 94 (101)
+.....++..|..+|..|..++++++.+
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4557789999999999999999998865
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.94 E-value=19 Score=27.89 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=37.2
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 57 LE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
=..++.+..++..+..++.-++.+.+++..+|+.+++.++.++
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888999999999999999999999999888765
No 12
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.65 E-value=51 Score=23.44 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13296 51 PLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91 (101)
Q Consensus 51 P~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErE 91 (101)
-.+=..+..|..+-..-.+.-.|=..|+-+|++|+..+...
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444455554444444555556666677776666653
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.17 E-value=54 Score=22.97 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13296 53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91 (101)
Q Consensus 53 VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErE 91 (101)
+-..+..+..+-..-.++-.|=..|+-+|++|+..+...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555666666666666554
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.60 E-value=28 Score=22.40 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
.+++..+..|+.|..++.+.+.+-+..|..|+.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999988874
No 15
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=55.25 E-value=12 Score=20.45 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=14.3
Q ss_pred HHHHHHHHhhChhHHhhHH
Q psy13296 32 QEFEKMITKYDEDVVKDLM 50 (101)
Q Consensus 32 ~EfE~lI~~yG~d~V~~Lm 50 (101)
++.+.+++.||+..+..|+
T Consensus 2 ~~C~~~V~~y~~~ii~~l~ 20 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLE 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4667889999987776654
No 16
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=54.81 E-value=82 Score=23.05 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 31 y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
|++....+..|.. ....+.-.+-.++..|+.+...-......-..|.+..++|+.+. +++.+.|++
T Consensus 2 y~~y~~~L~~~~~-~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq---~~L~~~ae~ 67 (157)
T PF04136_consen 2 YRQYLDYLQQYRE-ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQ---TRLEELAEE 67 (157)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3444455555554 45567888888999999988887778888888888888886543 444444443
No 17
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=54.78 E-value=47 Score=23.07 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred ChhHHhhHHHHHHHHHHhHHHHHh
Q psy13296 42 DEDVVKDLMPLVVNVLESLDLAFT 65 (101)
Q Consensus 42 G~d~V~~LmP~VV~vLE~Le~~~~ 65 (101)
..++=.||.|+|+.|.|+|--+.-
T Consensus 7 ~~~v~~gL~~LVLtvVELLRqlmE 30 (88)
T PF05121_consen 7 PDNVERGLARLVLTVVELLRQLME 30 (88)
T ss_pred hHHHhccHHHHHHHHHHHHHHHHH
Confidence 345667999999999999986654
No 18
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=54.71 E-value=64 Score=21.80 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=38.5
Q ss_pred HhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy13296 39 TKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVT 86 (101)
Q Consensus 39 ~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~ 86 (101)
.++|.+.-..|.-.+...=..|+.+..+-.....+-+.|+.+|+-|..
T Consensus 11 e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 11 EKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888888888888888888888899998887754
No 19
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=53.83 E-value=39 Score=19.63 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 66 ENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 66 ~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+.+.+-.+-+.||..++||...+|.
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeq 26 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQ 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888899999988887764
No 20
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.06 E-value=1e+02 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13296 53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91 (101)
Q Consensus 53 VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErE 91 (101)
+.+-+..+..+..+|+++..++..|+.+.+.+...+++|
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~E 99 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQE 99 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777666644444433334444
No 21
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=51.85 E-value=32 Score=22.80 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 69 EHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 69 ~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
+++..+..|+++.++|..++-+-+..|..||-
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAea 60 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 46778999999999999999998888888763
No 22
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.05 E-value=49 Score=22.93 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 65 TENQEHEVELELLREDNEQLVTQYEREKQLR 95 (101)
Q Consensus 65 ~~~~~~~~ele~LreeneqL~~qlErEK~lr 95 (101)
.+..+++.++..|..+|++|..+++.+..-.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999988776543
No 23
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=49.88 E-value=58 Score=27.15 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 55 ~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+.|.....+...+..+..+-+.|+.+.++++.|||+
T Consensus 134 ~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~ 169 (342)
T PF06632_consen 134 WCLDANSRLQAENEHLQKENERLESEANKLLKQLEK 169 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555566666666677776654
No 24
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=47.95 E-value=94 Score=21.72 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
++.+...+.+...+++..+.+.++|..+|+..|..|++=+
T Consensus 76 ~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 76 RENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677888999999999999999999999987643
No 25
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.90 E-value=1.1e+02 Score=22.48 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHhhChhH--HhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHH---HHHHHHHHHH
Q psy13296 35 EKMITKYDEDV--VKDLMPLVVNVLESLDLAFTENQEHEVELELLRE---DNEQLVTQYE 89 (101)
Q Consensus 35 E~lI~~yG~d~--V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lre---eneqL~~qlE 89 (101)
..++..||.+. .+.=.+.+.. .++++-++....+.++..|+. +|+.|..+++
T Consensus 5 ~~Im~~~gk~i~~~K~~~~~~~~---e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~ 61 (155)
T PF06810_consen 5 DKIMAENGKDIEAPKAKVDKVKE---ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIE 61 (155)
T ss_pred HHHHHHccCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 45666666666 3444444433 344444444444444555544 5555554433
No 26
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=47.73 E-value=1.3e+02 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHH
Q psy13296 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVL 57 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vL 57 (101)
...+-....+|||+-|...=.+++.++|.-+.+-+
T Consensus 126 ~~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m 160 (229)
T PF11101_consen 126 FSQLDEFFDQEFEQAIEQLVQESMGSILQALGNEM 160 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478888899999999999999999998888877
No 27
>KOG2228|consensus
Probab=46.60 E-value=31 Score=29.87 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHH
Q psy13296 28 GSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLA 63 (101)
Q Consensus 28 ~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~ 63 (101)
..+|.||+++|+.-.+-+---.=|-|++++|.|-++
T Consensus 321 ~lvY~EfrK~iksi~hTs~~~~k~vvlnAfEhL~sl 356 (408)
T KOG2228|consen 321 NLVYAEFRKFIKSIAHTSELWAKTVVLNAFEHLRSL 356 (408)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhhe
Confidence 478999999999856666566678899999998743
No 28
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=46.38 E-value=6.1 Score=26.83 Aligned_cols=52 Identities=37% Similarity=0.503 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy13296 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQL 84 (101)
Q Consensus 30 Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL 84 (101)
..++|.+-+..|.++-|...+-.|..-++.|. .++..+..++..|+..+.++
T Consensus 7 ~~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~---~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 7 RNKEFKKSMRGYDPDEVDDFLDELAEELERLQ---RENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HH----EEEEEEEHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCT----
T ss_pred hhCccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhh
Confidence 46789999999999999999988887776665 45555555555555554443
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.06 E-value=99 Score=21.17 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy13296 70 HEVELELLREDNEQLVTQ 87 (101)
Q Consensus 70 ~~~ele~LreeneqL~~q 87 (101)
+.-++++||++|..|..+
T Consensus 23 LqmEieELKekn~~L~~e 40 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666677766666554
No 30
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.62 E-value=2.6e+02 Score=25.60 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=9.8
Q ss_pred cCHHHHHHHHHHHHHH
Q psy13296 19 MSEKVQSLAGSIYQEF 34 (101)
Q Consensus 19 ~se~Vy~lA~~Iy~Ef 34 (101)
++++|-+-|..++.+.
T Consensus 494 lp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 494 IPHFIIEQAKTFYGEF 509 (771)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 5666766666665543
No 31
>PRK14127 cell division protein GpsB; Provisional
Probab=42.95 E-value=72 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=25.2
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 58 E~Le~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+-||..+..-+.+..+...|+++|.+|..++..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777888888888888888777543
No 32
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=41.96 E-value=49 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 67 NQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 67 ~~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
..+...+++.|..+..+|..+.-+|||..++.|
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkve 209 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVE 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 334566788999999999999999999988765
No 33
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=41.32 E-value=38 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhh
Q psy13296 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ 68 (101)
Q Consensus 31 y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~ 68 (101)
|+|++.++.-+|.|++..=--.++..=+.+..+..+|.
T Consensus 14 ~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~ 51 (113)
T PF00306_consen 14 YRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNA 51 (113)
T ss_dssp HHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BST
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999877777777777777776555543
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.31 E-value=1e+02 Score=20.17 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 47 KDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 47 ~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
..|.-+|=..+..-+.+-.+|..+..++..++.++.+|+.+.+-
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565666666777778888888888888888888777554
No 35
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=40.93 E-value=93 Score=27.10 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=50.2
Q ss_pred cccCHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhh----------hhHHHHHHHHHH
Q psy13296 17 IVMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ----------EHEVELELLRED 80 (101)
Q Consensus 17 ~~~se~Vy~lA~~I------y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~----------~~~~ele~Lree 80 (101)
.+.+++-+.+|+.+ |+|++.||...|.+....-.-..|+.-+.++.+..++. ...+.++.--..
T Consensus 349 ~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~ 428 (461)
T TIGR01039 349 SVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRG 428 (461)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHHHHHHhHHHHHHHhCCCCchhccccCCCCcccCHHHHHHH
Confidence 34478888888765 88999999999977777668888888889998888776 444555555554
Q ss_pred HHHH
Q psy13296 81 NEQL 84 (101)
Q Consensus 81 neqL 84 (101)
..++
T Consensus 429 l~~i 432 (461)
T TIGR01039 429 FKEI 432 (461)
T ss_pred HHHH
Confidence 4444
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.04 E-value=79 Score=20.53 Aligned_cols=14 Identities=43% Similarity=0.518 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy13296 73 ELELLREDNEQLVT 86 (101)
Q Consensus 73 ele~LreeneqL~~ 86 (101)
+...|+++++.|..
T Consensus 48 e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 48 ENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 37
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.30 E-value=81 Score=21.76 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy13296 69 EHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 69 ~~~~ele~LreeneqL~~qlEr 90 (101)
+.+.++..|+.+|++|..+.++
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 38
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=37.48 E-value=67 Score=23.31 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhh
Q psy13296 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (101)
Q Consensus 30 Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~ 69 (101)
.|+|+++-+=.+| ..=-..||++=+|||++|..+.+..+
T Consensus 32 aykeIqkYlw~~g-~t~~~~~~Il~~iLelfE~aaadgk~ 70 (111)
T COG4817 32 AYKEIQKYLWKSG-PTGWNEMKILGNILELFEEAAADGKE 70 (111)
T ss_pred HHHHHHHHHHHcC-cchhHHHHHHHHHHHHHHHHHhcccc
Confidence 5899999999999 55667899999999999998886543
No 39
>KOG1248|consensus
Probab=37.43 E-value=34 Score=33.21 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhChhHHhhHHH
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLMP 51 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~LmP 51 (101)
.+..=||+||++||.+.+++++|
T Consensus 888 Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHhCHHHHHhhCH
Confidence 35566999999999999999999
No 40
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=36.82 E-value=84 Score=26.31 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13296 68 QEHEVELELLREDNEQLVTQYEREKQLRKA 97 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlErEK~lrk~ 97 (101)
-.++.+|.-|+.+|-.|-+.+|.||+-+..
T Consensus 59 ~qy~~QLn~L~aENt~L~SkLe~EKq~ker 88 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKLEKEKQNKER 88 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 346788999999999999999999987754
No 41
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=36.34 E-value=1e+02 Score=26.83 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred ccccCHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhh----------hhHHHHHHHHH
Q psy13296 16 HIVMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ----------EHEVELELLRE 79 (101)
Q Consensus 16 ~~~~se~Vy~lA~~I------y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~----------~~~~ele~Lre 79 (101)
..+++++-+.+|+.+ |+|.|.||...|-+....-.-..|+.-+.++.+..++. .....++.--+
T Consensus 349 ~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~ 428 (463)
T PRK09280 349 PLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIR 428 (463)
T ss_pred cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCcchhhcccCCCCcccCHHHHHH
Confidence 356778888888854 78999999999977777778888999999999888775 44455555544
Q ss_pred HHHHHH
Q psy13296 80 DNEQLV 85 (101)
Q Consensus 80 eneqL~ 85 (101)
...+++
T Consensus 429 ~l~~i~ 434 (463)
T PRK09280 429 GFKEIL 434 (463)
T ss_pred HHHHHh
Confidence 444443
No 42
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.89 E-value=1e+02 Score=18.80 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=12.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 63 AFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 63 ~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+.+.|..+..++..|+.++..|..+
T Consensus 38 L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 38 LESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555555443
No 43
>PF10965 DUF2767: Protein of unknown function (DUF2767); InterPro: IPR024493 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=35.57 E-value=62 Score=21.57 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHH
Q psy13296 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58 (101)
Q Consensus 21 e~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE 58 (101)
.+...||+.+.+++.+.+..+.++- ..-|-.+|+.||
T Consensus 32 tk~~~Ia~~LrT~l~~~~~kr~~~~-~~~me~aI~~Le 68 (69)
T PF10965_consen 32 TKRIVIADVLRTELANGRSKRSELQ-QQAMELAIDLLE 68 (69)
T ss_pred chhhHHHHHHHHHHhccccccCHHH-HHHHHHHHHHhh
Confidence 4567788888888888777777665 455677777776
No 44
>smart00338 BRLZ basic region leucin zipper.
Probab=35.50 E-value=1e+02 Score=18.90 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q psy13296 66 ENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 66 ~~~~~~~ele~LreeneqL~~q 87 (101)
.|.++..++..|+.++..|..+
T Consensus 41 en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 41 ENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555544444433
No 45
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.30 E-value=1e+02 Score=18.51 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13296 72 VELELLREDNEQLVTQ 87 (101)
Q Consensus 72 ~ele~LreeneqL~~q 87 (101)
.+-+.|+.+|+.|..+
T Consensus 19 ~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 19 AEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 46
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=35.27 E-value=1.2e+02 Score=23.73 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHH
Q psy13296 28 GSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNE 82 (101)
Q Consensus 28 ~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lreene 82 (101)
...-++|.+-++.|.++=|..++-.|+.-+|.+= ..++++..++..|+.+..
T Consensus 10 dI~ek~F~~~~rGy~~eEVdeFLD~V~~dye~~l---~e~~~l~~~i~~L~~~l~ 61 (212)
T COG3599 10 DITEKEFGTGFRGYDEEEVDEFLDDVIDDYEQLL---DENEDLEDEIDELKEELK 61 (212)
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999988888888777654 455555555555555543
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.89 E-value=1.5e+02 Score=20.28 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy13296 70 HEVELELLREDNEQLVT 86 (101)
Q Consensus 70 ~~~ele~LreeneqL~~ 86 (101)
+.-++++|+++|.+|..
T Consensus 23 LQmEieELKEknn~l~~ 39 (79)
T COG3074 23 LQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHhhHhHH
Confidence 44567777777776543
No 48
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=33.18 E-value=1.8e+02 Score=21.98 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=41.6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHH-HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13296 17 IVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVL-ESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91 (101)
Q Consensus 17 ~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vL-E~Le~~~~~~~~~~~ele~LreeneqL~~qlErE 91 (101)
...|.++..+..-+.-|=.|-. +|-- |-.+| |.||.+...|+.+..++..|+.+-+.+..+++..
T Consensus 56 ~e~s~dLe~~l~rLeEEqqR~~---------~L~q-vN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 56 EEHSPDLEEALIRLEEEQQRSE---------ELAQ-VNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred ccCcccHHHHHHHHHHHHHhHH---------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566665555555544422 2221 22333 7788888888888888999888888888777643
No 49
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.60 E-value=1.6e+02 Score=26.89 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=8.0
Q ss_pred cCHHHHHHHHHHHH
Q psy13296 19 MSEKVQSLAGSIYQ 32 (101)
Q Consensus 19 ~se~Vy~lA~~Iy~ 32 (101)
+++.|-+-|..+..
T Consensus 499 lp~~ii~~A~~~~~ 512 (782)
T PRK00409 499 LPENIIEEAKKLIG 512 (782)
T ss_pred cCHHHHHHHHHHHh
Confidence 55666666665543
No 50
>KOG2070|consensus
Probab=32.56 E-value=96 Score=28.28 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 68 QEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
-.+..++..|+.||.++..++|.|.++|+--|
T Consensus 619 yalkd~v~~lqqd~~kmkk~leeEqkaRrdLe 650 (661)
T KOG2070|consen 619 YALKDEVSELQQDNKKMKKVLEEEQKARRDLE 650 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998655
No 51
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=32.28 E-value=80 Score=29.46 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCh--hHHhh-HHHHHHHHHHhHHHHH
Q psy13296 23 VQSLAGSIYQEFEKMITKYDE--DVVKD-LMPLVVNVLESLDLAF 64 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~--d~V~~-LmP~VV~vLE~Le~~~ 64 (101)
|.++-+.+-.=++.+|+++|+ +-|.. ||-+.++.||.=+...
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~ 613 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTT 613 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCch
Confidence 777788888889999999999 56666 9999999999875433
No 52
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=32.16 E-value=2.9e+02 Score=22.71 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=38.0
Q ss_pred hHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQ 93 (101)
Q Consensus 44 d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~ 93 (101)
+.+..++|.||.=|-.|..++.+......-|..|.....++..++..-++
T Consensus 308 ~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~ 357 (388)
T PF04912_consen 308 DPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEE 357 (388)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999988776677777777776666666654433
No 53
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=32.04 E-value=59 Score=18.50 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13296 21 EKVQSLAGSIYQEFEK 36 (101)
Q Consensus 21 e~Vy~lA~~Iy~EfE~ 36 (101)
....+|+..||.|++|
T Consensus 11 ~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 11 QRFEELATDVYDELDR 26 (31)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999999987
No 54
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.36 E-value=1.2e+02 Score=19.78 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 66 ENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 66 ~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+.+..+.+...|+.+|++|..+..+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888877766443
No 55
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.22 E-value=2.4e+02 Score=21.65 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy13296 22 KVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQL 84 (101)
Q Consensus 22 ~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL 84 (101)
.+......+..-+...+...+. .+--.++.+..+..+..+|.++..++..|+.++.++
T Consensus 38 ~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 38 PVRQVVGDVVSPVQRVVNAPRE-----FVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666655443 233455566667777777777777777777666655
No 56
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=31.15 E-value=27 Score=30.38 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHH----HHHHhhChhHHhhHHHHHHHHHHh
Q psy13296 22 KVQSLAGSIYQEFE----KMITKYDEDVVKDLMPLVVNVLES 59 (101)
Q Consensus 22 ~Vy~lA~~Iy~EfE----~lI~~yG~d~V~~LmP~VV~vLE~ 59 (101)
.+-.++..+--..| .||-++|.|-|...+|++|+..+.
T Consensus 298 ~ll~l~d~LnP~nepGRLtLi~RmG~dKV~d~LP~li~av~~ 339 (445)
T COG3200 298 ELLELIDRLNPHNEPGRLTLIARMGADKVGDRLPPLVEAVEA 339 (445)
T ss_pred HHHHHHHhcCCCCCCceEEeehhhcchHHhhhhhHHHHHHHH
Confidence 34444444433333 478899999999999999998763
No 57
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.15 E-value=1.3e+02 Score=18.37 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q psy13296 67 NQEHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 67 ~~~~~~ele~LreeneqL~~ql 88 (101)
..+.+.+++.++.+|++|..++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554443
No 58
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.12 E-value=63 Score=19.98 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=10.6
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLRE 79 (101)
Q Consensus 61 e~~~~~~~~~~~ele~Lre 79 (101)
+++..+|++++.|+++||.
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455556666666665554
No 59
>KOG3107|consensus
Probab=30.87 E-value=23 Score=30.98 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhChhH
Q psy13296 21 EKVQSLAGSIYQE--FEKMITKYDEDV 45 (101)
Q Consensus 21 e~Vy~lA~~Iy~E--fE~lI~~yG~d~ 45 (101)
|-+|. |..||+| ||||+.+||..+
T Consensus 400 ENIYS-a~kiGKescFerI~~RFg~K~ 425 (468)
T KOG3107|consen 400 ENIYS-ATKIGKESCFERIQSRFGRKV 425 (468)
T ss_pred hhhhh-hhhccHHHHHHHHHHHhCCce
Confidence 33444 5678998 999999999754
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.71 E-value=4.2e+02 Score=24.25 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q psy13296 28 GSIYQEFEKMITK 40 (101)
Q Consensus 28 ~~Iy~EfE~lI~~ 40 (101)
..|-..-++++..
T Consensus 496 ~~ii~~A~~~~~~ 508 (771)
T TIGR01069 496 HFIIEQAKTFYGE 508 (771)
T ss_pred HHHHHHHHHHHHh
Confidence 3444445555544
No 61
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=30.59 E-value=1.1e+02 Score=22.76 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13296 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKA 97 (101)
Q Consensus 57 LE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ 97 (101)
.|+||.|-.+.++-+.....|....+ |+.+|...|+.
T Consensus 19 ~ELLdrfd~ER~eWE~Q~kemq~kie----ql~~e~~~~r~ 55 (141)
T PF14818_consen 19 MELLDRFDRERQEWEQQWKEMQRKIE----QLQKEVKPRRK 55 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcchhhc
Confidence 58899998888888888888888854 45677666643
No 62
>KOG0978|consensus
Probab=29.86 E-value=2.1e+02 Score=26.47 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=38.2
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 51 PLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 51 P~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
-+++.+...++-+.......+..++.++.....+...++.++.-++++|+
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777788888888888888888888888888764
No 63
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.81 E-value=1.1e+02 Score=18.20 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy13296 68 QEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlE 89 (101)
+.++.++..|..+|.+|..++.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888876643
No 64
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.40 E-value=1.8e+02 Score=22.21 Aligned_cols=42 Identities=14% Similarity=-0.004 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhh
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEH 70 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~ 70 (101)
..-.|+...|..||...+.-+=|-.+...+.+|..+++.-+.
T Consensus 51 d~~~el~s~ie~~~v~~ld~es~Eg~elI~e~De~vr~~vei 92 (156)
T COG4077 51 DEEVELYSSIEDYLVKKLDKESFEGVELIKEIDEFVRRIVEI 92 (156)
T ss_pred hHHHHHHHHHHHhhHHHhCccCHHHHHHHHHHHHHHHHHHHh
Confidence 466789999999999999999999999999999888765443
No 65
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=29.02 E-value=27 Score=22.10 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13296 75 ELLREDNEQLVTQYEREK 92 (101)
Q Consensus 75 e~LreeneqL~~qlErEK 92 (101)
+.++.++++|+.++.|++
T Consensus 2 ~~~~~~ve~Lr~el~~~R 19 (63)
T smart00224 2 DQLRKEVEQLRKELSRER 19 (63)
T ss_pred hHHHHHHHHHHHHHCCce
Confidence 467888999988888774
No 66
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.98 E-value=2.2e+02 Score=20.44 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 62 LAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (101)
Q Consensus 62 ~~~~~~~~~~~ele~LreeneqL~~qlErEK~lr 95 (101)
++-.++......+..|+.....++.+++.||.++
T Consensus 48 ~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 48 SLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666778888888888888999988877
No 67
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=28.43 E-value=1.5e+02 Score=23.90 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=30.2
Q ss_pred hhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 40 KYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL 94 (101)
Q Consensus 40 ~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~l 94 (101)
+=++.++..+ |.+|.-|=.+-..-..+..+.+.+++..++|..|++.+...
T Consensus 183 ~PDP~AAa~v----ve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~ 233 (244)
T COG1938 183 RPDPRAAARV----VEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEER 233 (244)
T ss_pred CCChHHHHHH----HHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344554432 33443333333455667777888888888888887766543
No 68
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.13 E-value=2.8e+02 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy13296 69 EHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 69 ~~~~ele~LreeneqL~~ql 88 (101)
+...|-+.|+++|.+|..+.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 73 DLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444443
No 69
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.84 E-value=1.3e+02 Score=19.25 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQL 84 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL 84 (101)
|..+-.+|+++..+++.|+.+.+.+
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555666666666655544
No 70
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=27.74 E-value=1.1e+02 Score=17.39 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.2
Q ss_pred HHHHHHHhhChhHHhhHHHHHH
Q psy13296 33 EFEKMITKYDEDVVKDLMPLVV 54 (101)
Q Consensus 33 EfE~lI~~yG~d~V~~LmP~VV 54 (101)
++..+++.||..+|...+-.++
T Consensus 15 ~~~~l~~~~~r~~v~~~vR~~l 36 (40)
T PF12390_consen 15 EIQDLIERYGRPLVVDAVREVL 36 (40)
T ss_pred hhHHHHHHcCHHHHHHHHHHHH
Confidence 5678899999999988765443
No 71
>KOG0570|consensus
Probab=27.09 E-value=3.2e+02 Score=22.04 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhHHHHHhh
Q psy13296 47 KDLMPLVVNVLESLDLAFTE 66 (101)
Q Consensus 47 ~~LmP~VV~vLE~Le~~~~~ 66 (101)
+=.+-++++.||+++.++..
T Consensus 81 kLnrslllnfleL~~ILi~~ 100 (223)
T KOG0570|consen 81 KLNRSLLLNFLELLDILIRA 100 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33566899999999987763
No 72
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=26.78 E-value=1.5e+02 Score=18.51 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHHHHHH------HHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy13296 19 MSEKVQSLAGSIYQEF------EKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQ 83 (101)
Q Consensus 19 ~se~Vy~lA~~Iy~Ef------E~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lreeneq 83 (101)
+.-++.+|-..|-.|. +.|++.|+..... ..+..+.....+-...++.|+.+.+.
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~----------~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK----------KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666653 5677777766533 23334444444445556666665433
No 73
>smart00417 H4 Histone H4.
Probab=26.56 E-value=70 Score=21.26 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhChhHHhh
Q psy13296 26 LAGSIYQEFEKMITKYDEDVVKD 48 (101)
Q Consensus 26 lA~~Iy~EfE~lI~~yG~d~V~~ 48 (101)
+.+.+|.|+-.++..|+.+.+..
T Consensus 31 IS~~~y~elr~vle~~l~~I~rd 53 (74)
T smart00417 31 ISGLIYDETRNVLKSFLENVVRD 53 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556655555555554443
No 74
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.51 E-value=1.4e+02 Score=20.11 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=16.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLV 85 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~ 85 (101)
|+.+..+|.++..+++.|.++.+++.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667776666655543
No 75
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=26.40 E-value=71 Score=21.67 Aligned_cols=28 Identities=32% Similarity=0.754 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHHhhHH
Q psy13296 23 VQSLAGSIYQEFEKMITKYDEDVVKDLM 50 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~d~V~~Lm 50 (101)
|..+.+.+|.|+..++..|..+.+...+
T Consensus 28 vkRIS~d~y~e~~~~l~~~l~~I~~dav 55 (85)
T cd00076 28 VKRISGGVYDEVRNVLKSYLEDVIRDAV 55 (85)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456777777777777777666554
No 76
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=25.70 E-value=88 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHHhhChhHHhhHHHHHHHHHHhH
Q psy13296 33 EFEKMITKYDEDVVKDLMPLVVNVLESL 60 (101)
Q Consensus 33 EfE~lI~~yG~d~V~~LmP~VV~vLE~L 60 (101)
.|..+.+.||.+....++..+.+.|-..
T Consensus 42 ~~~~l~~~~G~~~~~~~l~~i~~~L~~~ 69 (161)
T PF00990_consen 42 NLDELNEKYGYEVGDEILRQIAKRLKKQ 69 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc
Confidence 4678899999999999999999988754
No 77
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.78 E-value=84 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhChhHHhhHHHHHHH
Q psy13296 31 YQEFEKMITKYDEDVVKDLMPLVVN 55 (101)
Q Consensus 31 y~EfE~lI~~yG~d~V~~LmP~VV~ 55 (101)
-+++.+||++||.+.|...|-.|+.
T Consensus 194 ~~~v~~li~~yG~~~v~~~m~~~~~ 218 (563)
T COG0146 194 RRRVRELIDEYGLDTVEEAMKEVIE 218 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3689999999999999998887764
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.72 E-value=4.1e+02 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy13296 25 SLAGSIYQEFEKMIT 39 (101)
Q Consensus 25 ~lA~~Iy~EfE~lI~ 39 (101)
.||..+..|+..|.+
T Consensus 73 eLA~kf~eeLrg~VG 87 (290)
T COG4026 73 ELAEKFFEELRGMVG 87 (290)
T ss_pred HHHHHHHHHHHHhhh
Confidence 455555555544443
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.72 E-value=2e+02 Score=25.45 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=17.9
Q ss_pred hHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHH
Q psy13296 44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRE 79 (101)
Q Consensus 44 d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lre 79 (101)
|-|..|+-.+-.+=..|..+.++|..+..|-+.||.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544444444455555555555555555544
No 80
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.43 E-value=61 Score=23.92 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=21.0
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhhChhHH
Q psy13296 16 HIVMSEKVQSLAGSIYQEFEKMITKYDEDVV 46 (101)
Q Consensus 16 ~~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V 46 (101)
...+++| -..|+..+..+|+.|.|+.+
T Consensus 39 ~~~~~~R----l~~I~~~l~~~i~~~~Pd~v 65 (164)
T PRK00039 39 DLDLPER----LKQIYDGLSELIDEYQPDEV 65 (164)
T ss_pred CCCHHHH----HHHHHHHHHHHHHHhCCCEE
Confidence 3456666 45678899999999998876
No 81
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=24.41 E-value=73 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHhh
Q psy13296 24 QSLAGSIYQEFEKMITKYDEDVVKD 48 (101)
Q Consensus 24 y~lA~~Iy~EfE~lI~~yG~d~V~~ 48 (101)
..|-+.-..++++|+.+||.+.|..
T Consensus 56 ~~L~~~~~~~~~~L~~khG~~~i~~ 80 (87)
T PF11626_consen 56 EMLRSGDKDDIERLIKKHGEERIER 80 (87)
T ss_dssp HHHTS--HHHHHHHHHHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhCHHHHHH
Confidence 3444446889999999999998763
No 82
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.98 E-value=2.4e+02 Score=19.39 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREK 92 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlErEK 92 (101)
||.+=.+|..+..+|..|=+-|.|.+.++..+.
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445677777888888887777777665544
No 83
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=23.86 E-value=55 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=21.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhChhHHh
Q psy13296 17 IVMSEKVQSLAGSIYQEFEKMITKYDEDVVK 47 (101)
Q Consensus 17 ~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V~ 47 (101)
..+++|.. .||.+++.+|+.|-|+.+.
T Consensus 36 ~~~~~RL~----~I~~~l~~~i~~y~P~~~a 62 (156)
T TIGR00228 36 DDLPSRLK----LIYAGVTEIITQFQPNYFA 62 (156)
T ss_pred CCHHHHHH----HHHHHHHHHHHHhCCCEEE
Confidence 45777764 7899999999999999653
No 84
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=23.70 E-value=1.9e+02 Score=23.47 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHHHhhChhHHhhHHHHH----HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy13296 33 EFEKMITKYDEDVVKDLMPLV----VNVLESLDLAFTENQEHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 33 EfE~lI~~yG~d~V~~LmP~V----V~vLE~Le~~~~~~~~~~~ele~LreeneqL~~ql 88 (101)
+-+..+...+...+...+|.. .+..+...+.+...+..-.+|+.++.++.++...+
T Consensus 159 ~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~L 218 (339)
T cd09238 159 DAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMM 218 (339)
T ss_pred HHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444656666666651 11122233444555555566777777766665555
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.70 E-value=3.5e+02 Score=20.89 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHh
Q psy13296 20 SEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59 (101)
Q Consensus 20 se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~ 59 (101)
+.+....-..|..+|+.+++++-.++-.-.=+++-.+-..
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~ 203 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQ 203 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccc
Confidence 3444555566788999999999988766666665444333
No 86
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.64 E-value=2.7e+02 Score=19.69 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=27.3
Q ss_pred hChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHH
Q psy13296 41 YDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELL 77 (101)
Q Consensus 41 yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~L 77 (101)
|--+-...|+|.|-..++-+-.+..+-.+...++...
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~ 39 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQEL 39 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567788999999999998877777666555555443
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.25 E-value=2.2e+02 Score=22.37 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHH
Q psy13296 54 VNVLESLDLAFTENQ-EHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 54 V~vLE~Le~~~~~~~-~~~~ele~LreeneqL~~qlEr 90 (101)
|.-||.+=...++.. ++...++.|+.|..+|++|+|.
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
No 88
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=23.17 E-value=1.4e+02 Score=23.29 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 74 LELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 74 le~LreeneqL~~qlErEK~lrk~ae 99 (101)
...|..++++|..++|.||...+..|
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~E 161 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLE 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887665543
No 89
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=23.15 E-value=32 Score=19.72 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=13.7
Q ss_pred ccccccCCCCccccCHHHH
Q psy13296 6 ETVYGTHDDSHIVMSEKVQ 24 (101)
Q Consensus 6 e~~~~~~~~~~~~~se~Vy 24 (101)
+.+||++++......++|+
T Consensus 11 ~SlySDeeeE~~~~~ekvq 29 (30)
T PF03522_consen 11 ESLYSDEEEETETEPEKVQ 29 (30)
T ss_pred eccccCcccccccchhhcc
Confidence 4678987777777667764
No 90
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.12 E-value=2e+02 Score=18.00 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 62 LAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 62 ~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
....+.+..+.+++.++.+|++|..+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788888888888776443
No 91
>PRK14151 heat shock protein GrpE; Provisional
Probab=23.08 E-value=3.3e+02 Score=20.49 Aligned_cols=53 Identities=4% Similarity=-0.076 Sum_probs=32.1
Q ss_pred ChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 42 DEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL 94 (101)
Q Consensus 42 G~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~l 94 (101)
.|++...=-+-+...=+.++.+-.+..++...+.++++|.+-.+.+.+||+..
T Consensus 11 ~~~~~~~~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~ 63 (176)
T PRK14151 11 APEAAQAEAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEK 63 (176)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333344444444455555555666667777888888888888888753
No 92
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.00 E-value=2.1e+02 Score=18.20 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
++.+-++|++....++.+.+....|+.=||
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777777777777777777777666
No 93
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=22.87 E-value=5e+02 Score=24.25 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHH--HHHHHHHHhh--ChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 20 SEKVQSLAGSIY--QEFEKMITKY--DEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (101)
Q Consensus 20 se~Vy~lA~~Iy--~EfE~lI~~y--G~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lr 95 (101)
...|..|...+. .|+.+|-... ......++-+ +=.+.+.+..+.+++.....++..|+...+.+..++++=|+.+
T Consensus 73 ~~ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 73 QEEIQALQEELRAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555442 2444555541 1222333444 5667788889999999899999999999999999999888776
Q ss_pred Hhhh
Q psy13296 96 KAAD 99 (101)
Q Consensus 96 k~ae 99 (101)
..+.
T Consensus 152 ~~~~ 155 (775)
T PF10174_consen 152 DKAD 155 (775)
T ss_pred HHHH
Confidence 5543
No 94
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.71 E-value=1.4e+02 Score=19.50 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=21.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhCh
Q psy13296 17 IVMSEKVQSLAGSIYQEFEKMITKYDE 43 (101)
Q Consensus 17 ~~~se~Vy~lA~~Iy~EfE~lI~~yG~ 43 (101)
++-.+....||..||.+..++...-|-
T Consensus 4 ~~t~~~l~~ia~~iG~~Wk~Lar~LGl 30 (86)
T cd08318 4 PVTGEQITVFANKLGEDWKTLAPHLEM 30 (86)
T ss_pred CCCHHHHHHHHHHHhhhHHHHHHHcCC
Confidence 344566888999999999999888775
No 95
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=22.68 E-value=60 Score=26.05 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhChh
Q psy13296 29 SIYQEFEKMITKYDED 44 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d 44 (101)
++|+|+.+.+.+|||+
T Consensus 54 sVY~El~~fm~r~gc~ 69 (221)
T COG1458 54 SVYRELMGFMERNGCP 69 (221)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 5899999999999986
No 96
>PF15220 HILPDA: Hypoxia-inducible lipid droplet-associated
Probab=22.62 E-value=1.4e+02 Score=19.53 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=23.9
Q ss_pred HHHhhChhHHhhHHHHHHHHHHhHHHHHh
Q psy13296 37 MITKYDEDVVKDLMPLVVNVLESLDLAFT 65 (101)
Q Consensus 37 lI~~yG~d~V~~LmP~VV~vLE~Le~~~~ 65 (101)
|...|=-.+|-.|....|++.|.|+.+.-
T Consensus 4 ~lnlyllgvvltllsifvrlmesle~lle 32 (63)
T PF15220_consen 4 VLNLYLLGVVLTLLSIFVRLMESLEGLLE 32 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566677889999999999999998763
No 97
>PRK05926 hypothetical protein; Provisional
Probab=22.59 E-value=29 Score=28.75 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=31.2
Q ss_pred cccCCCCccccCHHHHHHHH-HHH-----HHHHHHHHhhChhHHh
Q psy13296 9 YGTHDDSHIVMSEKVQSLAG-SIY-----QEFEKMITKYDEDVVK 47 (101)
Q Consensus 9 ~~~~~~~~~~~se~Vy~lA~-~Iy-----~EfE~lI~~yG~d~V~ 47 (101)
||.+|=++..|.|.||..|+ .-+ .++.++|+.-|--.+.
T Consensus 320 ~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~ 364 (370)
T PRK05926 320 CGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCL 364 (370)
T ss_pred CCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCcee
Confidence 67788888999999999998 222 7889999988876554
No 98
>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains. The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....
Probab=22.56 E-value=2.1e+02 Score=18.08 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhC----hhHHhhHHHHHHHHHHhHHHHH
Q psy13296 23 VQSLAGSIYQEFEKMITKYD----EDVVKDLMPLVVNVLESLDLAF 64 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG----~d~V~~LmP~VV~vLE~Le~~~ 64 (101)
+..+...+.++|...+..|+ ..-...|.-.+.+.|.-||+.-
T Consensus 2 I~~i~~~v~~~l~~~v~~~~~~~~~~~~~~l~E~L~~~LlkLD~I~ 47 (76)
T PF02179_consen 2 IEKIIDEVEKELQPEVEQFDGKKDEKEYLRLSEMLMQLLLKLDSIE 47 (76)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhcCcc
Confidence 34566677777777777773 3345677778888899999883
No 99
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.50 E-value=72 Score=22.80 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhhChhHH
Q psy13296 17 IVMSEKVQSLAGSIYQEFEKMITKYDEDVV 46 (101)
Q Consensus 17 ~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V 46 (101)
..++++ ...|+..|+.+|+.|.|+.+
T Consensus 38 ~~~~~r----l~~I~~~l~~~i~~~~Pd~v 63 (154)
T cd00529 38 APLPSR----LKTIYDGLNEVIDQFQPDVV 63 (154)
T ss_pred CCHHHH----HHHHHHHHHHHHHHhCCCEE
Confidence 345555 45599999999999988854
No 100
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=22.38 E-value=69 Score=18.34 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=13.9
Q ss_pred HHHHHHhhChh---HHhhHHH
Q psy13296 34 FEKMITKYDED---VVKDLMP 51 (101)
Q Consensus 34 fE~lI~~yG~d---~V~~LmP 51 (101)
|...|..||.+ .+...||
T Consensus 12 l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 12 LLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHhCCcHHHHHHHHcC
Confidence 67788899977 6777776
No 101
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.32 E-value=3.6e+02 Score=20.56 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHhhChhHHhhHHHHHHHHHHhHHHHHh
Q psy13296 37 MITKYDEDVVKDLMPLVVNVLESLDLAFT 65 (101)
Q Consensus 37 lI~~yG~d~V~~LmP~VV~vLE~Le~~~~ 65 (101)
|..+||+.+-..-.=.+-..+..|+....
T Consensus 125 Ll~~~g~naW~~~n~~Le~~~~~le~~l~ 153 (221)
T PF05700_consen 125 LLSKYGENAWLIHNEQLEAMLKRLEKELA 153 (221)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999877666666666666664443
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.18 E-value=2.8e+02 Score=24.13 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=26.4
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRK 96 (101)
Q Consensus 59 ~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk 96 (101)
.|..+.++..+....+..++.+++.+..+|+.+.+.+.
T Consensus 186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q 223 (420)
T COG4942 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ 223 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555667788888899999888887766543
No 103
>KOG4571|consensus
Probab=22.09 E-value=2e+02 Score=24.02 Aligned_cols=30 Identities=40% Similarity=0.357 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q psy13296 68 QEHEVELELLREDNEQLVTQ---YEREKQLRKA 97 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~q---lErEK~lrk~ 97 (101)
+.+..+++.|...|++|..| +|||=+.=|+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888888777 6666554444
No 104
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=22.09 E-value=81 Score=24.03 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=44.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhhChh-------------------------HHhhHHHHHHHHHHhH----H-----
Q psy13296 16 HIVMSEKVQSLAGSIYQEFEKMITKYDED-------------------------VVKDLMPLVVNVLESL----D----- 61 (101)
Q Consensus 16 ~~~~se~Vy~lA~~Iy~EfE~lI~~yG~d-------------------------~V~~LmP~VV~vLE~L----e----- 61 (101)
....|+..+.+|+.+++||++---.-+.- ....|+-.++++|..- -
T Consensus 35 Av~~s~~ih~ls~e~~~eFe~~~~~~~~~~~~~~~~ChT~si~tP~~keeaqq~s~~~LL~~~l~Ll~sW~~PL~~L~~~ 114 (214)
T PF00103_consen 35 AVQLSHHIHNLSSEMFNEFEENYSPGKQQFNKRPNSCHTSSIPTPEDKEEAQQISDEDLLKLSLSLLQSWNEPLQHLVTE 114 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHCCTSTGGGGS---SSHHHHHHS-HHHHHHHHHHHHHCTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhccCCCeeecCCcCcCCchhhhhhccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34578889999999999999854332220 1245566666666521 1
Q ss_pred ---------HHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy13296 62 ---------LAFTENQEHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 62 ---------~~~~~~~~~~~ele~LreeneqL~~ql 88 (101)
...+...+.+..+..|.+-.+.+..+.
T Consensus 115 l~~~~~~~~~ilsk~~~i~~k~~~L~egi~~i~~~~ 150 (214)
T PF00103_consen 115 LSSLPEAPDAILSKAKEIEEKIKELLEGIKKILSKM 150 (214)
T ss_dssp HHCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCcHHHhchHHHHHHHHHHHHHHHHHHHHhh
Confidence 223344556666667776666666554
No 105
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.98 E-value=2.9e+02 Score=19.38 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 48 DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 48 ~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+|+-..-+-.+..+.+.........+...|...+++|.++
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555544
No 106
>PTZ00015 histone H4; Provisional
Probab=21.93 E-value=77 Score=22.34 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhChhHHhhHH
Q psy13296 26 LAGSIYQEFEKMITKYDEDVVKDLM 50 (101)
Q Consensus 26 lA~~Iy~EfE~lI~~yG~d~V~~Lm 50 (101)
+.+++|.|+..++..|..+.+...+
T Consensus 48 IS~d~y~e~r~vle~~l~~I~rdav 72 (102)
T PTZ00015 48 ISGDIYEEVRGVLKAFLENVVRDST 72 (102)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766655544
No 107
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=21.85 E-value=2.9e+02 Score=24.00 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhh----------hhHHHHHHHHHHH
Q psy13296 18 VMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ----------EHEVELELLREDN 81 (101)
Q Consensus 18 ~~se~Vy~lA~~I------y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~----------~~~~ele~Lreen 81 (101)
+++++=+.+|..+ |+|.+.||...|-+....-.-..|+.-..++.+.+++. ...+.+++--+..
T Consensus 350 i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l 429 (461)
T PRK12597 350 VVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSC 429 (461)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCHHHHHHHHhHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHH
Confidence 5677778888754 78999999999976688888888899999999888775 3344455444444
Q ss_pred HHHH
Q psy13296 82 EQLV 85 (101)
Q Consensus 82 eqL~ 85 (101)
.+++
T Consensus 430 ~~i~ 433 (461)
T PRK12597 430 ERIL 433 (461)
T ss_pred HHHh
Confidence 4443
No 108
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=21.82 E-value=2.2e+02 Score=22.62 Aligned_cols=40 Identities=33% Similarity=0.357 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 48 DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 48 ~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
.|.|.|=.-||.|-.+..+.+.++.+|+.-|..-.++++.
T Consensus 4 ~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e 43 (239)
T PF05276_consen 4 ELDPRVQEELEKLNQATDEINRLENELDEARATFRRLLSE 43 (239)
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988887776
No 109
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=21.79 E-value=61 Score=17.55 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.2
Q ss_pred CCccccCHHHHH
Q psy13296 14 DSHIVMSEKVQS 25 (101)
Q Consensus 14 ~~~~~~se~Vy~ 25 (101)
++--+||+++|+
T Consensus 5 dnmmPMSPddy~ 16 (23)
T PF12162_consen 5 DNMMPMSPDDYD 16 (23)
T ss_dssp TS---S-HHHHH
T ss_pred hcccCCCHHHHH
Confidence 567789999875
No 110
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=1.9e+02 Score=26.64 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 58 E~Le~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+.++.+-.+|+.++-++++++.+++.|..++++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~ 461 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELER 461 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 111
>PF10514 Bcl-2_BAD: Pro-apoptotic Bcl-2 protein, BAD; InterPro: IPR018868 BAD is a Bcl-2 homology domain 3 (BH3)-only pro-apoptotic member of the Bcl-2 protein family that is regulated by phosphorylation in response to survival factors []. Binding of BAD to mitochondria is thought to be exclusively mediated by its BH3 domain. Membrane localisation of BAD mediates membrane translocation of Bcl-XL. The C-terminal part of BAD is sufficient for membrane binding. There are two segments with differing lipid-binding preferences, LBD1 and LBD2, that are responsible for this binding: (i) LBD1 located in the proximity of the BH3 domain (amino acids 122-131) and (ii) LBD2, the putative C-terminal alpha-helix-5 []. Phosphorylation-regulated 14-3-3 protein binding may expose the cholesterol-preferring LBD1 and bury the LBD2, thereby mediating translocation of BAD to raft-like micro-domains []. ; PDB: 2BZW_B 1G5J_B.
Probab=21.38 E-value=58 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhChhHHhhHHHHHHH
Q psy13296 27 AGSIYQEFEKMITKYDEDVVKDLMPLVVN 55 (101)
Q Consensus 27 A~~Iy~EfE~lI~~yG~d~V~~LmP~VV~ 55 (101)
|..-|+||.||-|-|..-. +| ||.+-+
T Consensus 107 A~rYGreLRRMSDEF~~~f-kG-lprpkS 133 (167)
T PF10514_consen 107 AQRYGRELRRMSDEFDSSF-KG-LPRPKS 133 (167)
T ss_dssp HHHHHHHHHHHHHHHHCTS----------
T ss_pred HHHHhHHHHHhhHHHHhhh-cc-CCCCCC
Confidence 8889999999999999888 88 887654
No 112
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=21.31 E-value=1.2e+02 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHHHHHhhChhHHhhHHHHHHHHHH
Q psy13296 32 QEFEKMITKYDEDVVKDLMPLVVNVLE 58 (101)
Q Consensus 32 ~EfE~lI~~yG~d~V~~LmP~VV~vLE 58 (101)
+.+..||++||.|.|...|-.++..=|
T Consensus 196 ~rl~el~~~yG~d~v~~~~~~~~~~sE 222 (527)
T PF02538_consen 196 RRLLELIERYGADTVRAAMDEILDYSE 222 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999887766544
No 113
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=21.27 E-value=2.5e+02 Score=24.32 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=42.3
Q ss_pred ccccCHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhh
Q psy13296 16 HIVMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67 (101)
Q Consensus 16 ~~~~se~Vy~lA~~I------y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~ 67 (101)
+..++++-+.+|+.+ |+|+|.||...|.+....-.-..|+.-+.++.+.+++
T Consensus 343 ~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~~~~~i~~fL~Q~ 400 (449)
T TIGR03305 343 PGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQP 400 (449)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 455678888888864 7899999999998777777788888888888887765
No 114
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=21.25 E-value=3e+02 Score=19.19 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC--hhHHhhHHHHHHHHHHhHHHHHh----hhhhhHHHHHHHHHHHHHHHHH
Q psy13296 21 EKVQSLAGSIYQEFEKMITKYD--EDVVKDLMPLVVNVLESLDLAFT----ENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 21 e~Vy~lA~~Iy~EfE~lI~~yG--~d~V~~LmP~VV~vLE~Le~~~~----~~~~~~~ele~LreeneqL~~q 87 (101)
|++-|.|..|..-+.++... | +.+...|.+..=.|.+.++.+.. .+...-.++.....+.+++..+
T Consensus 89 ErigD~~~~ia~~~~~~~~~-~~~~~~~~el~~m~~~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~l~~~ 160 (212)
T TIGR02135 89 ERIGDYAVNIAKRALRLKEE-DAKPKHLEELEKMGKLALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQ 160 (212)
T ss_pred HHHHHHHHHHHHHHHHhccc-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776666666542 3 35555666665556655554332 2222223444555554444443
No 115
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=21.14 E-value=67 Score=23.86 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=14.8
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 53 VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+.+-..|-.+..+.+....++..|..||+-|+.++.
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~ 46 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELA 46 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888889999999999999988754
No 116
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.10 E-value=2e+02 Score=22.86 Aligned_cols=41 Identities=27% Similarity=0.273 Sum_probs=21.2
Q ss_pred hHHhhHHHHHHH--------HHHh---HHHHHhhhhhhHHHHHHHHHHHHHH
Q psy13296 44 DVVKDLMPLVVN--------VLES---LDLAFTENQEHEVELELLREDNEQL 84 (101)
Q Consensus 44 d~V~~LmP~VV~--------vLE~---Le~~~~~~~~~~~ele~LreeneqL 84 (101)
..-.+|+|.|-+ ..|+ |.........+..|++.||.||-.|
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789998864 2221 2222333444455555555555555
No 117
>KOG4001|consensus
Probab=21.09 E-value=1.7e+02 Score=23.79 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 67 NQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 67 ~~~~~~ele~LreeneqL~~qlEr 90 (101)
...++.+.+-|++-|.||..|||-
T Consensus 230 Ekk~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 230 EKKMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667788899999999888873
No 118
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.02 E-value=4e+02 Score=20.57 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 63 AFTENQEHEVELELLREDNEQLVTQYEREK 92 (101)
Q Consensus 63 ~~~~~~~~~~ele~LreeneqL~~qlErEK 92 (101)
+-.+|+++..++..++.+++.|..++.+.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666555444
No 119
>KOG0288|consensus
Probab=21.01 E-value=2.3e+02 Score=25.04 Aligned_cols=30 Identities=37% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 61 e~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
++..+.-+..+.+|.+|++||.||..+.=+
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777888888888887766433
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.96 E-value=4.9e+02 Score=22.57 Aligned_cols=48 Identities=27% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 51 PLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 51 P~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
-.+-.++..|..+- -...+..+..+.+..++|-..+++|...++.++.
T Consensus 263 ~~i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 263 EQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443 3345677888999999999999999999987753
No 121
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=20.80 E-value=61 Score=23.27 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=18.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhhChhHH
Q psy13296 16 HIVMSEKVQSLAGSIYQEFEKMITKYDEDVV 46 (101)
Q Consensus 16 ~~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~V 46 (101)
...+++|.. .||+.+.++|+.|.|+.+
T Consensus 36 ~~~~~~Rl~----~I~~~l~~li~~~~P~~v 62 (149)
T PF02075_consen 36 KDSLPERLK----EIYEELEELIEEYNPDEV 62 (149)
T ss_dssp S--HHHHHH----HHHHHHHHHHHHH--SEE
T ss_pred CCCHHHHHH----HHHHHHHHHHHhhCCCEE
Confidence 345666665 688999999999999865
No 122
>PF15058 Speriolin_N: Speriolin N terminus
Probab=20.78 E-value=1.5e+02 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.0
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHH
Q psy13296 57 LESLDLAFTENQEHEVELELLRED 80 (101)
Q Consensus 57 LE~Le~~~~~~~~~~~ele~Lree 80 (101)
.+.++.++.+|.+++..++++|+.
T Consensus 11 rhqierLv~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 11 RHQIERLVRENEELKKLVRLIREN 34 (200)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 567788889999999999888874
No 123
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=20.73 E-value=55 Score=20.23 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13296 75 ELLREDNEQLVTQYEREK 92 (101)
Q Consensus 75 e~LreeneqL~~qlErEK 92 (101)
+.++.++++|..++.+++
T Consensus 2 ~~~~~~veqLr~el~~~R 19 (57)
T cd00068 2 DQLKKEVEQLRKELSRER 19 (57)
T ss_pred HHHHHHHHHHHHHHCCch
Confidence 457788888888877764
No 124
>KOG4378|consensus
Probab=20.57 E-value=1.1e+02 Score=28.02 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q psy13296 65 TENQEHEVELELLREDNEQLVT 86 (101)
Q Consensus 65 ~~~~~~~~ele~LreeneqL~~ 86 (101)
.+|+-+..||+.||++|+.|+.
T Consensus 650 ~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhhhc
Confidence 4677777888888888888753
No 125
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.31 E-value=6.4e+02 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHhhChhHHhhHHHHHHH
Q psy13296 35 EKMITKYDEDVVKDLMPLVVN 55 (101)
Q Consensus 35 E~lI~~yG~d~V~~LmP~VV~ 55 (101)
|.+|..|...-+..|+-..-.
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~ 431 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQH 431 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578889988888888765543
No 126
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.00 E-value=85 Score=22.72 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=12.9
Q ss_pred hhHHhhHHHHHHHHHH
Q psy13296 43 EDVVKDLMPLVVNVLE 58 (101)
Q Consensus 43 ~d~V~~LmP~VV~vLE 58 (101)
++--..|||.|+|+|=
T Consensus 83 ~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 83 EEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4556789999999984
Done!