Query psy13296
Match_columns 101
No_of_seqs 84 out of 86
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 15:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swk_A Vimentin; cytoskeleton, 86.3 2.2 7.6E-05 27.8 5.9 42 59-100 8-49 (86)
2 2eqb_B RAB guanine nucleotide 85.8 2.2 7.7E-05 29.0 5.9 41 60-100 7-47 (97)
3 2w6b_A RHO guanine nucleotide 82.8 1.9 6.6E-05 26.9 4.1 32 69-100 14-45 (56)
4 3ol1_A Vimentin; structural ge 82.4 3.7 0.00013 27.9 5.9 40 60-99 29-68 (119)
5 3w03_C DNA repair protein XRCC 74.2 7.5 0.00026 28.9 5.8 20 20-39 69-88 (184)
6 2o3l_A Hypothetical protein; s 72.8 6.1 0.00021 26.0 4.5 40 29-68 19-58 (85)
7 2yy0_A C-MYC-binding protein; 72.4 5.8 0.0002 23.8 4.0 30 60-89 21-50 (53)
8 2ocy_A RAB guanine nucleotide 71.9 8.7 0.0003 27.9 5.6 35 66-100 45-79 (154)
9 1nkp_B MAX protein, MYC proto- 66.9 19 0.00066 22.4 5.8 35 55-89 44-78 (83)
10 2o4t_A BH3976 protein; LEFT-ha 65.9 9.4 0.00032 25.8 4.4 39 29-67 16-54 (100)
11 1nkp_A C-MYC, MYC proto-oncoge 64.9 25 0.00085 22.6 8.2 35 55-89 49-83 (88)
12 2e7s_A RAB guanine nucleotide 64.5 5 0.00017 28.7 2.9 33 68-100 35-67 (135)
13 1t2k_D Cyclic-AMP-dependent tr 64.2 12 0.00041 22.4 4.2 27 61-87 32-58 (61)
14 3s9g_A Protein hexim1; cyclin 63.8 8.1 0.00028 26.7 3.8 26 64-89 64-89 (104)
15 1nlw_A MAD protein, MAX dimeri 62.7 27 0.00091 22.2 6.1 35 55-89 44-78 (80)
16 3w03_C DNA repair protein XRCC 62.5 13 0.00044 27.6 5.0 29 59-87 146-174 (184)
17 3obv_E Protein diaphanous homo 61.3 64 0.0022 26.1 9.8 47 23-69 335-385 (457)
18 3m91_A Proteasome-associated A 60.9 19 0.00066 21.6 4.7 32 59-90 17-48 (51)
19 1uii_A Geminin; human, DNA rep 57.3 36 0.0012 22.5 6.0 36 60-95 41-76 (83)
20 2hh6_A BH3980 protein; 1017660 55.6 14 0.00047 25.6 3.8 40 29-68 34-74 (113)
21 1a93_B MAX protein, coiled coi 55.5 21 0.00072 20.1 3.9 24 65-88 7-30 (34)
22 4etp_A Kinesin-like protein KA 54.7 28 0.00096 27.8 6.1 41 58-98 10-50 (403)
23 3l4f_A RHO guanine nucleotide 53.5 21 0.00073 22.4 4.1 31 70-100 12-42 (61)
24 1a93_A Coiled coil, LZ, MYC pr 51.9 27 0.00091 19.6 4.0 28 63-90 5-32 (34)
25 2j1d_G DAAM1, disheveled-assoc 50.7 98 0.0034 25.0 10.1 47 23-69 347-397 (483)
26 2l5g_A GPS2 protein, G protein 45.0 33 0.0011 19.8 3.7 27 61-87 11-37 (38)
27 2dfs_A Myosin-5A; myosin-V, in 43.5 81 0.0028 28.5 7.8 47 48-94 960-1006(1080)
28 2xdj_A Uncharacterized protein 42.5 66 0.0023 20.7 5.7 26 64-89 26-51 (83)
29 1jnm_A Proto-oncogene C-JUN; B 41.0 16 0.00055 21.9 2.1 24 63-86 34-57 (62)
30 1go4_E MAD1 (mitotic arrest de 41.0 56 0.0019 22.1 5.0 31 59-89 13-43 (100)
31 1dh3_A Transcription factor CR 40.4 38 0.0013 20.1 3.7 23 68-90 25-47 (55)
32 1am9_A Srebp-1A, protein (ster 40.1 37 0.0013 21.3 3.8 50 45-94 27-79 (82)
33 2dgc_A Protein (GCN4); basic d 38.4 45 0.0016 20.3 3.9 24 67-90 32-55 (63)
34 3q4f_C DNA repair protein XRCC 38.3 44 0.0015 25.1 4.5 31 57-87 153-183 (186)
35 2wt7_A Proto-oncogene protein 37.8 56 0.0019 19.5 4.2 23 64-86 36-58 (63)
36 1v9d_A Diaphanous protein homo 36.8 1.4E+02 0.0048 22.8 9.6 45 25-69 266-314 (340)
37 1z67_A Hypothetical protein S4 34.8 53 0.0018 23.1 4.3 41 15-57 60-107 (135)
38 3m9b_A Proteasome-associated A 34.6 47 0.0016 25.8 4.3 38 55-92 58-95 (251)
39 1l9l_A Granulysin; saposin fol 33.5 32 0.0011 21.3 2.7 22 29-50 40-61 (74)
40 3tfg_A ALR2278 protein; heme-b 33.4 40 0.0014 23.8 3.5 38 19-56 48-89 (189)
41 2wuj_A Septum site-determining 33.3 41 0.0014 20.0 3.0 44 32-78 11-54 (57)
42 1wlq_A Geminin; coiled-coil; 2 33.1 1E+02 0.0036 20.2 5.4 25 61-85 34-65 (83)
43 1hlo_A Protein (transcription 33.0 46 0.0016 20.6 3.3 42 44-85 32-77 (80)
44 1t6f_A Geminin; coiled-coil, c 32.5 72 0.0025 18.2 5.0 25 61-85 10-34 (37)
45 3u06_A Protein claret segregat 31.9 1E+02 0.0036 24.7 6.1 40 58-97 10-49 (412)
46 1hjb_A Ccaat/enhancer binding 31.7 84 0.0029 20.5 4.6 22 68-89 39-60 (87)
47 2qsr_A Transcription-repair co 31.4 21 0.00071 25.4 1.7 16 35-50 51-68 (173)
48 2j5u_A MREC protein; bacterial 31.0 58 0.002 24.3 4.2 30 56-85 17-46 (255)
49 2wvr_A Geminin; DNA replicatio 30.6 1.3E+02 0.0043 23.0 6.0 30 60-89 110-139 (209)
50 3rfi_A Asp; PSI, saposin, hydr 30.6 25 0.00086 23.0 1.9 24 27-50 4-27 (108)
51 3o0z_A RHO-associated protein 30.5 1.6E+02 0.0054 21.5 7.5 50 51-100 40-90 (168)
52 1hjb_A Ccaat/enhancer binding 29.7 87 0.003 20.4 4.4 28 61-88 46-73 (87)
53 2g9p_A Antimicrobial peptide l 29.6 41 0.0014 17.7 2.2 17 34-50 3-19 (26)
54 2bni_A General control protein 29.6 55 0.0019 18.4 2.9 19 61-79 11-29 (34)
55 2j69_A Bacterial dynamin-like 28.0 2.4E+02 0.0081 23.7 7.8 60 24-83 610-669 (695)
56 3c3f_A Alpha/beta peptide with 27.8 62 0.0021 18.2 2.9 19 61-79 11-29 (34)
57 1t3u_A Conserved hypothetical 27.2 1.2E+02 0.0042 19.2 9.0 68 20-89 25-92 (104)
58 3k6g_A Telomeric repeat-bindin 27.0 29 0.001 24.1 1.8 17 33-49 76-92 (111)
59 3o0z_A RHO-associated protein 26.2 1.9E+02 0.0065 21.1 7.5 55 35-93 81-135 (168)
60 2bzw_B BCL2-antagonist of cell 26.1 60 0.002 17.4 2.5 18 26-43 7-24 (27)
61 1ci6_A Transcription factor AT 25.1 1.2E+02 0.004 18.2 5.8 24 62-85 34-57 (63)
62 3u7r_A NADPH-dependent FMN red 24.7 92 0.0032 22.0 4.1 31 15-45 155-185 (190)
63 3fkm_X Signaling protein; brom 24.1 1.5E+02 0.0052 20.5 5.1 37 22-58 104-140 (166)
64 1x79_B RAB GTPase binding effe 23.6 31 0.0011 23.8 1.4 19 70-88 89-107 (112)
65 2ve7_A Kinetochore protein HEC 23.6 1.1E+02 0.0037 23.6 4.6 14 23-36 147-160 (315)
66 3fhn_A Protein transport prote 23.5 2.2E+02 0.0075 24.9 7.0 43 25-77 52-100 (706)
67 3rrk_A V-type ATPase 116 kDa s 22.4 1.2E+02 0.0041 22.8 4.6 30 58-87 99-128 (357)
68 1uix_A RHO-associated kinase; 22.2 1.6E+02 0.0054 18.7 5.9 16 83-98 43-58 (71)
69 2hy6_A General control protein 21.7 88 0.003 17.6 2.8 18 62-79 12-29 (34)
70 1gu4_A CAAT/enhancer binding p 21.6 1.6E+02 0.0056 18.6 4.6 22 68-89 39-60 (78)
71 3f1i_H Hepatocyte growth facto 21.4 2E+02 0.0067 19.5 7.6 52 46-99 43-97 (98)
72 2f6m_B Vacuolar protein sortin 21.1 1.2E+02 0.004 20.7 3.9 35 52-89 36-70 (109)
73 1ik9_A DNA repair protein XRCC 21.0 2.5E+02 0.0087 20.6 7.8 25 65-89 139-163 (213)
74 1fx0_B ATP synthase beta chain 20.9 1.2E+02 0.0042 25.3 4.7 50 18-67 379-434 (498)
75 2zxx_A Geminin; coiled-coil, c 20.8 1.8E+02 0.0061 18.8 4.9 22 60-81 29-50 (79)
76 3twe_A Alpha4H; unknown functi 20.6 80 0.0027 16.7 2.3 10 28-37 4-13 (27)
No 1
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.26 E-value=2.2 Score=27.75 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=37.1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 59 ~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
.++.+..++.....++.-++...+.+...||.|-..|..+|.
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~ 49 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAEN 49 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888889999999999999999999999999998873
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.85 E-value=2.2 Score=29.04 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
|+.+-.+...++.++.....+..+|..+|.+|+..|..||.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~ 47 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677788888899999999999999999999874
No 3
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=82.83 E-value=1.9 Score=26.92 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 69 EHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 69 ~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
.+.-++..|+.||.++..-+|.|.+.||.-|.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999999999999999999997664
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.42 E-value=3.7 Score=27.91 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=33.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
++.+..++..+..++.-++...+.+...||.|-..|..+|
T Consensus 29 id~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 29 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566667778888889999999999999999988887776
No 5
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=74.22 E-value=7.5 Score=28.92 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy13296 20 SEKVQSLAGSIYQEFEKMIT 39 (101)
Q Consensus 20 se~Vy~lA~~Iy~EfE~lI~ 39 (101)
.++|..+|..++.++++-++
T Consensus 69 e~~I~~~A~~~~m~~e~Yv~ 88 (184)
T 3w03_C 69 ESEISQEADDMAMEKGKYVG 88 (184)
T ss_dssp HHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 35688888888888877665
No 6
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=72.79 E-value=6.1 Score=25.95 Aligned_cols=40 Identities=5% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhh
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ 68 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~ 68 (101)
..|+++++-|-.||+-.-..+||++-.+|++++..+....
T Consensus 19 ~ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaaa~G~ 58 (85)
T 2o3l_A 19 FVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGR 58 (85)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999998888754
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.39 E-value=5.8 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.|.+..+|.++..+++.|++.++.|..+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777777777766554
No 8
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.92 E-value=8.7 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 66 ~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
+...+..++.....+..+|..+|.+|+..|..||.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~ 79 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 79 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777888999999999999999999874
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.91 E-value=19 Score=22.41 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 55 ~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+.+-+..+..+++.+..+++.|+.+|++|..++.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666778888899999999999988774
No 10
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=65.91 E-value=9.4 Score=25.83 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhh
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~ 67 (101)
..|+++++-|-.||+-.-..+||+.-.+|++++..+...
T Consensus 16 ~ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaaa~G 54 (100)
T 2o4t_A 16 IVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAG 54 (100)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999887754
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.85 E-value=25 Score=22.59 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 55 ~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+.+-+..+..+++.+..+.+.|+.+|++|..+++
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777888888889999999999988875
No 12
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.45 E-value=5 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
.++...+.....+..+|..++.+|+..|..||.
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~ 67 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEE 67 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555777788888888899988888874
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.16 E-value=12 Score=22.37 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 61 e~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+.+.+.|..+..++..|+.++.+|...
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777777777777777654
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=63.76 E-value=8.1 Score=26.72 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=21.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 64 FTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 64 ~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.++.+++..+++.|+.+|++|+.+-+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999987644
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.68 E-value=27 Score=22.16 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 55 ~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+.+-.-.+..+++.+..+.+.|+.++++|..+++
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666778888888999999998888775
No 16
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.50 E-value=13 Score=27.62 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=13.9
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 59 SLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 59 ~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+++-+...+.++..+...|+.+|++|..+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555443
No 17
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=61.31 E-value=64 Score=26.15 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHH----hhHHHHHHHHHHhHHHHHhhhhh
Q psy13296 23 VQSLAGSIYQEFEKMITKYDEDVV----KDLMPLVVNVLESLDLAFTENQE 69 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~d~V----~~LmP~VV~vLE~Le~~~~~~~~ 69 (101)
+..+...+...|..++.-||+|+- ..+.+.+.+-+.....+..+|+.
T Consensus 335 L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~~ 385 (457)
T 3obv_E 335 LRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 385 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666778889999998864 47788888888888888888864
No 18
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.90 E-value=19 Score=21.57 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=24.2
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 59 SLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 59 ~Le~~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
.++.+..+|.++-..|...|.+...|..++++
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888777765
No 19
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=57.30 E-value=36 Score=22.49 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lr 95 (101)
|+....+|..+...++.|++++..|....+.=|.+-
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777778888887777766665544443
No 20
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=55.57 E-value=14 Score=25.56 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhC-hhHHhhHHHHHHHHHHhHHHHHhhhh
Q psy13296 29 SIYQEFEKMITKYD-EDVVKDLMPLVVNVLESLDLAFTENQ 68 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG-~d~V~~LmP~VV~vLE~Le~~~~~~~ 68 (101)
..|+++++-|-.|| +-.-..++|++-.+|++++..++...
T Consensus 34 ~ay~~i~~Yl~~~~~~~~g~~~~~il~~lldLfEeaaa~G~ 74 (113)
T 2hh6_A 34 HAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAEGK 74 (113)
T ss_dssp HHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHHHHHHcCC
Confidence 56899999999998 88888899999999999998887643
No 21
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.47 E-value=21 Score=20.10 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=20.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q psy13296 65 TENQEHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 65 ~~~~~~~~ele~LreeneqL~~ql 88 (101)
..|+.+..+++.|+..|..|..|.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 467888999999999999998775
No 22
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.72 E-value=28 Score=27.83 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=33.1
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13296 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAA 98 (101)
Q Consensus 58 E~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~a 98 (101)
+.++.+-.+..+++.+++.++.+++++..+|..|.++||.-
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777788889999999999999999999888863
No 23
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=53.51 E-value=21 Score=22.43 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 70 HEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 70 ~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
+.-++..|+.++.++..-+|.|-+.||..|.
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999987764
No 24
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=51.90 E-value=27 Score=19.60 Aligned_cols=28 Identities=36% Similarity=0.397 Sum_probs=21.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 63 AFTENQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 63 ~~~~~~~~~~ele~LreeneqL~~qlEr 90 (101)
+.++.+.+-.+-+.|+..++||...+++
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777888899999999877764
No 25
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=50.67 E-value=98 Score=25.01 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHH----hhHHHHHHHHHHhHHHHHhhhhh
Q psy13296 23 VQSLAGSIYQEFEKMITKYDEDVV----KDLMPLVVNVLESLDLAFTENQE 69 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~lI~~yG~d~V----~~LmP~VV~vLE~Le~~~~~~~~ 69 (101)
+......+...|..++.-||++.- ..+...+...+..+..+..+|.+
T Consensus 347 L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~ 397 (483)
T 2j1d_G 347 VEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENEN 397 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778889999999999863 45666677777777777766654
No 26
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.05 E-value=33 Score=19.76 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 61 e~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+..--+-..++.+++.|++++-||.-|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334455667778888887777665
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.51 E-value=81 Score=28.48 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 48 DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL 94 (101)
Q Consensus 48 ~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~l 94 (101)
.-++.+-.-++.|+....+++..+.++..|.++.+.|..++++..+-
T Consensus 960 ~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444466666666666555666666666666666665554333
No 28
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.53 E-value=66 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=13.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 64 FTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 64 ~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
..+.+.+..++..||..+|++.-+++
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444555566666665555544443
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.97 E-value=16 Score=21.90 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=11.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHH
Q psy13296 63 AFTENQEHEVELELLREDNEQLVT 86 (101)
Q Consensus 63 ~~~~~~~~~~ele~LreeneqL~~ 86 (101)
+.++|..+..++..|+.++.+|..
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554433
No 30
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.95 E-value=56 Score=22.05 Aligned_cols=31 Identities=29% Similarity=0.203 Sum_probs=15.3
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 59 SLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 59 ~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.++++..+...++.|-..|+++++.|-.++|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555544444
No 31
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.40 E-value=38 Score=20.09 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 68 QEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlEr 90 (101)
.+++..+..|..+|..|..++..
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888877654
No 32
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=40.13 E-value=37 Score=21.34 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHhhHHHHH---HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 45 VVKDLMPLV---VNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL 94 (101)
Q Consensus 45 ~V~~LmP~V---V~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~l 94 (101)
.+..|+|.. .+-...|..++.--..+..++..|++++++|..+++.=+.+
T Consensus 27 ~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 27 ELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455532 23344555555555667777788888888887776654443
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.41 E-value=45 Score=20.25 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q psy13296 67 NQEHEVELELLREDNEQLVTQYER 90 (101)
Q Consensus 67 ~~~~~~ele~LreeneqL~~qlEr 90 (101)
..+++.+++.|+.+|..|..+++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888887776654
No 34
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=38.33 E-value=44 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 57 LESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 57 LE~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
=|++.-+..+-.+++.+-+.|+++|++|..+
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666667777888889999998765
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.84 E-value=56 Score=19.53 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=11.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHH
Q psy13296 64 FTENQEHEVELELLREDNEQLVT 86 (101)
Q Consensus 64 ~~~~~~~~~ele~LreeneqL~~ 86 (101)
-.+|..+..++..|+.+..+|..
T Consensus 36 ~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 36 EDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444443
No 36
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=36.78 E-value=1.4e+02 Score=22.78 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhChhHH----hhHHHHHHHHHHhHHHHHhhhhh
Q psy13296 25 SLAGSIYQEFEKMITKYDEDVV----KDLMPLVVNVLESLDLAFTENQE 69 (101)
Q Consensus 25 ~lA~~Iy~EfE~lI~~yG~d~V----~~LmP~VV~vLE~Le~~~~~~~~ 69 (101)
.+...+.+-|..+..-||+|+- ..+...+.+-+..+..++.+|+.
T Consensus 266 ~~~~~~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~ 314 (340)
T 1v9d_A 266 MMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 314 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888899998853 45666777777777777777764
No 37
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=34.84 E-value=53 Score=23.13 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=33.1
Q ss_pred CccccCHHHHHHHHHHHHH-HHHHHHhhChhH------HhhHHHHHHHHH
Q psy13296 15 SHIVMSEKVQSLAGSIYQE-FEKMITKYDEDV------VKDLMPLVVNVL 57 (101)
Q Consensus 15 ~~~~~se~Vy~lA~~Iy~E-fE~lI~~yG~d~------V~~LmP~VV~vL 57 (101)
.+.++| -.+|++.+|.+ ++++..+.|-+. +..++|.+|.-|
T Consensus 60 ~N~pIs--~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~LP~~VD~l 107 (135)
T 1z67_A 60 RNQSVS--GEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIIDAL 107 (135)
T ss_dssp CCCCCC--HHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC--HHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhcc
Confidence 667888 56889999987 999999999654 668899998754
No 38
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.64 E-value=47 Score=25.78 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=28.0
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREK 92 (101)
Q Consensus 55 ~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK 92 (101)
..-..++.+..+|+.+..++..++.+..+|..++++=+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777787788888888888888888877633
No 39
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=33.48 E-value=32 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhChhHHhhHH
Q psy13296 29 SIYQEFEKMITKYDEDVVKDLM 50 (101)
Q Consensus 29 ~Iy~EfE~lI~~yG~d~V~~Lm 50 (101)
.+..+...++++||+.-+..|+
T Consensus 40 ~~~~~C~~~V~~y~~~Ii~~L~ 61 (74)
T 1l9l_A 40 RWRDVCRNFMRRYQSRVIQGLV 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999988887765
No 40
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=33.40 E-value=40 Score=23.83 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=30.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhhChhHHhhH----HHHHHHH
Q psy13296 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDL----MPLVVNV 56 (101)
Q Consensus 19 ~se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~L----mP~VV~v 56 (101)
+-.-|..+|...|...+.+...||...+..+ -|.++++
T Consensus 48 ~~~lv~~~s~~~g~~~~~ll~~fG~~~~~~~~~~~y~~~l~~ 89 (189)
T 3tfg_A 48 TYHLVGAASEVLGKPAEEWWIAFGEYWVTYTSEEGYGELLAS 89 (189)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhhhhhcHHHHHh
Confidence 3345777888889999999999999988655 5777774
No 41
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.27 E-value=41 Score=19.98 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=26.1
Q ss_pred HHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHH
Q psy13296 32 QEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLR 78 (101)
Q Consensus 32 ~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lr 78 (101)
++|.+-.+.|.++-|...+-.|+.-++.| ..+|.++..++..|+
T Consensus 11 k~F~~~~rGY~~~EVD~FLd~v~~~~~~l---~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 11 KTFTKSFRGYDEDEVNEFLAQVRKDYEIV---LRKKTELEAKVNELD 54 (57)
T ss_dssp CCCCEETTEEEHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC--
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34545556788888888887776655543 445555555554444
No 42
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.14 E-value=1e+02 Score=20.25 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=12.0
Q ss_pred HHHHhhhhhhHHHHH-------HHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELE-------LLREDNEQLV 85 (101)
Q Consensus 61 e~~~~~~~~~~~ele-------~LreeneqL~ 85 (101)
+....+|..+...++ .|+++|++|.
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554544444 4555555543
No 43
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.97 E-value=46 Score=20.58 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=23.9
Q ss_pred hHHhhHHHHH----HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13296 44 DVVKDLMPLV----VNVLESLDLAFTENQEHEVELELLREDNEQLV 85 (101)
Q Consensus 44 d~V~~LmP~V----V~vLE~Le~~~~~~~~~~~ele~LreeneqL~ 85 (101)
+.+..++|.. .+=.+.|..++.--..+..++..|+.++++|.
T Consensus 32 ~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 32 HSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667754 23445555555555555566666666655554
No 44
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.47 E-value=72 Score=18.20 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLREDNEQLV 85 (101)
Q Consensus 61 e~~~~~~~~~~~ele~LreeneqL~ 85 (101)
+.+...-..-..++..||++|++|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444445556677777777763
No 45
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.87 E-value=1e+02 Score=24.69 Aligned_cols=40 Identities=15% Similarity=-0.069 Sum_probs=27.6
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13296 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKA 97 (101)
Q Consensus 58 E~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ 97 (101)
+.|+.+..+.+++..+.+.++++++.+..||-.+-..||.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~ 49 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777777777777777777766666665
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.69 E-value=84 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy13296 68 QEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlE 89 (101)
.+....+..|..+|.+|..+++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655533
No 47
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=31.39 E-value=21 Score=25.43 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=11.6
Q ss_pred HHHHHhhCh--hHHhhHH
Q psy13296 35 EKMITKYDE--DVVKDLM 50 (101)
Q Consensus 35 E~lI~~yG~--d~V~~Lm 50 (101)
+.|||+||+ +.|.+|+
T Consensus 51 ~EL~DRFG~lP~~v~~Ll 68 (173)
T 2qsr_A 51 EELIDRFGEYPDVVAYLL 68 (173)
T ss_dssp HHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHCCCCcHHHHHHH
Confidence 568999995 5566555
No 48
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.03 E-value=58 Score=24.34 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy13296 56 VLESLDLAFTENQEHEVELELLREDNEQLV 85 (101)
Q Consensus 56 vLE~Le~~~~~~~~~~~ele~LreeneqL~ 85 (101)
-+..+..+..+|+++..++..|+..+.++.
T Consensus 17 ~~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~ 46 (255)
T 2j5u_A 17 GVVDLKNTYTENQHLKERLEELAQLESEVA 46 (255)
T ss_dssp ---------CTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677777777777776655443
No 49
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.65 E-value=1.3e+02 Score=22.98 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=15.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
|+....+|..+..+++.|++++..|..+.+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666655555555544443
No 50
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=30.62 E-value=25 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhChhHHhhHH
Q psy13296 27 AGSIYQEFEKMITKYDEDVVKDLM 50 (101)
Q Consensus 27 A~~Iy~EfE~lI~~yG~d~V~~Lm 50 (101)
.+.+-++...++++||+..+.-|+
T Consensus 4 ~g~~~~~C~~~V~~Y~~~ii~~l~ 27 (108)
T 3rfi_A 4 MAIVSMECKTIVSQYGEMIWDLLV 27 (108)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999988777554
No 51
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=30.51 E-value=1.6e+02 Score=21.51 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHHhHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13296 51 PLVVNVLESLD-LAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (101)
Q Consensus 51 P~VV~vLE~Le-~~~~~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae~ 100 (101)
.+.+..+|..- .+...+..+...-..|..++-+|.++++.||.-|.++.+
T Consensus 40 ~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 40 SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444322 223344556666777888888999999999998888764
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.71 E-value=87 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=20.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLREDNEQLVTQY 88 (101)
Q Consensus 61 e~~~~~~~~~~~ele~LreeneqL~~ql 88 (101)
+.+-.+|..+..+++.|+.++..|..-+
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888776543
No 53
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.64 E-value=41 Score=17.73 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=13.2
Q ss_pred HHHHHHhhChhHHhhHH
Q psy13296 34 FEKMITKYDEDVVKDLM 50 (101)
Q Consensus 34 fE~lI~~yG~d~V~~Lm 50 (101)
|-++|.+||..+++--+
T Consensus 3 fgklikkfgrkaisyav 19 (26)
T 2g9p_A 3 FGKLIKKFGRKAISYAV 19 (26)
T ss_dssp HHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 66899999998876543
No 54
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.64 E-value=55 Score=18.41 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=9.4
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLRE 79 (101)
Q Consensus 61 e~~~~~~~~~~~ele~Lre 79 (101)
+.+..++.++..++..||+
T Consensus 11 EeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 11 EEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHH
Confidence 3444455555555555543
No 55
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=27.98 E-value=2.4e+02 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy13296 24 QSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQ 83 (101)
Q Consensus 24 y~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~Lreeneq 83 (101)
|+.-..|++-.+.+++.|-.+.-.+|=-.+-.+=..|+++..+.+..+..++...+.++.
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 610 HEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 455567777777888888777777777777777777777776654444444444444433
No 56
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.79 E-value=62 Score=18.19 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=9.4
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q psy13296 61 DLAFTENQEHEVELELLRE 79 (101)
Q Consensus 61 e~~~~~~~~~~~ele~Lre 79 (101)
+.+..++.+++.++..||+
T Consensus 11 EeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 11 EXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 3444455555555555543
No 57
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=27.15 E-value=1.2e+02 Score=19.19 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 20 SEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 20 se~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+.+...|.-|-..+..+-+.||.=.... -.|.-+|-+-+.+....++.......+.+...+|...++
T Consensus 25 ee~l~~aA~~vd~~~~~i~~~~~~~~~~r--~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le 92 (104)
T 1t3u_A 25 RANLESAARYLDGKMREIRSSGKVIGADR--VAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVD 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999987543333 346677777776666555444456666666666666554
No 58
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=26.96 E-value=29 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.1
Q ss_pred HHHHHHHhhChhHHhhH
Q psy13296 33 EFEKMITKYDEDVVKDL 49 (101)
Q Consensus 33 EfE~lI~~yG~d~V~~L 49 (101)
.-++||++||++.|..=
T Consensus 76 ~R~qL~~KfG~enVAkR 92 (111)
T 3k6g_A 76 TREALVKKFGAQNVARR 92 (111)
T ss_dssp HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 46899999999998753
No 59
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.22 E-value=1.9e+02 Score=21.06 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13296 35 EKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQ 93 (101)
Q Consensus 35 E~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlErEK~ 93 (101)
||=-...|.+-+..|.-.|-.+-+-|+.+..+......+-..|.+. ++.+|+||.
T Consensus 81 Er~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek----l~~lEKe~a 135 (168)
T 3o0z_A 81 ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM----LNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3445677888888888888888888888777666666666666655 455566554
No 60
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=26.13 E-value=60 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhCh
Q psy13296 26 LAGSIYQEFEKMITKYDE 43 (101)
Q Consensus 26 lA~~Iy~EfE~lI~~yG~ 43 (101)
.|..-|+|+.||-|-|..
T Consensus 7 ~A~rYGReLRRMSDEF~~ 24 (27)
T 2bzw_B 7 AAQRYGRELRRMSDEFEG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhHHHHh
Confidence 578889999999998864
No 61
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.10 E-value=1.2e+02 Score=18.21 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=11.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHH
Q psy13296 62 LAFTENQEHEVELELLREDNEQLV 85 (101)
Q Consensus 62 ~~~~~~~~~~~ele~LreeneqL~ 85 (101)
.+-.+|.++..++..|+.++..|.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555544443
No 62
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=24.67 E-value=92 Score=21.96 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.1
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHhhChhH
Q psy13296 15 SHIVMSEKVQSLAGSIYQEFEKMITKYDEDV 45 (101)
Q Consensus 15 ~~~~~se~Vy~lA~~Iy~EfE~lI~~yG~d~ 45 (101)
+....++.+.+-....-.+|-..|++||++-
T Consensus 155 ~G~l~de~~~~~l~~~~~~~~~~i~~~~~e~ 185 (190)
T 3u7r_A 155 DGSVTDEKTAKFLQGFVDAFVDWIEKHGLEH 185 (190)
T ss_dssp TSCBCSHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4456789998888889999999999999874
No 63
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=24.08 E-value=1.5e+02 Score=20.53 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHH
Q psy13296 22 KVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58 (101)
Q Consensus 22 ~Vy~lA~~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE 58 (101)
.|+.+|..+-+-|++.+...|.+.....-..+-.++.
T Consensus 104 ~i~~~A~~L~~~f~~~l~~~~~~~~~~~~~~i~~~~~ 140 (166)
T 3fkm_X 104 VVAITGKNIETYFNNQLIVMGYNNFILKEKKINDMLK 140 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHccccccchhhhhHHHHHH
Confidence 4899999999999999999997764444333333333
No 64
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.64 E-value=31 Score=23.76 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=1.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy13296 70 HEVELELLREDNEQLVTQY 88 (101)
Q Consensus 70 ~~~ele~LreeneqL~~ql 88 (101)
...+|..|+.||+.|.+.|
T Consensus 89 V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 89 VSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHTC---------------
T ss_pred HHHHHHHHHhhccchhhhh
Confidence 3445555555555555443
No 65
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.62 E-value=1.1e+02 Score=23.60 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q psy13296 23 VQSLAGSIYQEFEK 36 (101)
Q Consensus 23 Vy~lA~~Iy~EfE~ 36 (101)
..+-+..-|+-|=.
T Consensus 147 ~~~y~~~~Y~~fl~ 160 (315)
T 2ve7_A 147 FLDYTIKCYESFMS 160 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555655544
No 66
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=23.52 E-value=2.2e+02 Score=24.91 Aligned_cols=43 Identities=19% Similarity=0.409 Sum_probs=29.6
Q ss_pred HHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhhhhhHHHHHHH
Q psy13296 25 SLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELL 77 (101)
Q Consensus 25 ~lA~~I------y~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~~~~~~ele~L 77 (101)
.+|..| -..++.++.+||. +.||..|+.++.+....+..++.|
T Consensus 52 ~~~~~i~~~~~s~~~~~~l~~~yg~----------l~il~~l~~~~~~~~~~~~~~~~l 100 (706)
T 3fhn_A 52 VIAQDIIEVGASVEGLEQLRAKYGD----------LQILNKLEKVAVQQTQMQAGVDKL 100 (706)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 3589999999997 456777777776665555555555
No 67
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.36 E-value=1.2e+02 Score=22.77 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=19.5
Q ss_pred HhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy13296 58 ESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (101)
Q Consensus 58 E~Le~~~~~~~~~~~ele~LreeneqL~~q 87 (101)
+.++.+..+-.++..++..|+.+..+|..+
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566666666667777777776666655
No 68
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.21 E-value=1.6e+02 Score=18.73 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy13296 83 QLVTQYEREKQLRKAA 98 (101)
Q Consensus 83 qL~~qlErEK~lrk~a 98 (101)
+|..++..|+-+..+|
T Consensus 43 ~lek~L~~E~~LK~QA 58 (71)
T 1uix_A 43 QFEKQLLTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888776
No 69
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=21.72 E-value=88 Score=17.56 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=8.4
Q ss_pred HHHhhhhhhHHHHHHHHH
Q psy13296 62 LAFTENQEHEVELELLRE 79 (101)
Q Consensus 62 ~~~~~~~~~~~ele~Lre 79 (101)
.+...|.+++.++..|++
T Consensus 12 eLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 12 ELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 334444445555554443
No 70
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.64 E-value=1.6e+02 Score=18.63 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy13296 68 QEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 68 ~~~~~ele~LreeneqL~~qlE 89 (101)
.+....+..|..+|.+|..+++
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666543
No 71
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=21.40 E-value=2e+02 Score=19.49 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHhHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13296 46 VKDLMPLVVNVLESLDLAFT---ENQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99 (101)
Q Consensus 46 V~~LmP~VV~vLE~Le~~~~---~~~~~~~ele~LreeneqL~~qlErEK~lrk~ae 99 (101)
+..+=|.+.+-++.+|..-. ..++.-..+.+-|+-.+.|+.+. ++|- |..||
T Consensus 43 lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR~eH-~~Kl-rr~ae 97 (98)
T 3f1i_H 43 INGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEH-REKL-RRAAE 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHhc
Confidence 34566888888777775433 34444445555556666666665 5554 44444
No 72
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=21.10 E-value=1.2e+02 Score=20.68 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 52 LVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 52 ~VV~vLE~Le~~~~~~~~~~~ele~LreeneqL~~qlE 89 (101)
-||..||.||.++.+----..+ -.....+|+.||.
T Consensus 36 SII~tle~LEkAyikD~It~~e---Yt~~c~rLL~QyK 70 (109)
T 2f6m_B 36 SIVITLDHVEKAYLKDSIDDTQ---YTNTVDKLLKQFK 70 (109)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHHH
Confidence 5788999999888764221111 4555666677764
No 73
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.02 E-value=2.5e+02 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13296 65 TENQEHEVELELLREDNEQLVTQYE 89 (101)
Q Consensus 65 ~~~~~~~~ele~LreeneqL~~qlE 89 (101)
.+|..+..+.+.|..+.++|..|||
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE 163 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFE 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544
No 74
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=20.87 E-value=1.2e+02 Score=25.28 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=40.5
Q ss_pred ccCHHHHHHHH------HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhHHHHHhhh
Q psy13296 18 VMSEKVQSLAG------SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67 (101)
Q Consensus 18 ~~se~Vy~lA~------~Iy~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~~ 67 (101)
..+++-+++|. +-|+|++.||..+|.+....---+.|..-..++.+.+++
T Consensus 379 i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~ 434 (498)
T 1fx0_B 379 IVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQP 434 (498)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788888887 457889999999999877766668888888888888876
No 75
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.83 E-value=1.8e+02 Score=18.81 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=11.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH
Q psy13296 60 LDLAFTENQEHEVELELLREDN 81 (101)
Q Consensus 60 Le~~~~~~~~~~~ele~Lreen 81 (101)
|+....+|..+..+++.++++.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666665555544443
No 76
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.56 E-value=80 Score=16.69 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy13296 28 GSIYQEFEKM 37 (101)
Q Consensus 28 ~~Iy~EfE~l 37 (101)
..+|+|+|.+
T Consensus 4 delykeledl 13 (27)
T 3twe_A 4 DELYKELEDL 13 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
Done!