RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13296
         (101 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.53
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 25  SLAGSIYQEFEKMIT---KYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRED 80
           S+     ++           + D +  ++   +NVLE       E ++    L +    
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRLSVFPPS 384


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 14/79 (17%)

Query: 30   IYQEFEKMITKYDEDVVKDLMPLVVNVLESL-DLAFTENQEHEVELELLREDNEQ--LVT 86
            I + +  MI +   D       +   + E      F      E  L L      Q  L  
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF----RSEKGL-LSATQFTQPALTL 1738

Query: 87   ----QYE--REKQLRKAAD 99
                 +E  + K L  A  
Sbjct: 1739 MEKAAFEDLKSKGLIPADA 1757


>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
           translocation, secretion, protein transport; 2.18A
           {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
           c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
           3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
          Length = 844

 Score = 25.3 bits (56), Expect = 4.3
 Identities = 8/62 (12%), Positives = 17/62 (27%)

Query: 31  YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90
           +  FE MI   +++V K +M   +      +             E       +     + 
Sbjct: 760 FAMFEHMIESIEDEVAKFVMKAEIENNLEREEVVQGQTTAHQPQEGDDNKKAKKAPVRKV 819

Query: 91  EK 92
             
Sbjct: 820 VD 821


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,429,341
Number of extensions: 75741
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 34
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)