RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13296
         (101 letters)



>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
          domain {Escherichia coli [TaxId: 562]}
          Length = 249

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 4/13 (30%), Positives = 10/13 (76%)

Query: 44 DVVKDLMPLVVNV 56
           +++ +MP VV++
Sbjct: 7  PMLEKVMPSVVSI 19


>d1huwa_ a.26.1.1 (A:) Growth hormone, somatotropin {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 191

 Score = 24.0 bits (52), Expect = 3.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 14 DSHIVMSEKVQSLAGSIYQEFEKM 37
          D+  + ++++  LA   YQEFE+ 
Sbjct: 11 DNAWLRADRLNQLAFDTYQEFEEA 34


>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 217

 Score = 23.2 bits (50), Expect = 6.5
 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 34 FEKMITKYDEDVVKDLMPLVVNVLESLD 61
          F+K+  KY    +  +   + N++ + D
Sbjct: 59 FQKLSEKYKLKELALIF--ISNLVANQD 84


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
          (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 23.4 bits (50), Expect = 7.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 23 VQSLAGSIYQEFEKMITKYDEDVVK 47
           +++ GS   E +KM+ +Y + VVK
Sbjct: 10 AEAMTGSHLDEVKKMVAEYRKPVVK 34


>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 22.9 bits (49), Expect = 8.4
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 48  DLMPLVVNVLESLDLAFTENQEHEVEL--ELLREDNEQLVTQYEREKQLRKAADQI 101
             + +V    E L  A   N +  +EL   +       L+T   R + + +    +
Sbjct: 170 TFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHL 225


>d1rw5a1 a.26.1.1 (A:1-199) Prolactin (placental lactogen) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 22.9 bits (49), Expect = 8.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 14 DSHIVMSEKVQSLAGSIYQEFEKM 37
          D  +V+S  + +L+  ++ EF+K 
Sbjct: 20 DRAVVLSHYIHNLSSEMFSEFDKR 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,743
Number of extensions: 13208
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.3 bits)