BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1330
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WK5|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|C Chain C, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|D Chain D, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
Length = 482
Score = 236 bits (602), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ EL+R KR G LS +I FV V G+A+ +QIGAMLMA+ + G+ EET LT+++
Sbjct: 36 LPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQAL 95
Query: 64 VDSGETLSWRPE---DIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
SG+ L W PE +VDKHSTGGVGDKVS+ L PALAACG KVPM+SGRGL +GGT
Sbjct: 96 AQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGT 154
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLC 180
LDKLESIPG+ V S ++ L + GC IVG ++QL P D ILY RDVTATVD+L L
Sbjct: 155 LDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLI 214
Query: 181 SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
+ASILSKK+ EG LV+DVK G A+ F E+A+E+A+ L
Sbjct: 215 TASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTL 255
>pdb|1UOU|A Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
Complex With A Small Molecule Inhibitor
Length = 474
Score = 236 bits (602), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 156/221 (70%), Gaps = 4/221 (1%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ EL+R KR G LS +I FV V G+A+ +QIGAMLMA+ + G+ EET LT+++
Sbjct: 30 LPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQAL 89
Query: 64 VDSGETLSWRPE---DIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
SG+ L W PE +VDKHSTGGVGDKVS+ L PALAACG KVPM+SGRGL +GGT
Sbjct: 90 AQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGT 148
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLC 180
LDKLESIPG+ V S ++ L + GC IVG ++QL P D ILY RDVTATVD+L L
Sbjct: 149 LDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLI 208
Query: 181 SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
+ASILSKK+ EG LV+DVK G A+ F E+A+E+A+ L
Sbjct: 209 TASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTL 249
>pdb|2J0F|A Chain A, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|B Chain B, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|C Chain C, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|D Chain D, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
Length = 482
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/221 (55%), Positives = 155/221 (70%), Gaps = 4/221 (1%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ EL+R KR G LS +I FV V G+A+ +QIGAMLMA+ + G+ EET LT+++
Sbjct: 36 LPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQAL 95
Query: 64 VDSGETLSWRPE---DIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
SG+ L W PE +VDKHSTGGVGDKVS+ L PALAACG KVPM+SGRGL +GGT
Sbjct: 96 AQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGT 154
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLC 180
LDKLESIPG+ V S ++ L + GC IVG ++QL P D ILY RDVTATVD+L L
Sbjct: 155 LDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLI 214
Query: 181 SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
+ASILSKK+ EG LV+DVK G + F E+A+E+A+ L
Sbjct: 215 TASILSKKLVEGLSALVVDVKFGAGAVFPNQEQARELAKTL 255
>pdb|1AZY|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|B Chain B, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1OTP|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1TPT|A Chain A, Three-Dimensional Structure Of Thymidine Phosphorylase
From Escherichia Coli At 2.8 Angstroms Resolution
pdb|2TPT|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
Length = 440
Score = 202 bits (515), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 143/219 (65%), Gaps = 3/219 (1%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
E++RKKR G+ LS EI F+N T + QI A+ M +F + +T E ++LT +M D
Sbjct: 6 EIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRD 65
Query: 66 SGETLSWRPEDI---VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
SG L W+ + +VDKHSTGGVGD S+ L P +AACG +PM+SGRGL +GGTLD
Sbjct: 66 SGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLD 125
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLESIPG+ + + + +VG I+G L+P D+ Y RD+TATVD++ L +A
Sbjct: 126 KLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITA 185
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SIL+KK+AEG LV+DVKVG +F TYE ++ +AE +
Sbjct: 186 SILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAI 224
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 1/219 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+++L+ KKR G L+ EI V G D Q+ A+ MA++ G+T EET ALT +M
Sbjct: 3 MVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAM 62
Query: 64 VDSGETLSWRP-EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
V SGE L + VDKHSTGGVGD ++ L P +A+ G+ V +SGRGL +GGT+D
Sbjct: 63 VQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTID 122
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLES+PG+ V S + ++E G I+G L+P D+ LY +RDVTATV+++ L ++
Sbjct: 123 KLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSIPLIAS 182
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G +V+DVK G +F K ++A+ +A ++
Sbjct: 183 SIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVM 221
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 136/215 (63%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
+ +R+KR G + ++ F+ + D Q+ A LMA F+ GL EET+ LT++M
Sbjct: 4 VAFIREKREGKKHRREDLEAFLLGYLRDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMA 63
Query: 65 DSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKL 124
SG+ L VDKHS+GGVGDKVS+ + P LAA G +SGRGL +GGT+DKL
Sbjct: 64 RSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKL 123
Query: 125 ESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASI 184
ES+PG++ + A+ + VG I + L+P D LY +RDVTATV+++ L ++SI
Sbjct: 124 ESVPGWRGEMTEAEFLERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASSI 183
Query: 185 LSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219
+SKK+A G + +V+DVKVG +F KT E+A+ +A+
Sbjct: 184 MSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAK 218
>pdb|3H5Q|A Chain A, Crystal Structure Of A Putative Pyrimidine-Nucleoside
Phosphorylase From Staphylococcus Aureus
Length = 436
Score = 159 bits (403), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 131/216 (60%), Gaps = 1/216 (0%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
I+++ KKR G+ L+ EI F+ V G D Q ++ A++ ++E +ALT + V
Sbjct: 7 IDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAXAIYFQDXNDDERVALTXAXV 66
Query: 65 DSGETLSWRP-EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
+SG+ + + + VDKHSTGGVGD ++ L P +AA + V SGRGL +GGT+DK
Sbjct: 67 NSGDXIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKXSGRGLGHTGGTIDK 126
Query: 124 LESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSAS 183
LE+I G+ V A ++E +VG + L+P D+ LY +RDVT TV+++ L ++S
Sbjct: 127 LEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLIASS 186
Query: 184 ILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219
I SKK+A G +V+DVK G +F KT E A+ +A
Sbjct: 187 IXSKKIAAGADAIVLDVKTGSGAFXKTLEDAEALAH 222
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 77 IVVDKHSTGGVGDKVSIPLVPALAACGLKV--------PMVSGRGLDFSGGTLDKLESIP 128
I +D +S G GD SIPL L L+V P + R +DFS L +
Sbjct: 191 IGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFS--VLAQQHGDN 248
Query: 129 GYQVNCSTADLKAKLSEVGCFIVGANKQ 156
V + +V C+I N++
Sbjct: 249 PMPVFSFMGNASQHPQQVPCYITHTNEK 276
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 77 IVVDKHSTGGVGDKVSIPLVPALAACGLKV--------PMVSGRGLDFSGGTLDKLESIP 128
I +D +S G GD SIPL L L+V P + R +DFS L +
Sbjct: 187 IGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFS--VLAQQHGDN 244
Query: 129 GYQVNCSTADLKAKLSEVGCFIVGANKQ 156
V + +V C+I N++
Sbjct: 245 PMPVFSFMGNASQHPQQVPCYITHTNEK 272
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 77 IVVDKHSTGGVGDKVSIPLVPALAACGLKV--------PMVSGRGLDFSGGTLDKLESIP 128
I +D +S G GD SIPL L L+V P + R +DFS L +
Sbjct: 185 IGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFS--VLAQQHGDN 242
Query: 129 GYQVNCSTADLKAKLSEVGCFIVGANKQ 156
V + +V C+I N++
Sbjct: 243 PMPVFSFMGNASQHPQQVPCYITHTNEK 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,208,305
Number of Sequences: 62578
Number of extensions: 239628
Number of successful extensions: 453
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 15
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)