Query psy1330
Match_columns 221
No_of_seqs 133 out of 1539
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:56:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05820 deoA thymidine phosph 100.0 2.1E-71 4.5E-76 514.1 25.3 221 1-221 1-224 (440)
2 TIGR02644 Y_phosphoryl pyrimid 100.0 4.4E-71 9.5E-76 507.9 24.7 217 5-221 2-219 (405)
3 TIGR02643 T_phosphoryl thymidi 100.0 1.7E-70 3.7E-75 506.4 23.3 219 3-221 2-223 (437)
4 PRK06078 pyrimidine-nucleoside 100.0 5.4E-69 1.2E-73 497.3 25.1 219 3-221 2-221 (434)
5 TIGR02645 ARCH_P_rylase putati 100.0 1.3E-65 2.9E-70 479.2 24.5 212 5-221 87-301 (493)
6 PRK04350 thymidine phosphoryla 100.0 1.3E-65 2.9E-70 479.3 24.0 212 5-221 82-296 (490)
7 TIGR03327 AMP_phos AMP phospho 100.0 3.8E-65 8.2E-70 476.3 24.0 213 4-221 87-302 (500)
8 COG0213 DeoA Thymidine phospho 100.0 4.3E-61 9.4E-66 436.8 19.3 221 1-221 1-222 (435)
9 COG0547 TrpD Anthranilate phos 100.0 1.1E-55 2.3E-60 398.0 20.4 189 1-200 1-196 (338)
10 PRK08136 glycosyl transferase 100.0 1.3E-52 2.8E-57 376.6 22.0 195 2-200 1-202 (317)
11 PLN02641 anthranilate phosphor 100.0 5.3E-52 1.1E-56 376.2 22.1 190 2-200 2-194 (343)
12 PRK07394 hypothetical protein; 100.0 7.9E-52 1.7E-56 375.2 22.1 194 2-200 3-207 (342)
13 PRK09071 hypothetical protein; 100.0 1.7E-51 3.7E-56 370.4 19.7 191 1-200 1-198 (323)
14 PRK09522 bifunctional glutamin 100.0 3.8E-51 8.1E-56 388.9 19.7 189 3-200 199-392 (531)
15 PRK00188 trpD anthranilate pho 100.0 1.7E-50 3.7E-55 366.2 22.3 190 3-200 2-194 (339)
16 PRK14607 bifunctional glutamin 100.0 3.8E-50 8.3E-55 382.7 20.8 189 3-200 194-387 (534)
17 TIGR01245 trpD anthranilate ph 100.0 8.2E-50 1.8E-54 360.6 21.7 196 8-219 1-201 (330)
18 PF00591 Glycos_transf_3: Glyc 100.0 5.2E-35 1.1E-39 254.8 0.9 131 78-210 3-148 (252)
19 KOG1438|consensus 100.0 1.8E-29 3.9E-34 219.8 7.8 164 24-189 34-221 (373)
20 PF02885 Glycos_trans_3N: Glyc 99.8 3.7E-20 8.1E-25 130.6 8.0 65 3-67 1-65 (66)
21 PRK10416 signal recognition pa 93.0 6.9 0.00015 35.5 17.0 109 4-112 31-151 (318)
22 PF04282 DUF438: Family of unk 90.1 3.4 7.3E-05 29.6 8.1 55 4-61 2-56 (71)
23 TIGR03499 FlhF flagellar biosy 89.1 16 0.00034 32.4 14.0 138 3-145 115-269 (282)
24 PRK05703 flhF flagellar biosyn 86.8 23 0.0005 33.4 13.8 154 3-161 141-314 (424)
25 PF11829 DUF3349: Protein of u 83.7 3.4 7.4E-05 31.2 5.4 55 15-69 34-91 (96)
26 PF04227 Indigoidine_A: Indigo 83.5 2 4.2E-05 38.8 4.7 149 49-204 60-225 (293)
27 PRK10867 signal recognition pa 82.9 44 0.00096 31.8 16.0 117 4-122 9-146 (433)
28 PRK14723 flhF flagellar biosyn 82.3 60 0.0013 33.2 15.1 144 17-168 122-285 (767)
29 TIGR03029 EpsG chain length de 76.9 31 0.00067 29.8 10.1 101 8-109 6-138 (274)
30 COG0128 AroA 5-enolpyruvylshik 75.4 8.7 0.00019 36.5 6.5 104 31-137 164-289 (428)
31 TIGR03481 HpnM hopanoid biosyn 75.0 14 0.0003 31.2 7.1 62 6-67 36-97 (198)
32 PF02885 Glycos_trans_3N: Glyc 74.8 12 0.00026 25.7 5.6 48 22-69 2-50 (66)
33 PF06844 DUF1244: Protein of u 73.2 3.2 6.9E-05 29.3 2.3 30 13-42 28-65 (68)
34 cd01554 EPT-like Enol pyruvate 70.5 18 0.00039 33.1 7.3 95 37-134 13-129 (408)
35 PRK09875 putative hydrolase; P 69.5 85 0.0018 28.2 11.9 92 47-144 92-201 (292)
36 TIGR03018 pepcterm_TyrKin exop 68.7 66 0.0014 26.6 10.4 59 51-109 10-71 (207)
37 PRK00771 signal recognition pa 68.7 1.1E+02 0.0024 29.1 18.7 149 3-154 4-184 (437)
38 PRK12726 flagellar biosynthesi 67.5 1.1E+02 0.0025 28.9 13.4 136 22-161 144-300 (407)
39 COG3492 Uncharacterized protei 67.3 6.5 0.00014 29.6 3.0 32 13-44 59-98 (104)
40 TIGR01425 SRP54_euk signal rec 64.5 1.3E+02 0.0029 28.6 18.1 155 3-161 8-197 (429)
41 cd01555 UdpNAET UDP-N-acetylgl 64.0 34 0.00073 31.2 7.8 94 38-133 14-128 (400)
42 cd02035 ArsA ArsA ATPase funct 62.7 28 0.0006 29.3 6.5 32 81-112 4-36 (217)
43 PRK12595 bifunctional 3-deoxy- 62.0 1.3E+02 0.0029 27.8 12.0 124 91-219 190-348 (360)
44 PRK15117 ABC transporter perip 60.3 39 0.00085 28.8 7.0 63 6-68 37-102 (211)
45 PRK11889 flhF flagellar biosyn 58.6 1.7E+02 0.0038 28.0 15.0 149 21-172 179-347 (436)
46 PF08069 Ribosomal_S13_N: Ribo 58.3 13 0.00029 25.6 3.0 28 16-43 27-54 (60)
47 PF05494 Tol_Tol_Ttg2: Toluene 58.1 18 0.00038 29.3 4.3 63 5-67 6-71 (170)
48 COG0128 AroA 5-enolpyruvylshik 58.1 47 0.001 31.6 7.6 90 41-134 29-141 (428)
49 PRK09369 UDP-N-acetylglucosami 57.5 32 0.0007 31.7 6.5 92 40-133 27-139 (417)
50 PRK11519 tyrosine kinase; Prov 57.5 92 0.002 31.4 10.1 71 78-154 528-610 (719)
51 COG2854 Ttg2D ABC-type transpo 57.0 50 0.0011 28.3 6.9 63 6-68 39-104 (202)
52 TIGR01356 aroA 3-phosphoshikim 55.4 44 0.00095 30.6 6.9 91 41-134 15-124 (409)
53 cd01556 EPSP_synthase EPSP syn 54.8 44 0.00095 30.3 6.8 95 37-135 14-129 (409)
54 PRK08154 anaerobic benzoate ca 54.6 1.1E+02 0.0024 27.3 9.3 56 48-108 105-163 (309)
55 KOG3220|consensus 54.5 22 0.00048 30.8 4.4 37 106-145 4-40 (225)
56 PRK15491 replication factor A; 54.2 27 0.00059 32.5 5.3 47 1-49 1-49 (374)
57 PRK12723 flagellar biosynthesi 54.1 1.9E+02 0.0041 27.1 17.1 151 16-172 105-281 (388)
58 TIGR01072 murA UDP-N-acetylglu 51.9 70 0.0015 29.2 7.7 93 38-133 25-138 (416)
59 TIGR01007 eps_fam capsular exo 51.4 68 0.0015 26.3 6.9 31 78-108 19-51 (204)
60 cd02069 methionine_synthase_B1 51.2 1.5E+02 0.0033 25.1 11.7 179 17-220 12-211 (213)
61 TIGR00064 ftsY signal recognit 50.9 1.7E+02 0.0038 25.7 14.7 36 77-112 73-109 (272)
62 PHA02519 plasmid partition pro 48.3 36 0.00078 31.7 5.2 64 50-114 81-147 (387)
63 COG2313 IndA Uncharacterized e 47.2 2E+02 0.0044 25.8 9.3 178 19-206 45-240 (310)
64 PRK14974 cell division protein 46.5 2.3E+02 0.0051 25.9 14.4 113 17-132 58-198 (336)
65 TIGR02644 Y_phosphoryl pyrimid 46.3 1.3E+02 0.0028 28.5 8.5 109 23-149 2-129 (405)
66 PF00690 Cation_ATPase_N: Cati 46.2 34 0.00073 23.4 3.6 64 118-186 4-69 (69)
67 PRK12830 UDP-N-acetylglucosami 45.7 55 0.0012 30.0 6.0 93 38-133 25-138 (417)
68 KOG0781|consensus 45.5 80 0.0017 30.9 7.0 116 4-121 280-422 (587)
69 PF14069 SpoVIF: Stage VI spor 44.8 40 0.00086 24.6 3.9 39 4-43 33-73 (79)
70 cd01423 MGS_CPS_I_III Methylgl 44.5 61 0.0013 24.3 5.2 53 91-152 14-76 (116)
71 PRK07394 hypothetical protein; 44.3 75 0.0016 29.2 6.5 101 4-108 27-144 (342)
72 PF13490 zf-HC2: Putative zinc 44.2 31 0.00068 20.4 2.8 27 20-46 2-28 (36)
73 PRK07178 pyruvate carboxylase 43.5 79 0.0017 30.0 6.8 130 91-220 13-149 (472)
74 PHA02909 hypothetical protein; 43.0 16 0.00035 25.1 1.5 23 186-208 3-25 (72)
75 TIGR00959 ffh signal recogniti 42.0 3.1E+02 0.0067 26.0 16.3 111 3-113 7-138 (428)
76 cd08324 CARD_NOD1_CARD4 Caspas 41.6 1E+02 0.0022 22.8 5.6 58 3-66 16-73 (85)
77 PF14193 DUF4315: Domain of un 41.4 45 0.00097 24.5 3.7 32 17-48 31-62 (83)
78 PRK12815 carB carbamoyl phosph 41.2 3E+02 0.0065 29.2 11.1 121 92-219 578-702 (1068)
79 PRK13705 plasmid-partitioning 41.2 50 0.0011 30.7 5.0 60 50-110 81-142 (388)
80 PRK14699 replication factor A; 40.8 49 0.0011 32.0 4.9 49 1-51 1-51 (484)
81 PLN02338 3-phosphoshikimate 1- 39.3 1.2E+02 0.0027 28.1 7.4 91 42-133 29-147 (443)
82 TIGR02225 recomb_XerD tyrosine 39.1 57 0.0012 27.2 4.7 47 15-61 103-149 (291)
83 PRK10236 hypothetical protein; 38.9 81 0.0017 27.7 5.5 93 6-102 116-228 (237)
84 TIGR02082 metH 5-methyltetrahy 38.8 4E+02 0.0086 28.9 11.6 102 93-219 750-854 (1178)
85 PRK09140 2-dehydro-3-deoxy-6-p 38.2 1.6E+02 0.0034 24.9 7.2 77 135-218 20-121 (206)
86 PF00589 Phage_integrase: Phag 38.1 33 0.00072 26.3 2.9 44 15-60 1-44 (173)
87 PHA00438 hypothetical protein 37.7 65 0.0014 23.5 4.0 44 21-64 36-79 (81)
88 PF01381 HTH_3: Helix-turn-hel 37.7 72 0.0016 20.2 4.0 48 8-63 1-48 (55)
89 PRK14806 bifunctional cyclohex 37.6 1.6E+02 0.0034 29.5 8.1 95 37-133 324-440 (735)
90 COG2313 IndA Uncharacterized e 37.6 1.1E+02 0.0025 27.3 6.3 144 16-172 75-225 (310)
91 COG4463 CtsR Transcriptional r 37.3 1.5E+02 0.0033 24.0 6.4 62 5-66 79-149 (153)
92 PRK08195 4-hyroxy-2-oxovalerat 36.9 2.5E+02 0.0054 25.6 8.7 84 51-145 170-261 (337)
93 TIGR01760 tape_meas_TP901 phag 36.6 2.1E+02 0.0046 25.4 8.2 163 3-172 39-224 (350)
94 COG2085 Predicted dinucleotide 36.2 57 0.0012 28.1 4.2 79 85-172 7-85 (211)
95 PF07131 DUF1382: Protein of u 35.9 51 0.0011 22.8 3.0 23 138-161 14-36 (61)
96 PRK14981 DNA-directed RNA poly 35.3 2E+02 0.0044 21.9 6.9 60 8-67 3-63 (112)
97 TIGR01319 glmL_fam conserved h 35.2 75 0.0016 30.6 5.1 24 91-114 137-162 (463)
98 COG1476 Predicted transcriptio 35.2 1.6E+02 0.0035 20.8 6.1 56 4-60 2-64 (68)
99 PRK11861 bifunctional prephena 33.9 1.4E+02 0.003 29.9 7.0 90 41-133 267-377 (673)
100 COG2511 GatE Archaeal Glu-tRNA 33.7 2.4E+02 0.0051 28.0 8.2 52 15-66 518-584 (631)
101 cd01554 EPT-like Enol pyruvate 33.6 1.4E+02 0.003 27.2 6.6 99 35-135 156-271 (408)
102 COG1228 HutI Imidazolonepropio 33.3 1.6E+02 0.0035 27.6 7.1 124 15-146 215-348 (406)
103 cd02070 corrinoid_protein_B12- 33.1 1.7E+02 0.0037 24.3 6.6 172 17-219 8-200 (201)
104 cd00532 MGS-like MGS-like doma 32.7 83 0.0018 23.6 4.2 81 91-181 13-104 (112)
105 PRK09490 metH B12-dependent me 32.3 7E+02 0.015 27.2 12.2 110 85-219 760-873 (1229)
106 PF07308 DUF1456: Protein of u 32.2 66 0.0014 22.6 3.3 59 6-65 3-64 (68)
107 PRK13869 plasmid-partitioning 32.0 1.1E+02 0.0024 28.5 5.7 62 51-112 87-159 (405)
108 PRK09841 cryptic autophosphory 31.9 3.2E+02 0.0069 27.6 9.3 71 78-154 533-615 (726)
109 cd01671 CARD Caspase activatio 31.8 1.7E+02 0.0037 20.0 6.4 59 3-67 14-72 (80)
110 PRK06256 biotin synthase; Vali 30.9 55 0.0012 29.3 3.4 26 1-26 4-29 (336)
111 PF02142 MGS: MGS-like domain 30.5 23 0.00049 25.9 0.7 68 95-171 5-86 (95)
112 PF11599 AviRa: RRNA methyltra 30.1 39 0.00085 29.6 2.2 55 156-210 123-186 (246)
113 PRK02427 3-phosphoshikimate 1- 30.0 1.8E+02 0.004 26.6 6.9 92 37-134 26-139 (435)
114 cd07311 terB_like_1 tellurium 29.3 1.6E+02 0.0035 23.8 5.5 45 18-62 19-68 (150)
115 PF02763 Diphtheria_C: Diphthe 29.1 20 0.00044 28.7 0.3 33 186-218 124-160 (187)
116 PF02374 ArsA_ATPase: Anion-tr 28.9 37 0.00081 30.4 2.0 46 78-126 3-49 (305)
117 cd01983 Fer4_NifH The Fer4_Nif 28.9 62 0.0013 22.0 2.8 31 80-110 3-34 (99)
118 PLN02913 dihydrofolate synthet 28.6 1.6E+02 0.0036 28.3 6.4 37 78-115 77-113 (510)
119 PRK06266 transcription initiat 28.3 2.2E+02 0.0047 23.6 6.3 55 4-68 10-65 (178)
120 PRK10846 bifunctional folylpol 28.3 1E+02 0.0022 28.7 4.8 53 56-112 32-84 (416)
121 PF13744 HTH_37: Helix-turn-he 27.9 1.9E+02 0.0042 20.3 5.2 52 5-63 20-71 (80)
122 smart00845 GatB_Yqey GatB doma 27.8 2.4E+02 0.0052 22.3 6.3 32 16-47 38-69 (147)
123 COG4003 Uncharacterized protei 27.6 1.1E+02 0.0024 22.8 3.8 33 18-50 46-79 (98)
124 PF04695 Pex14_N: Peroxisomal 27.5 1E+02 0.0022 24.4 4.0 31 33-66 20-50 (136)
125 TIGR03217 4OH_2_O_val_ald 4-hy 27.5 4.7E+02 0.01 23.8 9.9 85 51-146 169-261 (333)
126 PRK02427 3-phosphoshikimate 1- 27.3 3.5E+02 0.0077 24.8 8.2 102 32-134 162-289 (435)
127 PLN02641 anthranilate phosphor 27.3 2.2E+02 0.0047 26.2 6.7 49 3-53 21-69 (343)
128 cd01199 INT_Tn1545_C Tn1545-re 27.2 1.1E+02 0.0024 24.3 4.3 44 17-61 2-45 (205)
129 TIGR01356 aroA 3-phosphoshikim 27.1 1.9E+02 0.0041 26.3 6.4 80 53-134 180-270 (409)
130 PF02216 B: B domain; InterPr 27.0 1E+02 0.0022 20.8 3.3 35 32-66 3-37 (54)
131 COG0540 PyrB Aspartate carbamo 26.9 2.5E+02 0.0055 25.7 6.8 86 91-177 58-159 (316)
132 PRK10664 transcriptional regul 26.8 73 0.0016 23.3 2.9 27 5-31 4-30 (90)
133 PRK11860 bifunctional 3-phosph 26.5 1.8E+02 0.004 28.9 6.5 88 43-133 33-141 (661)
134 COG0285 FolC Folylpolyglutamat 26.5 2E+02 0.0044 27.3 6.5 36 78-114 46-81 (427)
135 PF06415 iPGM_N: BPG-independe 26.3 1.4E+02 0.003 25.9 4.9 44 78-121 32-81 (223)
136 PRK13230 nitrogenase reductase 26.1 56 0.0012 28.4 2.5 31 79-109 4-35 (279)
137 PF11251 DUF3050: Protein of u 26.0 81 0.0018 27.6 3.4 63 4-66 31-109 (232)
138 PRK14607 bifunctional glutamin 25.9 3.2E+02 0.007 26.5 7.9 48 4-52 213-260 (534)
139 COG3448 CBS-domain-containing 25.7 1.5E+02 0.0033 27.3 5.2 20 164-188 235-254 (382)
140 smart00870 Asparaginase Aspara 25.6 1.5E+02 0.0032 26.8 5.2 59 49-112 55-114 (323)
141 cd02117 NifH_like This family 25.5 60 0.0013 26.9 2.5 31 79-109 3-34 (212)
142 cd02037 MRP-like MRP (Multiple 25.5 70 0.0015 25.4 2.9 29 82-110 6-35 (169)
143 cd02032 Bchl_like This family 25.5 59 0.0013 27.9 2.6 31 79-109 3-34 (267)
144 cd01189 INT_phiLC3_C phiLC3 ph 25.5 1E+02 0.0022 24.0 3.8 44 15-60 1-44 (191)
145 PRK05294 carB carbamoyl phosph 25.5 2.1E+02 0.0045 30.3 6.9 86 52-153 918-1010(1066)
146 PF05225 HTH_psq: helix-turn-h 25.4 1.1E+02 0.0025 19.4 3.3 23 18-40 1-23 (45)
147 cd08330 CARD_ASC_NALP1 Caspase 25.4 2.4E+02 0.0052 20.2 5.4 60 2-67 15-74 (82)
148 PRK13236 nitrogenase reductase 25.4 62 0.0013 28.7 2.7 33 78-110 8-41 (296)
149 COG0033 Pgm Phosphoglucomutase 25.3 2.2E+02 0.0047 27.6 6.3 67 53-125 34-104 (524)
150 TIGR01369 CPSaseII_lrg carbamo 25.2 2.1E+02 0.0046 30.2 6.9 83 53-151 919-1008(1050)
151 TIGR01290 nifB nitrogenase cof 25.1 1.7E+02 0.0038 27.7 5.8 72 132-203 58-144 (442)
152 cd00800 INT_Lambda_C Lambda in 25.1 1.2E+02 0.0025 23.5 4.0 45 15-64 2-46 (162)
153 PRK06995 flhF flagellar biosyn 25.1 5.7E+02 0.012 24.7 9.3 110 16-132 192-316 (484)
154 PRK01130 N-acetylmannosamine-6 25.0 2.4E+02 0.0052 23.5 6.2 118 96-220 81-218 (221)
155 COG0455 flhG Antiactivator of 25.0 1.4E+02 0.003 26.3 4.8 103 83-205 10-125 (262)
156 PRK12390 1-aminocyclopropane-1 24.9 1.5E+02 0.0032 26.7 5.1 55 79-134 68-128 (337)
157 PRK08561 rps15p 30S ribosomal 24.8 1E+02 0.0022 25.3 3.5 28 16-43 27-54 (151)
158 cd07940 DRE_TIM_IPMS 2-isoprop 24.7 4.6E+02 0.0099 22.7 9.1 83 52-142 170-262 (268)
159 PRK15469 ghrA bifunctional gly 24.7 2.9E+02 0.0062 24.9 6.9 71 78-165 138-208 (312)
160 TIGR01499 folC folylpolyglutam 24.6 62 0.0013 29.7 2.6 36 78-114 20-55 (397)
161 PRK06110 hypothetical protein; 24.6 1.2E+02 0.0025 27.2 4.4 65 90-160 80-151 (322)
162 TIGR01005 eps_transp_fam exopo 24.5 6.9E+02 0.015 25.0 10.2 71 78-154 548-630 (754)
163 PF03979 Sigma70_r1_1: Sigma-7 24.4 1E+02 0.0022 22.0 3.3 46 3-51 8-53 (82)
164 PRK00188 trpD anthranilate pho 24.3 2.9E+02 0.0062 25.1 6.9 102 3-108 20-133 (339)
165 PF02637 GatB_Yqey: GatB domai 24.3 3.3E+02 0.0071 21.4 6.5 41 16-56 39-79 (148)
166 PF12976 DUF3860: Domain of Un 24.3 2.1E+02 0.0046 20.9 4.8 42 3-44 5-46 (92)
167 smart00845 GatB_Yqey GatB doma 24.2 2.7E+02 0.0058 22.0 6.0 18 15-32 54-71 (147)
168 COG0003 ArsA Predicted ATPase 23.8 74 0.0016 29.0 2.9 36 78-113 4-40 (322)
169 TIGR03070 couple_hipB transcri 23.6 1.8E+02 0.004 18.0 4.1 53 3-63 2-54 (58)
170 PLN02735 carbamoyl-phosphate s 23.4 3E+02 0.0066 29.4 7.7 98 58-169 957-1062(1102)
171 COG1348 NifH Nitrogenase subun 23.3 1.6E+02 0.0034 26.3 4.7 34 79-112 4-38 (278)
172 PF11148 DUF2922: Protein of u 23.3 83 0.0018 21.7 2.5 20 15-34 24-43 (69)
173 PF13344 Hydrolase_6: Haloacid 23.2 51 0.0011 24.4 1.5 67 78-145 2-76 (101)
174 COG3640 CooC CO dehydrogenase 23.2 1.9E+02 0.0042 25.6 5.2 61 78-145 2-65 (255)
175 PRK10558 alpha-dehydro-beta-de 23.1 1.3E+02 0.0028 26.4 4.2 81 133-220 26-112 (256)
176 TIGR02016 BchX chlorophyllide 23.1 72 0.0016 28.4 2.7 34 79-112 3-37 (296)
177 PRK11861 bifunctional prephena 22.7 2.6E+02 0.0055 28.0 6.7 102 31-134 403-530 (673)
178 KOG1097|consensus 22.6 1.9E+02 0.0041 27.4 5.4 98 13-113 151-250 (399)
179 PF14338 Mrr_N: Mrr N-terminal 22.6 2.1E+02 0.0045 20.6 4.7 36 4-41 6-42 (92)
180 PF13822 ACC_epsilon: Acyl-CoA 22.6 74 0.0016 21.8 2.1 16 52-67 12-27 (62)
181 PRK13232 nifH nitrogenase redu 22.4 70 0.0015 27.6 2.4 32 79-110 4-36 (273)
182 PRK10128 2-keto-3-deoxy-L-rham 22.4 1.5E+02 0.0032 26.3 4.5 84 129-220 21-111 (267)
183 PF01466 Skp1: Skp1 family, di 22.3 1.2E+02 0.0027 21.3 3.3 24 37-60 32-55 (78)
184 TIGR01431 adm_rel adenosine de 22.3 99 0.0021 29.8 3.6 134 12-149 226-374 (479)
185 PF14771 DUF4476: Domain of un 22.2 3.1E+02 0.0067 19.8 6.2 50 15-64 3-53 (95)
186 PF00619 CARD: Caspase recruit 22.0 2.8E+02 0.006 19.1 6.8 56 4-65 18-73 (85)
187 TIGR03239 GarL 2-dehydro-3-deo 21.9 1.5E+02 0.0033 25.8 4.4 85 129-220 15-105 (249)
188 PRK10076 pyruvate formate lyas 21.8 2.3E+02 0.0049 24.1 5.4 79 122-204 10-101 (213)
189 PRK09871 tyrosine recombinase; 21.7 1.8E+02 0.0038 23.5 4.6 47 14-61 4-50 (198)
190 COG4770 Acetyl/propionyl-CoA c 21.7 1.4E+02 0.0031 29.7 4.5 76 108-219 72-149 (645)
191 PRK05820 deoA thymidine phosph 21.6 2.2E+02 0.0047 27.3 5.7 49 4-53 22-70 (440)
192 PRK09461 ansA cytoplasmic aspa 21.5 1.7E+02 0.0037 26.7 4.8 30 178-208 219-248 (335)
193 PF09862 DUF2089: Protein of u 21.4 2.5E+02 0.0055 21.8 5.0 40 4-43 70-112 (113)
194 TIGR03882 cyclo_dehyd_2 bacter 21.3 4.8E+02 0.01 21.6 7.7 127 16-164 26-155 (193)
195 PF12977 DUF3861: Domain of Un 21.1 1.6E+02 0.0036 22.1 3.8 22 4-25 34-55 (94)
196 PLN02881 tetrahydrofolylpolygl 21.1 1.7E+02 0.0036 28.7 4.9 83 17-113 14-97 (530)
197 PRK00199 ihfB integration host 21.0 1.5E+02 0.0032 21.5 3.6 26 5-30 4-30 (94)
198 PRK08136 glycosyl transferase 21.0 3E+02 0.0065 25.0 6.3 101 4-108 25-139 (317)
199 PRK14722 flhF flagellar biosyn 21.0 6.8E+02 0.015 23.3 13.8 163 3-171 52-240 (374)
200 PRK09071 hypothetical protein; 20.9 2.8E+02 0.006 25.3 6.1 49 3-52 25-73 (323)
201 PF01656 CbiA: CobQ/CobB/MinD/ 20.8 63 0.0014 25.7 1.7 29 83-111 6-35 (195)
202 TIGR03815 CpaE_hom_Actino heli 20.8 2.2E+02 0.0048 25.2 5.4 56 49-109 71-128 (322)
203 TIGR03453 partition_RepA plasm 20.8 2.4E+02 0.0051 25.9 5.7 64 49-112 70-142 (387)
204 smart00411 BHL bacterial (prok 20.7 1.3E+02 0.0027 21.4 3.1 24 6-29 5-28 (90)
205 PRK01184 hypothetical protein; 20.7 4.3E+02 0.0094 20.9 8.7 40 106-147 4-43 (184)
206 TIGR03376 glycerol3P_DH glycer 20.7 1.6E+02 0.0034 27.0 4.4 77 90-166 9-104 (342)
207 PF00142 Fer4_NifH: 4Fe-4S iro 20.7 74 0.0016 28.5 2.2 34 79-112 3-37 (273)
208 PRK07211 replication factor A; 20.6 2E+02 0.0044 27.9 5.3 47 1-49 1-49 (485)
209 PRK05718 keto-hydroxyglutarate 20.6 4.4E+02 0.0095 22.4 6.9 76 134-216 24-123 (212)
210 COG3937 Uncharacterized conser 20.6 1.3E+02 0.0028 23.2 3.2 27 5-31 27-53 (108)
211 PF15392 Joubert: Joubert synd 20.6 44 0.00096 30.5 0.8 50 134-187 256-306 (329)
212 cd00405 PRAI Phosphoribosylant 20.5 3.1E+02 0.0068 22.5 5.9 73 129-204 55-132 (203)
213 COG0773 MurC UDP-N-acetylmuram 20.3 2E+02 0.0042 27.8 5.1 50 79-136 10-59 (459)
214 cd02040 NifH NifH gene encodes 20.2 78 0.0017 26.9 2.2 31 79-109 4-35 (270)
215 smart00851 MGS MGS-like domain 20.2 2.1E+02 0.0045 20.3 4.2 48 95-151 5-59 (90)
216 PF02627 CMD: Carboxymuconolac 20.1 2.9E+02 0.0062 18.6 6.3 60 4-63 7-67 (85)
217 cd00799 INT_Cre Cre recombinas 20.0 2.1E+02 0.0045 24.2 4.9 46 15-60 93-139 (287)
218 COG3473 Maleate cis-trans isom 20.0 4.4E+02 0.0096 23.0 6.7 96 45-153 38-149 (238)
No 1
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=2.1e-71 Score=514.13 Aligned_cols=221 Identities=53% Similarity=0.824 Sum_probs=214.3
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCC---CC
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPE---DI 77 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~---~~ 77 (221)
|++|+++|+++.+|++||+||++++|+.|++|+++|+|++||||++|+||||+||+++|++||++++.+++|+.. ..
T Consensus 1 ~m~~~~~I~kk~~g~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~ 80 (440)
T PRK05820 1 MFLAQEIIRKKRDGGALSDEEIDWFIDGYTDGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSSLNLNGP 80 (440)
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCccccCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999988631 12
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
++|+|||||||+|+||++++++|++|++|+|||||+++|++||+|+||+|||++++++++++.+++++.|++|++++.+|
T Consensus 81 ~vDkhgTGGdG~niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~e~~~~~l~~~G~~~~~~~~~l 160 (440)
T PRK05820 81 IVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSNDRFREILKDVGVAIIGQTSDL 160 (440)
T ss_pred eEEEcCCCCCCccHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCHHHHHHHHHHcCeEEEcCchhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 158 SPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 158 ~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
||+|++++++|++++|++|+|||++||||||+|+|+||+|||||||+||||||+++|++||+.|
T Consensus 161 ~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~G~~~lvlDVk~G~gAfmkt~~~A~~La~~m 224 (440)
T PRK05820 161 APADKRLYALRDVTATVESIPLITASILSKKLAEGLDALVLDVKVGSGAFMKTYEEARELARSM 224 (440)
T ss_pred ChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976
No 2
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=4.4e-71 Score=507.93 Aligned_cols=217 Identities=52% Similarity=0.816 Sum_probs=211.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCC-ceeecc
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDI-VVDKHS 83 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~-~vD~~g 83 (221)
.++|+|+.+|++||+||++++|+.|++|+++|+|++||||++|+||||+||+++|++||++++.+++|+.+++ ++|+||
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~g 81 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYTNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHS 81 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999986433 899999
Q ss_pred CCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhh
Q psy1330 84 TGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQI 163 (221)
Q Consensus 84 tGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~ 163 (221)
|||||+|+||+++|++|++|+||+|||||+++|++||+|+||++||++++++++++.+++++.|++|++++.+|||++++
T Consensus 82 TGGdG~~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~~~~~l~~~G~~fl~~~~~l~PAdk~ 161 (405)
T TIGR02644 82 TGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAEFIEIVNKVGLAIIGQTKDLAPADKK 161 (405)
T ss_pred CCCCCCCchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHHHHHHHHHcCeEEecCccccCcchhH
Confidence 99999999999999999999999999999999999999999999669999999999999999999999998899999999
Q ss_pred hHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 164 LYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 164 l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
++++|++++||||+|||++||||||+|+|+||+|||||||+||||+|+++|++||+.|
T Consensus 162 l~~lRd~~~Tv~sipLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a~~LA~~~ 219 (405)
T TIGR02644 162 LYALRDVTGTVDSIPLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDAKELAKLM 219 (405)
T ss_pred HHHHhhcccccCcHHHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875
No 3
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=1.7e-70 Score=506.38 Aligned_cols=219 Identities=52% Similarity=0.812 Sum_probs=211.6
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCC--CCC-Cce
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWR--PED-IVV 79 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~--~~~-~~v 79 (221)
-++++|+|+.+|++||++|++++|+.+++|+++|+|++|||||+++||||.+|+++|++||++++.+++|+ ... .++
T Consensus 2 ~~~~~I~kk~~G~~Lt~eE~~~~i~~i~~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~v 81 (437)
T TIGR02643 2 LPQEIIRKKRDGHSLSDAEIAQFINGITDGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLDLNGPVV 81 (437)
T ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccccCCCee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999987 322 289
Q ss_pred eeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 80 DKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 80 D~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
|+|||||||+|+||+++|++|+||++|+|||||+++|++||+|+||+|||++++++++++.+++++.|++|+++..+|||
T Consensus 82 DkhgTGGdG~niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~e~~~~~l~~~g~~f~gqa~~l~P 161 (437)
T TIGR02643 82 DKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDPALFRRVVKDVGVAIIGQTADLAP 161 (437)
T ss_pred EecCCCCCCcchhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCHHHHHHHHHHcCceEEccCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986669999
Q ss_pred hhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 160 GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
+|+++|++|++.+|++|+|||++||||||+|+|+||+|||||||+||||||+++||+||+.|
T Consensus 162 ADk~ly~lRDvt~tVds~pLi~aSImSKKlA~g~d~ivlDVk~G~gAfmk~~~~A~~LA~~m 223 (437)
T TIGR02643 162 ADKRFYATRDVTATVESIPLITASILSKKLAAGLDALVMDVKVGNGAFMPTYEESEELARSL 223 (437)
T ss_pred chhceeeeeeecCCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 4
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=5.4e-69 Score=497.35 Aligned_cols=219 Identities=43% Similarity=0.700 Sum_probs=211.7
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCC-ceee
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDI-VVDK 81 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~-~vD~ 81 (221)
+|+++|+++.+|++||+||++++|+.|++|+++|+|++||||++++||||.||+++|++||++++.+++|+...+ ++|+
T Consensus 2 ~~~~iI~k~~~g~~Lt~eE~~~~~~~i~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~ 81 (434)
T PRK06078 2 RMVDLIQKKRDGKELTTEEINFFIEGYTNGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSAIEGIKVDK 81 (434)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccCCCeeEe
Confidence 679999999999999999999999999999999999999999999999999999999999999999999874433 8999
Q ss_pred ccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhh
Q psy1330 82 HSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGD 161 (221)
Q Consensus 82 ~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~ 161 (221)
|||||||+|+|.+++|++|+||++|+|||||+++|++||+|+||+|||++++++++++.+++++.|++|+++.++|||+|
T Consensus 82 ~gTGGdG~kt~ni~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~~~~~l~~~G~~fl~~a~~~~PAd 161 (434)
T PRK06078 82 HSTGGVGDTTTLVLAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQEDFIKLVNENKVAVIGQSGNLTPAD 161 (434)
T ss_pred cCCCCCCCCchHHHHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHHHHHHHHHhCcEEEccCCCcChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999633999999
Q ss_pred hhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 162 QILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 162 ~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
++++++|++++|++++||+++||||||+|+|+|++|||||||+||||+|+++|++||+.|
T Consensus 162 k~v~~lR~v~~t~n~lPLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a~~lA~~l 221 (434)
T PRK06078 162 KKLYALRDVTATVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEELAHAM 221 (434)
T ss_pred hhhHHHhccccccChHHhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875
No 5
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=1.3e-65 Score=479.22 Aligned_cols=212 Identities=39% Similarity=0.586 Sum_probs=204.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccC
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHST 84 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gt 84 (221)
.++|+|+.+|++||++|++++|+.|++|+++|.|++|||+|+++||||.+|+.+|++||++++.+++|+..+ ++|+|||
T Consensus 87 ~~~I~kk~~G~~Lt~eE~~~ii~~i~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~~~-~vDkhgT 165 (493)
T TIGR02645 87 LRAIRKKIDGAKLDQHEIASIVGDIVDERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDREP-IMDKHSI 165 (493)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCCCC-eEEEeCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999998533 8999999
Q ss_pred CCC-CCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeec--CCCcCChhh
Q psy1330 85 GGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVG--ANKQLSPGD 161 (221)
Q Consensus 85 GGd-g~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~--a~~~~~P~~ 161 (221)
||| |+++|+.+++++|+||++|+|||||++||++||+|+||+| | +++++++++.+++++.|+||++ ++ +|||+|
T Consensus 166 GGd~gnk~ni~~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~L-g-~v~ls~e~~~~~ve~~G~~fl~G~a~-~l~PAd 242 (493)
T TIGR02645 166 GGVPGNKTSLIVVPIVAAAGLLIPKTSSRAITSAAGTADTMEVL-T-RVALSAEEIKRIVEKVGGCLVWGGAL-NLAPAD 242 (493)
T ss_pred CCCCCCCEeHHHHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHh-c-CCCCCHHHHHHHHHHCCEEEEECCCc-ccCHHH
Confidence 999 6669999999999999999999999999999999999999 8 9999999999999999999998 76 999999
Q ss_pred hhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 162 QILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 162 ~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
++++++|+.++ |+++|||++||||||+|+|+||+|||||||+||||+|.++|++||++|
T Consensus 243 k~i~~vR~~l~-vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~ 301 (493)
T TIGR02645 243 DVLIRVERPLS-IDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLF 301 (493)
T ss_pred HHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcCCCHHHHHHHHHHH
Confidence 99999999875 999999999999999999999999999999999999999999999976
No 6
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=1.3e-65 Score=479.35 Aligned_cols=212 Identities=40% Similarity=0.612 Sum_probs=204.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccC
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHST 84 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gt 84 (221)
.++|+|+.+|++||++|++++|+.|++|+++|.|++|||||+++||||.+|+++|++||++++.+++|+..+ ++|+|||
T Consensus 82 ~~~I~kk~~G~~Ls~eE~~~~i~~i~~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~~~-~vDkhgT 160 (490)
T PRK04350 82 LSAIRKKIDGEKLDKEEIEAIIRDIVAGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDRPP-VVDKHSI 160 (490)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCCCC-eEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999998533 8999999
Q ss_pred CCC-CCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeec--CCCcCChhh
Q psy1330 85 GGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVG--ANKQLSPGD 161 (221)
Q Consensus 85 GGd-g~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~--a~~~~~P~~ 161 (221)
||| |+++|+.+++++|+||++|+|||||++||++||+|+||+| | +++++++++.+++++.|+||+| ++ +|||+|
T Consensus 161 GGd~g~t~S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaL-g-~v~ls~e~~~~~l~~~G~~flfG~a~-~l~PAd 237 (490)
T PRK04350 161 GGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVL-A-PVDLSVEEIKRVVEKVGGCLVWGGAV-NLSPAD 237 (490)
T ss_pred CCCCCCCEeHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHh-h-cCCCCHHHHHHHHHHcCEEEEECCcc-ccCHHH
Confidence 999 5569999999999999999999999999999999999999 8 9999999999999999999997 76 999999
Q ss_pred hhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 162 QILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 162 ~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
++++++|++++ |+++|||++||||||+|+|+||+|||||+|+||||+|+++|++||+.|
T Consensus 238 k~l~~vR~~l~-vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~v~~~~~A~~LA~~~ 296 (490)
T PRK04350 238 DILIRVERPLS-IDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAKVRSVEEARRLARLF 296 (490)
T ss_pred HHHHHHhhhcC-CCcHHHHHHHHhhhHhhcCCCceEEecccCCCCcCCCHHHHHHHHHHH
Confidence 99999999975 999999999999999999999999999999999999999999999875
No 7
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=3.8e-65 Score=476.32 Aligned_cols=213 Identities=34% Similarity=0.541 Sum_probs=204.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeecc
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHS 83 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~g 83 (221)
-.++|+|+.+|++||++|++++|+.|++|+++|+|++|||||+++||||.+|++++++||++++.+++|+..+ ++|+||
T Consensus 87 s~~~I~kk~~G~~Ls~eEi~~ii~~i~~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~~~-vvDkhg 165 (500)
T TIGR03327 87 SVEYIKKKMDGEKLTKDEIRAIVADIVDDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDRHP-IMDKHS 165 (500)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCCCC-eEEEeC
Confidence 3589999999999999999999999999999999999999999999999999999999999999999998533 899999
Q ss_pred CCCC-CCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeec--CCCcCChh
Q psy1330 84 TGGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVG--ANKQLSPG 160 (221)
Q Consensus 84 tGGd-g~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~--a~~~~~P~ 160 (221)
|||| |+++|+.+++++|+||++|+|||||++||++||+|+||+| + +++++++++.+++++.|+||++ ++ +|||+
T Consensus 166 TGGd~gnk~nl~~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL-~-~v~ls~e~~~~~v~~~G~~fl~Gqa~-~l~PA 242 (500)
T TIGR03327 166 IGGVPGNKISLLVVPIVAAAGLTIPKTSSRAITSAAGTADVMEVL-A-PVEFSADEIKRIVEKTGGCLVWGGAT-NLAPA 242 (500)
T ss_pred CCCCCCCCEEHHHHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHh-h-CCCCCHHHHHHHHHHCCEEEEECCcc-ccCHH
Confidence 9999 6669999999999999999999999999999999999999 5 9999999999999999999976 65 99999
Q ss_pred hhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 161 DQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 161 ~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
|++++++|+ ..||+|+|||++||||||+|+|+||+|||||||+||||+|.++|++||+.|
T Consensus 243 dk~l~alrd-t~tvds~~li~aSImSKKlA~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~m 302 (500)
T TIGR03327 243 DDKIIKVER-PLSIDPRGQMLASVMAKKGAIGADHVVIDIPVGKGAKVKTVEEGRKLARDF 302 (500)
T ss_pred HHHHHHhcc-ccCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHH
Confidence 999999999 679999999999999999999999999999999999999999999999976
No 8
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.3e-61 Score=436.80 Aligned_cols=221 Identities=51% Similarity=0.760 Sum_probs=215.9
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCC-ce
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDI-VV 79 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~-~v 79 (221)
++.+.++|+|+++|..||++|++++++.+.+|.++|+|++||+||..++|+|.+|++.++.||+++++.++|+..++ ++
T Consensus 1 ~~~~v~iI~KKrdG~~L~~~EI~~~i~~~~~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~~~~~~v 80 (435)
T COG0213 1 KMRSVEIIRKKRDGKALSKEEIEFFINGYVNGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSDIPGPVV 80 (435)
T ss_pred CCchHHHHHHhcccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeeccCCCcee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999997665 89
Q ss_pred eeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 80 DKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 80 D~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
|+|||||.|+++|+.++|++|+||++|+|.++|++++++||.|.||++||++++++.++..+++.++|+..+.++.++.|
T Consensus 81 DKHStGGVgdk~sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiGqs~~LaP 160 (435)
T COG0213 81 DKHSTGGVGDKTSLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIGQSGNLAP 160 (435)
T ss_pred cccCCCCCCcccchhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEeCcCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 160 GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
+++++|.+|+.++|++++|||++||||||+|+|+|++|||||+|+||||+|+++||+||+.|
T Consensus 161 ADkklyalrdvtaTVdsipLiasSIMSKKlA~G~~~ivlDVkvG~GAfmkt~~~a~~LA~~m 222 (435)
T COG0213 161 ADKKLYALRDVTATVDSIPLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTVEDARELAKAM 222 (435)
T ss_pred ccceeEEeeeccccCCcHHHHHHHHHHHHHhccCCcEEEEecccCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 9
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=397.99 Aligned_cols=189 Identities=28% Similarity=0.360 Sum_probs=179.2
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCcee
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVD 80 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD 80 (221)
|..++++|+|+.+|++|+++||+++|+.|++|+++|.|+||||+|||+||||+||++||++||++++.+++.+... .+|
T Consensus 1 ~~~~~~~l~kl~~g~~L~~~eA~~l~~~il~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~~~-~vD 79 (338)
T COG0547 1 SMDLRKILKKLGRGRDLDREEARELFKAILSGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPAAD-PVD 79 (338)
T ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCCCC-CCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998888777533 489
Q ss_pred eccCCCCCC---cchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 81 KHSTGGVGD---KVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 81 ~~gtGGdg~---niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
+|||||||. ||||++|+|+|++|+||+|||||++||++||+|+||+| ||+++.+++++.+++++.||+|+|+| .|
T Consensus 80 i~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaL-Gv~l~~~~e~~~~~l~~~g~~FlfAp-~~ 157 (338)
T COG0547 80 IVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEAL-GVNLELSPEQAARALEETGIGFLFAP-AY 157 (338)
T ss_pred eecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEEcc-cc
Confidence 999999999 49999999999999999999999999999999999999 99999999999999999999999999 99
Q ss_pred ChhhhhhHHHhhhhC--CCCCc--hhHHHHhhhhhhhcCCCeEEEee
Q psy1330 158 SPGDQILYRVRDVTA--TVDNL--SLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 158 ~P~~~~l~~lR~~lg--Ti~~~--~l~~asilskk~~~g~~~~v~dv 200 (221)
||+|+++.++|++|| ||||+ |++++ +++++++++|
T Consensus 158 hp~~k~v~~vR~~LG~RTifN~LGPL~NP--------a~~~~qliGV 196 (338)
T COG0547 158 HPAMKHVAPVRKELGVRTIFNLLGPLLNP--------ARAKLQLIGV 196 (338)
T ss_pred CHHHHHHHHHHHHcCCCchHHhhccccCC--------CCCCceEEEE
Confidence 999999999999999 77777 66665 7999999987
No 10
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=376.57 Aligned_cols=195 Identities=19% Similarity=0.186 Sum_probs=176.4
Q ss_pred ccHHHHHHHHhCC----CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCC-C
Q psy1330 2 SGIIELLRKKRSG----NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPE-D 76 (221)
Q Consensus 2 ~~~~~~i~k~~~g----~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~-~ 76 (221)
++|+++|+++.+| ++||+|||+++|+.|++|+++|+|+||||++||+||||+||++||++||+++..+++.+.. +
T Consensus 1 ~~~~~~i~~l~~G~~~~~~Lt~eEA~~~~~~il~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~~~~~~~~ 80 (317)
T PRK08136 1 MDYAKIIKEIGRGKNGARDLDRDTARALYGAMLDGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPLTPPAGRP 80 (317)
T ss_pred CCHHHHHHHHHCCCCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCC
Confidence 3578999999999 8999999999999999999999999999999999999999999999999999987765421 2
Q ss_pred CceeeccCCCCCC--cchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCC
Q psy1330 77 IVVDKHSTGGVGD--KVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGAN 154 (221)
Q Consensus 77 ~~vD~~gtGGdg~--niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~ 154 (221)
..+||||||||++ ||||++|+++|++|+||+|||||++||++||+|+||+| ||+++.+++++.++|++.||+|+++|
T Consensus 81 ~~iD~~gtgGd~~t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaL-Gi~~~~~~~~~~~~l~~~g~~fl~ap 159 (317)
T PRK08136 81 MPVVIPSYNGARKQANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEAL-GIPPTLHADQAQAKLAEGQPAFIPVG 159 (317)
T ss_pred ceEEeCCCCCCCCCcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEEhH
Confidence 2699999999977 79999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CcCChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 155 KQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 155 ~~~~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
.|||+|+++.++|++|| ++++.|++..+++-= +++++++|++|
T Consensus 160 -~~hPa~~~~~~vR~~LG-~RT~fN~lgpL~NP~-~a~~~~~v~Gv 202 (317)
T PRK08136 160 -VLCPPLARLLALRWRMG-VRNSAHTLAKLATPF-AEGAALRLSSY 202 (317)
T ss_pred -HhCHHHHHHHHHHHHhC-CCCHHHHHHHhcCcc-ccCCCeEEEee
Confidence 99999999999999999 445545555544421 26899999987
No 11
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=5.3e-52 Score=376.20 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=175.4
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceee
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDK 81 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~ 81 (221)
-+|+++|+++.+|++||+||++++|+.|++| ++|.|+||||++||+||||+||++||+++|++++.+++.. +..+||
T Consensus 2 ~~~~~~l~~l~~g~~Lt~eEa~~~~~~il~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~--~~~~D~ 78 (343)
T PLN02641 2 ASFRQLIESLIQGTDLTEEEAEAALDFLLDD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL--VDAVDI 78 (343)
T ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC--CCCCce
Confidence 3689999999999999999999999999998 9999999999999999999999999999999999877633 237999
Q ss_pred ccCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCC
Q psy1330 82 HSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLS 158 (221)
Q Consensus 82 ~gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~ 158 (221)
|||||||+| |||++++++|++|+||+|||||++||++||+|+||+| |++++.+++++.+++++.||+|+++| .||
T Consensus 79 ~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaL-Gi~~~~~~~~~~~~l~~~g~~fl~a~-~~h 156 (343)
T PLN02641 79 VGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEAL-GVAIDLGPEGVKRCVEEVGIGFMMAP-KYH 156 (343)
T ss_pred eCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHc-CCCCCCCHHHHHHHHHhcCcEEEech-hhC
Confidence 999999984 9999999999999999999999999999999999999 99999999999999999999999998 999
Q ss_pred hhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 159 PGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 159 P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
|+|++++++|++|| +++++|++.++++- ++++++|++|
T Consensus 157 Pa~~~~~~~R~~LG-~RT~fN~lgpL~NP---a~~~~~v~GV 194 (343)
T PLN02641 157 PAMKIVAPVRKKLK-VKTVFNILGPMLNP---ARVPHAVVGV 194 (343)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHhcCC---CCCCceEEee
Confidence 99999999999999 55555556665543 7899999876
No 12
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-52 Score=375.22 Aligned_cols=194 Identities=22% Similarity=0.211 Sum_probs=175.0
Q ss_pred ccHHHHHHHHhCCC----CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Q psy1330 2 SGIIELLRKKRSGN----ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDI 77 (221)
Q Consensus 2 ~~~~~~i~k~~~g~----~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~ 77 (221)
++|+++|+++.+|+ +||+||++++|+.|++|+++|.|+||||++||+||||+||++||++||+++..+++.+....
T Consensus 3 ~~~~~~i~~l~~g~~~~~~Lt~eea~~~~~~il~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~~~~~~~ 82 (342)
T PRK07394 3 ERFRELLKKVGSGEHTSKDLTREEAADALKLMLLGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQSPSNQR 82 (342)
T ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 35899999999884 99999999999999999999999999999999999999999999999999988776442212
Q ss_pred ceeeccCCCCCC----cchhhHHHHHHhCCCcEEeecCCCCCCCCc--HHHHHhcCCCCCCCC-CHHHHHHHHHhhCcee
Q psy1330 78 VVDKHSTGGVGD----KVSIPLVPALAACGLKVPMVSGRGLDFSGG--TLDKLESIPGYQVNC-STADLKAKLSEVGCFI 150 (221)
Q Consensus 78 ~vD~~gtGGdg~----niSt~~a~vlAa~Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~~-s~~~~~~~l~~~g~~f 150 (221)
.+|+|||||||+ ||||++|+++|++|+||+|||||++||++| |+|+||+| |++++. +++++.++|++.||+|
T Consensus 83 ~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~L-Gv~~~~~~~~~~~~~l~~~g~~F 161 (342)
T PRK07394 83 PPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGL-GVDLTGLSLEQVQEGFEQTGLAF 161 (342)
T ss_pred ceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHC-CCCCCCCCHHHHHHHHHHcCcee
Confidence 689999999995 499999999999999999999999999999 99999999 999998 9999999999999999
Q ss_pred ecCCCcCChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 151 VGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 151 l~a~~~~~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
+++| .|||+|+++.++|++|| +.+++|++.++++- +++++++|++|
T Consensus 162 l~ap-~~hP~m~~~~~vR~~Lg-~RT~fN~lgpL~NP--~a~~~~~v~Gv 207 (342)
T PRK07394 162 IYQP-DHFPLAESLIPYRDEIG-KRPPLATLELIWTP--HQGDHHLVSGF 207 (342)
T ss_pred eech-hhCHHHHHHHHHHHHhC-CCCHHHHHHHhcCC--CCCCCceEEEe
Confidence 9999 99999999999999999 55555556655442 25788999986
No 13
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-51 Score=370.36 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=174.3
Q ss_pred CccHHHHHHHHhCCC----CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCC
Q psy1330 1 MSGIIELLRKKRSGN----ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPED 76 (221)
Q Consensus 1 m~~~~~~i~k~~~g~----~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~ 76 (221)
|+.|++||+++.+|+ +||+|||+++|+.|++|+++|.|+||||++||+||||+||++||++||++++.+++.+
T Consensus 1 ~~~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~il~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~~~~--- 77 (323)
T PRK09071 1 EHPFAEYIRILGKGKRGRRSLTREEARQAMGMILDGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAPPLA--- 77 (323)
T ss_pred CCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCC---
Confidence 567999999999996 9999999999999999999999999999999999999999999999999999876533
Q ss_pred Cceee-ccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCc-HHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecC
Q psy1330 77 IVVDK-HSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGG-TLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGA 153 (221)
Q Consensus 77 ~~vD~-~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~G-saDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a 153 (221)
..+|| ||||||+.+ |++++|+++|++|+||+|||||++||++| |+|+||+| ||+++.+++++.++|++.||+|+++
T Consensus 78 ~~iD~~~gtG~d~~~~~~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaL-Gv~~~~~~~~~~~~l~~~g~~fl~a 156 (323)
T PRK09071 78 VDLDWPSYAGKRRHLPWYLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEAL-GIPIARSWQEAEQALEEHNIAYLPL 156 (323)
T ss_pred CceecCCcCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHC-CCCCCCCHHHHHHHHHhcCeEEeeh
Confidence 25999 999999774 99999999999999999999999999996 99999999 9999999999999999999999999
Q ss_pred CCcCChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 154 NKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 154 ~~~~~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
| .|||+|++++++|++|| +..++|++..+++ +++++++|++|
T Consensus 157 p-~~hPa~~~~~~~R~~lg-~RT~fN~lgpL~N---Pa~~~~~v~Gv 198 (323)
T PRK09071 157 E-DFAPQLQRMIDLRNTLG-LRSPINTLARLLN---PLNAKASLQGI 198 (323)
T ss_pred H-HhChHHHHHHHHHHHhC-CCCHHHHHHHHcC---cCCCCceEEee
Confidence 9 99999999999999999 4444444554433 27999999987
No 14
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.8e-51 Score=388.88 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=174.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
.|+++|+|+.++++||+|||+++|+.|++|+++|.|+||||+++|+||||+||++||++||++++.+++++... ++|+|
T Consensus 199 ~~~~~l~~~~~~~~Lt~eea~~~~~~il~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~~~-~iD~~ 277 (531)
T PRK09522 199 TLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYL-FADIV 277 (531)
T ss_pred CHHHHHHHhhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCC-ccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999877654322 79999
Q ss_pred cCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 83 STGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 83 gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
||||||+| |||++|+++|++|+||+|||||++||++||+|+||+| |++++.+++++.+++++.||+|+++| .|||
T Consensus 278 gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~Gsadvleal-Gi~~~~~~~~~~~~l~~~g~~fl~ap-~~hp 355 (531)
T PRK09522 278 GTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAF-GINLDMNADKSRQALDELGVCFLFAP-KYHT 355 (531)
T ss_pred CCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHc-CCCCCCCHHHHHHHHHHhCcEEEEhh-HhCH
Confidence 99999985 9999999999999999999999999999999999999 99999999999999999999999999 9999
Q ss_pred hhhhhHHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 160 GDQILYRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 160 ~~~~l~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
+|++++++|++|| |+||+ +.++++ +++++++|++|
T Consensus 356 am~~~~~~R~~Lg~rT~fN~---lgpL~N---Pa~~~~~v~Gv 392 (531)
T PRK09522 356 GFRHAMPVRQQLKTRTLFNV---LGPLIN---PAHPPLALIGV 392 (531)
T ss_pred HHHHHHHHHHHhCCCcHHHH---HHHhcC---CCCCCcEEEEe
Confidence 9999999999999 55555 444433 27899999987
No 15
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.7e-50 Score=366.21 Aligned_cols=190 Identities=26% Similarity=0.313 Sum_probs=176.8
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
.|+++|+|+.+|++||+||++++|+.|++|+++|+|+||||++||+||||+||++||++||+++..+++++. ..+|+|
T Consensus 2 ~~~~~i~~l~~g~~Lt~~Ea~~~~~~il~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~--~~iDi~ 79 (339)
T PRK00188 2 TMKELLEKLVEGEDLSEEEAEELMDAIMSGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD--DAVDIV 79 (339)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC--CCCccc
Confidence 489999999999999999999999999999999999999999999999999999999999999998887653 379999
Q ss_pred cCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 83 STGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 83 gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
||||||+| |||++|+++|++|+||+|||||++||++||+|+||+| |++++.+++++.++++++||+|++++ .|||
T Consensus 80 gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~l-Gi~~~~~~~~~~~~l~~~g~~fl~a~-~~~P 157 (339)
T PRK00188 80 GTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEAL-GVNLDLSPEQVARCLEEVGIGFLFAP-LYHP 157 (339)
T ss_pred CCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHc-CCCCCCCHHHHHHHHHHcCcEEeeCc-ccCH
Confidence 99999885 9999999999999999999999999999999999999 99999999999999999999999998 9999
Q ss_pred hhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 160 GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
++++++++|++|| ++++.|++..+++- +++.++|++|
T Consensus 158 ~l~~l~~lR~~Lg-~Rt~fN~l~~L~NP---~~~~~~v~Gv 194 (339)
T PRK00188 158 AMKHVAPVRKELG-IRTIFNLLGPLTNP---ARPKRQLIGV 194 (339)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHhcCC---CCCCCEEEee
Confidence 9999999999999 67766667766554 5777777765
No 16
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.8e-50 Score=382.69 Aligned_cols=189 Identities=25% Similarity=0.316 Sum_probs=174.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
.|+++|+++.+|++||+||++++|+.|++|+++|+|+||||++||+||||+||++||++||+++..+++++.. ..+|+|
T Consensus 194 ~~~~~i~~l~~g~~Lt~~ea~~~~~~il~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~-~~~D~~ 272 (534)
T PRK14607 194 DIKSYLKKLVEGEDLSFEEAEDVMEDITDGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPSP-RTVDTC 272 (534)
T ss_pred CHHHHHHHhccCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCC-CceEEc
Confidence 3789999999999999999999999999999999999999999999999999999999999999988876532 379999
Q ss_pred cCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 83 STGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 83 gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
||||||+| |||++|+++|++|+||+|||||++||++||+|+||+| |++++.+++++.+++++.||+|+++| .|||
T Consensus 273 gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~l-Gv~~~~~~~~~~~~l~~~g~~fl~ap-~~~p 350 (534)
T PRK14607 273 GTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEAL-GVKLEMTPEEAASVLRETGFSFLFAP-LFHP 350 (534)
T ss_pred cCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHc-CCCCCCCHHHHHHHHHHhCcEEeecc-ccCH
Confidence 99999885 9999999999999999999999999999999999999 99999999999999999999999999 9999
Q ss_pred hhhhhHHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 160 GDQILYRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 160 ~~~~l~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
+|+++.++|++|| |+||+ +..+++- +++.++|++|
T Consensus 351 ~l~~~~~~R~~Lg~rTifN~---lgpL~NP---~~~~~~v~Gv 387 (534)
T PRK14607 351 AMKHAAPARRELGIRTAFNL---LGPLTNP---ARVKYQIVGV 387 (534)
T ss_pred HHHHHHHHHHHhCCCcHHHh---HHhccCC---CCCCcEEEee
Confidence 9999999999999 66665 4433332 6899999987
No 17
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=8.2e-50 Score=360.65 Aligned_cols=196 Identities=30% Similarity=0.381 Sum_probs=175.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC
Q psy1330 8 LRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV 87 (221)
Q Consensus 8 i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd 87 (221)
++++.+|++||+||++++|+.|++|+++|.|+||||+++|+||||+||++||++||++++.+++++....++|+||||||
T Consensus 1 l~~~~~~~~Lt~eEa~~~~~~il~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggd 80 (330)
T TIGR01245 1 LEKLIDGKDLSRDEAEQLMKEIMSGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGD 80 (330)
T ss_pred CchhhcCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCC
Confidence 46888999999999999999999999999999999999999999999999999999999998887411237999999999
Q ss_pred CCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhh
Q psy1330 88 GDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQIL 164 (221)
Q Consensus 88 g~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l 164 (221)
|+| |||++++++|++|+||+|||||++||++||+|+||+| |++++.+++++.++|++.||+|++++ .|||+|+++
T Consensus 81 g~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~L-Gi~~~~s~~~~~~~l~~~g~~f~~~~-~~~P~~~~l 158 (330)
T TIGR01245 81 GANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEAL-GVNLDLGPEKVARSLEETGIGFLFAP-LYHPAMKHV 158 (330)
T ss_pred CCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHc-CCCCCCCHHHHHHHHHHhCcEEeech-hhCHHHHHH
Confidence 985 8999999999999999999999999999999999999 99999999999999999999999998 999999999
Q ss_pred HHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 165 YRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 165 ~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
+++|++|| |+||. +.++++- ++++++|++| | .++.++.+++
T Consensus 159 ~~lR~~lg~rT~~N~---lgpL~NP---~~~~~~v~Gv------~--~~~~~~~~a~ 201 (330)
T TIGR01245 159 APVRRELGVRTVFNL---LGPLTNP---ARPKYQVIGV------Y--DPDLVEVMAE 201 (330)
T ss_pred HHHHHHhCCCCHHHH---HHHhcCC---CCCCCEEEcc------c--CHHHHHHHHH
Confidence 99999999 66655 4444332 6999999999 2 5555555444
No 18
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=5.2e-35 Score=254.82 Aligned_cols=131 Identities=32% Similarity=0.384 Sum_probs=117.5
Q ss_pred ceeeccCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCC
Q psy1330 78 VVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGAN 154 (221)
Q Consensus 78 ~vD~~gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~ 154 (221)
++|+|||||||.| +||++|+++|++|+||+|||||++|+++||+|+||+| |+++++++++++++|+++||+|++++
T Consensus 3 ~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~L-Gv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 3 VVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEAL-GVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp EEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHS-TB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred ceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhc-CCCcCCCHHHHHHHhhccCeEEecch
Confidence 7999999999996 7999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CcCChhhhhhHHHhhhhC--CCCCc--hhHHH--------HhhhhhhhcCCCeEEEeeecCCCCCCCC
Q psy1330 155 KQLSPGDQILYRVRDVTA--TVDNL--SLCSA--------SILSKKVAEGTKYLVIDVKVGEASFFKT 210 (221)
Q Consensus 155 ~~~~P~~~~l~~lR~~lg--Ti~~~--~l~~a--------silskk~~~g~~~~v~dv~~g~~a~~~~ 210 (221)
.|||+++++.++|++|| |+||+ |++++ ++.||++......++.+++++++.+++.
T Consensus 82 -~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G 148 (252)
T PF00591_consen 82 -NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKG 148 (252)
T ss_dssp -HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEE
T ss_pred -hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEec
Confidence 99999999999999999 88888 88888 7777777777777777777777777665
No 19
>KOG1438|consensus
Probab=99.96 E-value=1.8e-29 Score=219.81 Aligned_cols=164 Identities=22% Similarity=0.240 Sum_probs=135.1
Q ss_pred HHHHHHhcC--CCCHH--HHHHHHHHHHccC--CCHHHHHHHHHHHHhhCCCCCCC----------CCCCceeeccCCCC
Q psy1330 24 KFVNLTVTG--TAEDS--QIGAMLMAMFING--LTNEETIALTKSMVDSGETLSWR----------PEDIVVDKHSTGGV 87 (221)
Q Consensus 24 ~~~~~il~g--~~~~~--Qi~AfL~alr~kg--et~eEl~g~~~am~~~~~~~~~~----------~~~~~vD~~gtGGd 87 (221)
.+.+.+..+ +..+. +...||.++|... +.+|-+....+|+..+...+..+ ..++.+||+|||||
T Consensus 34 ~al~~~~t~s~ks~~~~t~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGD 113 (373)
T KOG1438|consen 34 PALANASTSSIKSFNQLTETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGD 113 (373)
T ss_pred HHHHhcCcCccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCC
Confidence 344445544 33333 4499999999765 35777888999998887332221 11338999999999
Q ss_pred CCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCC-CCCHHHHHHHHHhhCceeecCCCcCChhhhh
Q psy1330 88 GDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQV-NCSTADLKAKLSEVGCFIVGANKQLSPGDQI 163 (221)
Q Consensus 88 g~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~-~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~ 163 (221)
|.| +||.+|+++|+||++|+||||++.||.+|++|+|++| ||++ +.+++.+.+++++.+|.|+.+| -|||+|++
T Consensus 114 G~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~l-GCd~l~v~p~~i~~~~e~~~f~Fl~aP-m~Hp~mk~ 191 (373)
T KOG1438|consen 114 GANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEAL-GCDVLDVGPEGIKRCVEEGGFGFLMAP-MYHPAMKI 191 (373)
T ss_pred CcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhc-CceeeccCCcccccccccCceeEEech-hhcccccc
Confidence 996 9999999999999999999999999999999999999 9875 7899999999999999999999 89999999
Q ss_pred hHHHhhhhC--CCCCc--hhHHHHhhhhhh
Q psy1330 164 LYRVRDVTA--TVDNL--SLCSASILSKKV 189 (221)
Q Consensus 164 l~~lR~~lg--Ti~~~--~l~~asilskk~ 189 (221)
+.++||+|| ||||+ |++++--.|+++
T Consensus 192 V~piRK~LgipTvFNilGPlLnP~~v~~ri 221 (373)
T KOG1438|consen 192 VGPIRKKLGIPTVFNILGPLLNPARVSYRI 221 (373)
T ss_pred hhHHHHhcCCccHHHhcccccCcchhhhhe
Confidence 999999999 99999 777664445443
No 20
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.82 E-value=3.7e-20 Score=130.63 Aligned_cols=65 Identities=35% Similarity=0.492 Sum_probs=54.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
+|+++|+++.+|++||++|++++++.|++|+++|.|+||||+++|+||||+||++||++||++++
T Consensus 1 ~~~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 1 MIKEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp -HHHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999999986
No 21
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.96 E-value=6.9 Score=35.46 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC--C---CHHHHHH-HHHHHHhhCC----CCCCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING--L---TNEETIA-LTKSMVDSGE----TLSWR 73 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg--e---t~eEl~g-~~~am~~~~~----~~~~~ 73 (221)
+.+-++++..++.++.+-..++...++...+++.-.-.++-.++-+. + +.+++.. +.+.+.+... .+...
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 110 (318)
T PRK10416 31 FGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELLKEELAEILEPVEKPLNIE 110 (318)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCcCCcccccc
Confidence 33445666667889999999999999999999988888888876542 1 3455444 3335544332 22221
Q ss_pred C-CCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 74 P-EDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 74 ~-~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
. .+.++=++|.+|.|+. +.--.|..++..|.+|..-+..
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 1 1237888999999964 2222333445668888887754
No 22
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=90.11 E-value=3.4 Score=29.57 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~ 61 (221)
++++|+++-+|. +.++.++-|...+. .+++.+|+..=-.|=-.|.+++|+..+.+
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~~-~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLFS-DVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 689999999997 77899999999987 58999999987777779999999998875
No 23
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.05 E-value=16 Score=32.39 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred cHHHHHHHHhCCC--CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHH-HHHHHHHHHhhCCC----CCCCCC
Q psy1330 3 GIIELLRKKRSGN--ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEE-TIALTKSMVDSGET----LSWRPE 75 (221)
Q Consensus 3 ~~~~~i~k~~~g~--~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eE-l~g~~~am~~~~~~----~~~~~~ 75 (221)
.++.+|.++..+. .--.++..++.+.+....+++.-.-.++--++-.. +.++ ...+.+.+.+.... .++...
T Consensus 115 ~lk~~l~~~~~~~~~~~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 193 (282)
T TIGR03499 115 ALRELLERLLAGLAWLQRDPEGAKLLERLLRAGVSPELARELLEKLPERA-DAEDAWRWLREALEKMLPVKPEEDEILEQ 193 (282)
T ss_pred HHHHHHHHHHHhhhhcccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHhccCCccccccCC
Confidence 4666666666531 11235667888899999999988888887776432 3333 34466666555431 112111
Q ss_pred CCceeeccCCCCCCcchhhHHHH--HHhC-C-CcEEeecCCCCCCCCcHHHHH----hcCCCCCC--CCCHHHHHHHHHh
Q psy1330 76 DIVVDKHSTGGVGDKVSIPLVPA--LAAC-G-LKVPMVSGRGLDFSGGTLDKL----ESIPGYQV--NCSTADLKAKLSE 145 (221)
Q Consensus 76 ~~~vD~~gtGGdg~niSt~~a~v--lAa~-G-v~V~kHG~r~~ts~~GsaDvL----e~L~Gi~~--~~s~~~~~~~l~~ 145 (221)
..++=++|..|.|+. +|++.+. ++.. | .+|.....+ +.+.|..+-| +.+ |+++ ..+++++.+.+++
T Consensus 194 ~~vi~~vGptGvGKT-Tt~~kLa~~~~~~~g~~~V~li~~D--~~r~~a~eql~~~~~~~-~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKT-TTLAKLAARFVLEHGNKKVALITTD--TYRIGAVEQLKTYAKIL-GVPVKVARDPKELRKALDR 269 (282)
T ss_pred CeEEEEECCCCCCHH-HHHHHHHHHHHHHcCCCeEEEEECC--ccchhHHHHHHHHHHHh-CCceeccCCHHHHHHHHHH
Confidence 237788999999964 2222222 2222 4 788777655 3344554333 335 6654 3466667776664
No 24
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.76 E-value=23 Score=33.38 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=91.1
Q ss_pred cHHHHHHHHhCCC---CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHH--HHHHHHHHHHhhCCCCCCCC--C
Q psy1330 3 GIIELLRKKRSGN---ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNE--ETIALTKSMVDSGETLSWRP--E 75 (221)
Q Consensus 3 ~~~~~i~k~~~g~---~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~e--El~g~~~am~~~~~~~~~~~--~ 75 (221)
.++..|....... .-..+...++.+.++...+++.-+-.++-.++-+....+ -...+.+.+.+.....+++. .
T Consensus 141 ~lk~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 220 (424)
T PRK05703 141 ELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVEDILKQ 220 (424)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccccccccC
Confidence 4566666555442 334556677888899999999888888887776655444 34455555555432222111 1
Q ss_pred CCceeeccCCCCCCcchhhH--HHHHH--hCCCcEEeecCCCCCCCCcHHHHH----hcCCCCCC--CCCHHHHHHHHHh
Q psy1330 76 DIVVDKHSTGGVGDKVSIPL--VPALA--ACGLKVPMVSGRGLDFSGGTLDKL----ESIPGYQV--NCSTADLKAKLSE 145 (221)
Q Consensus 76 ~~~vD~~gtGGdg~niSt~~--a~vlA--a~Gv~V~kHG~r~~ts~~GsaDvL----e~L~Gi~~--~~s~~~~~~~l~~ 145 (221)
..++=++|.+|.|+. +|++ |..++ ..|.+|..-... +.+.|+.+-| +.+ |+++ ..+++++.+.+++
T Consensus 221 ~~~i~~vGptGvGKT-Tt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~-~vp~~~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKT-TTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIM-GIPVEVVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHH-HHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHh-CCceEccCCHHhHHHHHHH
Confidence 226778999999974 2222 22222 347778766543 2345554443 335 6654 4567777776664
Q ss_pred ---hCceeecCCCcCChhh
Q psy1330 146 ---VGCFIVGANKQLSPGD 161 (221)
Q Consensus 146 ---~g~~fl~a~~~~~P~~ 161 (221)
..+.++..+ -+.|..
T Consensus 297 ~~~~DlVlIDt~-G~~~~d 314 (424)
T PRK05703 297 LRDCDVILIDTA-GRSQRD 314 (424)
T ss_pred hCCCCEEEEeCC-CCCCCC
Confidence 456788776 566654
No 25
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=83.66 E-value=3.4 Score=31.24 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhc-CC--CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCC
Q psy1330 15 NELSPGEIAKFVNLTVT-GT--AEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGET 69 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~-g~--~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~ 69 (221)
+.||.||..++...+.. |. .++.+|+.+...+.-.-.|++|+.-....|...+=+
T Consensus 34 r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~Laa~GWP 91 (96)
T PF11829_consen 34 RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLAAAGWP 91 (96)
T ss_dssp TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHHTTT-G
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhCCCC
Confidence 55999999999999974 33 388999999999998889999999999999887733
No 26
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=83.51 E-value=2 Score=38.80 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=67.9
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCc------HHH
Q psy1330 49 NGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGG------TLD 122 (221)
Q Consensus 49 kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~G------saD 122 (221)
=|.|.+|+..+++.=.. ..+++.. + +=..+..|.+|--+--...+++..+|++|.-.|+-|==++.+ |+|
T Consensus 60 vGl~~~ele~la~~~~~-~~K~s~R--D-l~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaD 135 (293)
T PF04227_consen 60 VGLSEEELERLADAGKG-VIKVSRR--D-LAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISAD 135 (293)
T ss_dssp ES--HHHHHHHHHH-----EEE-GG--G-HHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HH
T ss_pred EcCCHHHHHHHHHhccC-CeeecHh--h-HHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhH
Confidence 47889999988875211 1111111 1 111233334443333334467777999999998765333332 678
Q ss_pred HHh--cCC------CCCCCCCHHHHHHHHHhhCceee-cCCCcCChhhhhhH-HHhhhhCCCCCchhHHHHhhhhhhhcC
Q psy1330 123 KLE--SIP------GYQVNCSTADLKAKLSEVGCFIV-GANKQLSPGDQILY-RVRDVTATVDNLSLCSASILSKKVAEG 192 (221)
Q Consensus 123 vLe--~L~------Gi~~~~s~~~~~~~l~~~g~~fl-~a~~~~~P~~~~l~-~lR~~lgTi~~~~l~~asilskk~~~g 192 (221)
+-| .-| |++--++.....+.||..|+..+ +.. +..|++..-- .++-.. .+++.-.++.-+-+++- .|
T Consensus 136 L~eL~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t-~~fPaFy~~~Sg~~~~~-~~d~~~e~A~~~~~~~~-lg 212 (293)
T PF04227_consen 136 LTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGT-DEFPAFYTRSSGFKSPY-RVDSPEEAARIIRAHWQ-LG 212 (293)
T ss_dssp HHHHTTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES--SB--BTTBS--S-B----EE-SHHHHHHHHHHHHH-TT
T ss_pred HHHHhcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecC-CCCCeeeccCCCCCCCc-ccCCHHHHHHHHHHHHH-hC
Confidence 744 333 77777899999999999999766 555 7888875431 111111 36666665554444444 45
Q ss_pred -CCeEEEeeecCC
Q psy1330 193 -TKYLVIDVKVGE 204 (221)
Q Consensus 193 -~~~~v~dv~~g~ 204 (221)
...+++-+|+=+
T Consensus 213 l~~g~lvanPiP~ 225 (293)
T PF04227_consen 213 LPSGVLVANPIPE 225 (293)
T ss_dssp --SEEEEE----G
T ss_pred CCCeEEEEccCCh
Confidence 457777777655
No 27
>PRK10867 signal recognition particle protein; Provisional
Probab=82.89 E-value=44 Score=31.76 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=70.4
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHHHhcCCCCHHHHHHHHHHHHcc--CC------CHHH-HHH-HHHHHHhhC--
Q psy1330 4 IIELLRKKRSGNELSPGEIA----KFVNLTVTGTAEDSQIGAMLMAMFIN--GL------TNEE-TIA-LTKSMVDSG-- 67 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~----~~~~~il~g~~~~~Qi~AfL~alr~k--ge------t~eE-l~g-~~~am~~~~-- 67 (221)
+...++++.....||.+... ++-..++...++..-.-.|+-.++-+ |+ ++.+ +.. +.+.+.+..
T Consensus 9 l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~ 88 (433)
T PRK10867 9 LSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGG 88 (433)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 66778888888889887544 44555789999998888888887643 32 2322 322 222333322
Q ss_pred --CCCCCCC-CCCceeeccCCCCCCc-chhhHHHHHHhC-CCcEEeecCCCCCCCCcHHH
Q psy1330 68 --ETLSWRP-EDIVVDKHSTGGVGDK-VSIPLVPALAAC-GLKVPMVSGRGLDFSGGTLD 122 (221)
Q Consensus 68 --~~~~~~~-~~~~vD~~gtGGdg~n-iSt~~a~vlAa~-Gv~V~kHG~r~~ts~~GsaD 122 (221)
.++.+.. .+.++=++|..|.|+. ++.-.|..++.. |.+|..-...- .+.+..+
T Consensus 89 ~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~--~R~aa~e 146 (433)
T PRK10867 89 ENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV--YRPAAIE 146 (433)
T ss_pred CcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc--cchHHHH
Confidence 1232221 1337888999999974 333334445556 89888776553 3444433
No 28
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.27 E-value=60 Score=33.24 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH-HHHHhhCCCCC-----CCCCCCceeeccCCCCCCc
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT-KSMVDSGETLS-----WRPEDIVVDKHSTGGVGDK 90 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~-~am~~~~~~~~-----~~~~~~~vD~~gtGGdg~n 90 (221)
.......++.+.+++..+++.-+-.|+--+.- +.+.+++..++ +.+.+....++ ++. ..++=++|..|.|+
T Consensus 122 ~~~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~-~~~~~~~~~~l~~~L~~~l~il~~~~~~~~~-g~Vi~lVGpnGvGK- 198 (767)
T PRK14723 122 GRDPLRASLFRWLLGAGFSGQLARALLERLPV-GYDRPAAMAWIRNELATHLPVLRDEDALLAQ-GGVLALVGPTGVGK- 198 (767)
T ss_pred cChHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhhccCCCcccCC-CeEEEEECCCCCcH-
Confidence 44444566888899999999877777776643 44555544433 34444322111 111 23788899999997
Q ss_pred chhhHHHHHH----hCC-CcEEeecCCCCCCCCcHHHHH----hcCCCCCCC--CCHHHHHHHHHh---hCceeecCCCc
Q psy1330 91 VSIPLVPALA----ACG-LKVPMVSGRGLDFSGGTLDKL----ESIPGYQVN--CSTADLKAKLSE---VGCFIVGANKQ 156 (221)
Q Consensus 91 iSt~~a~vlA----a~G-v~V~kHG~r~~ts~~GsaDvL----e~L~Gi~~~--~s~~~~~~~l~~---~g~~fl~a~~~ 156 (221)
||+++.+++ ..| .+|..-... +.+.|+.+-| +.+ |+++. .+++++.+.+++ ..++++..+ -
T Consensus 199 -TTTiaKLA~~~~~~~G~kkV~lit~D--t~RigA~eQL~~~a~~~-gvpv~~~~~~~~l~~al~~~~~~D~VLIDTA-G 273 (767)
T PRK14723 199 -TTTTAKLAARCVAREGADQLALLTTD--SFRIGALEQLRIYGRIL-GVPVHAVKDAADLRFALAALGDKHLVLIDTV-G 273 (767)
T ss_pred -HHHHHHHHhhHHHHcCCCeEEEecCc--ccchHHHHHHHHHHHhC-CCCccccCCHHHHHHHHHHhcCCCEEEEeCC-C
Confidence 344444443 334 466554433 4566776543 456 77663 478888777775 456788776 6
Q ss_pred CChhhhhhHHHh
Q psy1330 157 LSPGDQILYRVR 168 (221)
Q Consensus 157 ~~P~~~~l~~lR 168 (221)
.+|....+...-
T Consensus 274 Rs~~d~~l~eel 285 (767)
T PRK14723 274 MSQRDRNVSEQI 285 (767)
T ss_pred CCccCHHHHHHH
Confidence 666555544433
No 29
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=76.92 E-value=31 Score=29.81 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=54.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHH------------HhcCCCCHHHHHHHHHHHHccCCC--------HHHHH-------HHH
Q psy1330 8 LRKKRSGNELSPGEIAKFVNL------------TVTGTAEDSQIGAMLMAMFINGLT--------NEETI-------ALT 60 (221)
Q Consensus 8 i~k~~~g~~Lt~eEa~~~~~~------------il~g~~~~~Qi~AfL~alr~kget--------~eEl~-------g~~ 60 (221)
.+.+.+..-++.++.+.+... +-.|.+++.|+..++... ++-+. ..+.. .+.
T Consensus 6 ~~~L~~~g~i~~e~l~~a~~~~~~~~~~l~~~L~~~~~ls~~~l~~~la~~-~~~p~vdl~~~~~~~~~~~~~~~~~~~~ 84 (274)
T TIGR03029 6 GKVLLDAGKLSEDEAERILRLQKQENIRFGEAALRLGLINEDDIRQALSRQ-FEYPYLPPNDGSFSPDLIAAYQPFSPQV 84 (274)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhCccHHHHHHHcCCCCHHHHHHHHHHH-hCCCCccccccccccccccccCCCCHHH
Confidence 344445556677776544332 224557777777777553 11111 11111 355
Q ss_pred HHHHhhCCCCCC---CCCCC-ceeeccCCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 61 KSMVDSGETLSW---RPEDI-VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 61 ~am~~~~~~~~~---~~~~~-~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
++++..-..+.. ..... +.=..+.||.|+. ++.-.|..+|..|.+|..-
T Consensus 85 e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 85 EALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 555543222211 11122 3444556888985 6777788889999999864
No 30
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=75.41 E-value=8.7 Score=36.48 Aligned_cols=104 Identities=13% Similarity=0.028 Sum_probs=67.2
Q ss_pred cCCCCHHHHHHHHHHHHccCCCHHH-----------HHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCc------ch
Q psy1330 31 TGTAEDSQIGAMLMAMFINGLTNEE-----------TIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDK------VS 92 (221)
Q Consensus 31 ~g~~~~~Qi~AfL~alr~kget~eE-----------l~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~n------iS 92 (221)
++.++..|+.++|++.....+.... +.--.+-|+.++..+..+.. .+=++|.+ ..+.+ +|
T Consensus 164 ~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--~~~i~~g~~~~~~~~~VpgD~S 241 (428)
T COG0128 164 DGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--RFYIPGGQKLTPGDYDVPGDYS 241 (428)
T ss_pred eccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--EEEECCCccccCceEEcCCChh
Confidence 5778999999999998888744332 23345566788877765532 34445422 12221 66
Q ss_pred hhHHHHHHhC---CCc-EEeecCCCCCCCCcHHHHHhcCCCCCCCCCHH
Q psy1330 93 IPLVPALAAC---GLK-VPMVSGRGLDFSGGTLDKLESIPGYQVNCSTA 137 (221)
Q Consensus 93 t~~a~vlAa~---Gv~-V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~ 137 (221)
.++-|++|++ ++. |.++.-...+...+..|+|+.+ |.++....+
T Consensus 242 SAafflaAaai~~~~~~i~~~~v~~~~~~~~~~~vl~~M-Ga~i~~~~~ 289 (428)
T COG0128 242 SAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKM-GADIEIGDD 289 (428)
T ss_pred hHHHHHHHHHhcCCCceeeeccCCcCcchhHHHHHHHHc-CCeEEEccC
Confidence 6666666654 666 6666655545567788999999 998765433
No 31
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=74.98 E-value=14 Score=31.19 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
+++..+...+.+..++-.+.++.+++..++-..++-+.++-+.+..|+++-..|++++++..
T Consensus 36 ~vl~~l~~~~~~~~~~~~~~l~~iv~~~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l 97 (198)
T TIGR03481 36 ALLDVMKEAKKLGYQGRYTKLAPAVREAFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELS 97 (198)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 45555555555667788899999999999999999999999999999999999999998854
No 32
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=74.79 E-value=12 Score=25.72 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCC
Q psy1330 22 IAKFVNLTVTGT-AEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGET 69 (221)
Q Consensus 22 a~~~~~~il~g~-~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~ 69 (221)
.+++++.+.+|+ .+..|+..++-.+--...++.++++|.-+++-.+..
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kget 50 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKGET 50 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcC
Confidence 356677777665 666777777777665556888899999998877644
No 33
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=73.23 E-value=3.2 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHH--------hcCCCCHHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLT--------VTGTAEDSQIGAM 42 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~i--------l~g~~~~~Qi~Af 42 (221)
+|.+++.+|+++.+-.+ ...++||+|+++|
T Consensus 28 ~g~~~~~d~ARE~vYGMPy~eWK~~~Q~~At~eQ~aaf 65 (68)
T PF06844_consen 28 RGIEMDKDEAREIVYGMPYDEWKAKHQTEATPEQLAAF 65 (68)
T ss_dssp CT----HHHHHHHHHSS-HHHHCHCH-----HHHHHHH
T ss_pred cCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHh
Confidence 47799999999998654 3668999999998
No 34
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=70.55 E-value=18 Score=33.11 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCC-----------C--cchhhHH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVG-----------D--KVSIPLV 96 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg-----------~--niSt~~a 96 (221)
.|..+++.|....|.+ .+++....++|++.+..+.+.. . .+-+.|.|+.+ . ..+-+++
T Consensus 13 ~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~-~-~~~v~g~~~~~~~~~~~~~~~g~s~~~~~~l~ 90 (408)
T cd01554 13 ISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD-G-VITIQGVGMAGLKAPQNALNLGNSGTAIRLIS 90 (408)
T ss_pred HHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC-C-EEEEEecCCCCCCCCCceEEccCccHHHHHHH
Confidence 4557777787777765 5789999999999998877543 1 23333333211 1 1111223
Q ss_pred HHHHhCCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCCC
Q psy1330 97 PALAACGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVNC 134 (221)
Q Consensus 97 ~vlAa~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~~ 134 (221)
.+++..+.+|...|......+. .-.|+|+++ |+++..
T Consensus 91 a~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~-Ga~i~~ 129 (408)
T cd01554 91 GVLAGADFEVELFGDDSLSKRPMDRVTLPLKKM-GASISG 129 (408)
T ss_pred HHHHcCCCeEEEECCchhhcCChHHHHHHHHHC-CCEEEE
Confidence 3333445688888988776553 346999999 998854
No 35
>PRK09875 putative hydrolase; Provisional
Probab=69.54 E-value=85 Score=28.16 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=59.8
Q ss_pred HccCCCHHHHHH-HHHHHHhhCCCCCCCCCCCceeeccCCCCCC-----cchhhHHHHHHhCCCcEEeecCCCCCCCCcH
Q psy1330 47 FINGLTNEETIA-LTKSMVDSGETLSWRPEDIVVDKHSTGGVGD-----KVSIPLVPALAACGLKVPMVSGRGLDFSGGT 120 (221)
Q Consensus 47 r~kget~eEl~g-~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~-----niSt~~a~vlAa~Gv~V~kHG~r~~ts~~Gs 120 (221)
.++..|.||++. +++-+.+-...-... +++|=.+|+....- ++.-++|....+.|+||.-|-..+ +.|.
T Consensus 92 ~~~~~~~e~la~~~i~ei~~Gi~gt~ik--aGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~---~~g~ 166 (292)
T PRK09875 92 HVATRSVQELAQEMVDEIEQGIDGTELK--AGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS---TMGL 166 (292)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhccCCCc--ccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCc---cchH
Confidence 455788899886 555555554432222 34675677654322 277777777888899999996543 2444
Q ss_pred --HHHHhcCCCCCC----------CCCHHHHHHHHH
Q psy1330 121 --LDKLESIPGYQV----------NCSTADLKAKLS 144 (221)
Q Consensus 121 --aDvLe~L~Gi~~----------~~s~~~~~~~l~ 144 (221)
.|+|+.. |++. ..+++...++++
T Consensus 167 e~l~il~e~-Gvd~~rvvi~H~d~~~d~~~~~~l~~ 201 (292)
T PRK09875 167 EQLALLQAH-GVDLSRVTVGHCDLKDNLDNILKMID 201 (292)
T ss_pred HHHHHHHHc-CcCcceEEEeCCCCCCCHHHHHHHHH
Confidence 5889999 9942 236777777775
No 36
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.73 E-value=66 Score=26.62 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCCCceeecc-CCCCCCc-chhhHHHHHHh-CCCcEEee
Q psy1330 51 LTNEETIALTKSMVDSGETLSWRPEDIVVDKHS-TGGVGDK-VSIPLVPALAA-CGLKVPMV 109 (221)
Q Consensus 51 et~eEl~g~~~am~~~~~~~~~~~~~~~vD~~g-tGGdg~n-iSt~~a~vlAa-~Gv~V~kH 109 (221)
.+.||+.-+-..++.....-.......++=++| .||.|+. ++...|..+|. .|.+|+.-
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 346777777777765442111111112555554 6888985 56666777775 69999863
No 37
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.73 E-value=1.1e+02 Score=29.13 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=88.7
Q ss_pred cHHHHHHHHhCCCCCCHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHc--cC------CCH-HH-HHHHHHHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSPGEI----AKFVNLTVTGTAEDSQIGAMLMAMFI--NG------LTN-EE-TIALTKSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa----~~~~~~il~g~~~~~Qi~AfL~alr~--kg------et~-eE-l~g~~~am~~~~~ 68 (221)
.+...++++.....||.+.. +++-..++...++..-.-.|+-.++- .| .++ ++ +..+.+.+.+...
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 46788899998889999944 45667778999999999999888753 33 233 22 3334444444322
Q ss_pred C----CCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHH----HhcCCCCCCCC-----
Q psy1330 69 T----LSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK----LESIPGYQVNC----- 134 (221)
Q Consensus 69 ~----~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDv----Le~L~Gi~~~~----- 134 (221)
. ...+..+.++=++|..|.|+. +..-.|..+...|.+|..-..... +.+..+- .+.+ |+++..
T Consensus 84 ~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~--R~aa~eQL~~la~~~-gvp~~~~~~~~ 160 (437)
T PRK00771 84 EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY--RPAAYDQLKQLAEKI-GVPFYGDPDNK 160 (437)
T ss_pred CCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC--CHHHHHHHHHHHHHc-CCcEEecCCcc
Confidence 1 112122336778999999974 222334445667999988665542 3344443 3455 665432
Q ss_pred CHHH-HHHH---HHhhCceeecCC
Q psy1330 135 STAD-LKAK---LSEVGCFIVGAN 154 (221)
Q Consensus 135 s~~~-~~~~---l~~~g~~fl~a~ 154 (221)
++.+ +.+. +++..++++..+
T Consensus 161 d~~~i~~~al~~~~~~DvVIIDTA 184 (437)
T PRK00771 161 DAVEIAKEGLEKFKKADVIIVDTA 184 (437)
T ss_pred CHHHHHHHHHHHhhcCCEEEEECC
Confidence 2222 2333 344577788665
No 38
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.52 E-value=1.1e+02 Score=28.89 Aligned_cols=136 Identities=12% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHcc--C---CCHHHHHHHHHHHHhhCCCCCC--CC-CCCceeeccCCCCCCc-ch
Q psy1330 22 IAKFVNLTVTGTAEDSQIGAMLMAMFIN--G---LTNEETIALTKSMVDSGETLSW--RP-EDIVVDKHSTGGVGDK-VS 92 (221)
Q Consensus 22 a~~~~~~il~g~~~~~Qi~AfL~alr~k--g---et~eEl~g~~~am~~~~~~~~~--~~-~~~~vD~~gtGGdg~n-iS 92 (221)
.+++.+.+....+++.-+-.++-.++-. . .+.+++...+........+++. .. ...++=++|..|.|+. +.
T Consensus 144 ~~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 144 NSDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTL 223 (407)
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHH
Confidence 4578899999999999999998877654 2 2455555544333332222211 10 1226778898888874 11
Q ss_pred hhHHHHHHhCCCcEEeecCCCCCCCCcHHHH----HhcCCCCCC--CCCHHHHHHHHHh------hCceeecCCCcCChh
Q psy1330 93 IPLVPALAACGLKVPMVSGRGLDFSGGTLDK----LESIPGYQV--NCSTADLKAKLSE------VGCFIVGANKQLSPG 160 (221)
Q Consensus 93 t~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDv----Le~L~Gi~~--~~s~~~~~~~l~~------~g~~fl~a~~~~~P~ 160 (221)
.-.|..+...|.+|...... +.++|+.+- -+.+ |+++ ..+++++.+.++. ..++++..+ -.+|.
T Consensus 224 akLA~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~l-gvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA-Gr~~~ 299 (407)
T PRK12726 224 VKLGWQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKL-DVELIVATSPAELEEAVQYMTYVNCVDHILIDTV-GRNYL 299 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcC-CCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC-CCCcc
Confidence 11122334568888876655 456676543 3446 7665 4688888887764 355788776 55554
Q ss_pred h
Q psy1330 161 D 161 (221)
Q Consensus 161 ~ 161 (221)
+
T Consensus 300 d 300 (407)
T PRK12726 300 A 300 (407)
T ss_pred C
Confidence 3
No 39
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.29 E-value=6.5 Score=29.56 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHH--------hcCCCCHHHHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLT--------VTGTAEDSQIGAMLM 44 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~i--------l~g~~~~~Qi~AfL~ 44 (221)
.|-+||.|++++.+..+ ...++||+|.++|=.
T Consensus 59 ~gv~lskd~aRE~VyGMpy~eWka~~Q~eAspeq~aafe~ 98 (104)
T COG3492 59 QGVDLSKDQAREIVYGMPYAEWKAQHQSEASPEQKAAFEA 98 (104)
T ss_pred cCCCccHHHHHHHHhCCCHHHHHHhcCCCCCHHHHHHHHh
Confidence 36799999999998654 467899999999853
No 40
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=64.52 E-value=1.3e+02 Score=28.58 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=91.2
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHcc--C------CCHHH--HHHHHHHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNL----TVTGTAEDSQIGAMLMAMFIN--G------LTNEE--TIALTKSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~----il~g~~~~~Qi~AfL~alr~k--g------et~eE--l~g~~~am~~~~~ 68 (221)
.+...++++.....||++...++++. ++...++..-+-.|+--++-+ | .++.+ ..-+.+.+.+...
T Consensus 8 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~ 87 (429)
T TIGR01425 8 SITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVD 87 (429)
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhC
Confidence 46788899999999999987666654 668889998888888877643 2 23321 2234444444221
Q ss_pred ----CCCCCC-CCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHH----hcCCCCCCC-----
Q psy1330 69 ----TLSWRP-EDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKL----ESIPGYQVN----- 133 (221)
Q Consensus 69 ----~~~~~~-~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvL----e~L~Gi~~~----- 133 (221)
.+.+.. .+.++=++|-.|.|+. +..-.|..+...|.+|..-... +.+.|..+-| +.+ |+++.
T Consensus 88 ~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D--~~R~aA~eQLk~~a~~~-~vp~~~~~~~ 164 (429)
T TIGR01425 88 PGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD--TFRAGAFDQLKQNATKA-RIPFYGSYTE 164 (429)
T ss_pred CCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc--ccchhHHHHHHHHhhcc-CCeEEeecCC
Confidence 122221 1347889999999974 2222334455679999887765 3445655544 234 56532
Q ss_pred CCHHHH-HHH---HH--hhCceeecCCCcCChhh
Q psy1330 134 CSTADL-KAK---LS--EVGCFIVGANKQLSPGD 161 (221)
Q Consensus 134 ~s~~~~-~~~---l~--~~g~~fl~a~~~~~P~~ 161 (221)
.+|.++ .+. +. ...++|+..+ -.++..
T Consensus 165 ~dp~~i~~~~l~~~~~~~~DvViIDTa-Gr~~~d 197 (429)
T TIGR01425 165 SDPVKIASEGVEKFKKENFDIIIVDTS-GRHKQE 197 (429)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECC-CCCcch
Confidence 233222 122 22 3566788776 455444
No 41
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=64.02 E-value=34 Score=31.17 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=59.4
Q ss_pred HHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC----cch-------hhHHHHH
Q psy1330 38 QIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD----KVS-------IPLVPAL 99 (221)
Q Consensus 38 Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~----niS-------t~~a~vl 99 (221)
...++++|...+|++ .+++..+.++|++.+..+.+...+ .+-+.|.+.... .++ .+++.++
T Consensus 14 ~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~~-~~~I~~~~~~~~~~~~~~~~~~~t~~~~~~~l~ 92 (400)
T cd01555 14 ALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGEN-TLVIDASNINSTEAPYELVRKMRASILVLGPLL 92 (400)
T ss_pred HHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECCCC-EEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHh
Confidence 346677777778876 577999999999999887655312 344555322101 011 1333344
Q ss_pred Hh-CCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCC
Q psy1330 100 AA-CGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVN 133 (221)
Q Consensus 100 Aa-~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~ 133 (221)
+. .++.+..+|+..+.++. -+.+.|+++ |+++.
T Consensus 93 ~~~~~~~~~~~g~~~l~~rp~~~~~~~L~~l-G~~i~ 128 (400)
T cd01555 93 ARFGEARVSLPGGCAIGARPVDLHLKGLEAL-GAKIE 128 (400)
T ss_pred cCCCceEEEEcCCCccccCCHHHHHHHHHHC-CCEEE
Confidence 33 45788888976554433 357999999 99885
No 42
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=62.71 E-value=28 Score=29.26 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=26.2
Q ss_pred eccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 81 KHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 81 ~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+.|.||.|+. ++...+..+|..|.+|..-...
T Consensus 4 ~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d 36 (217)
T cd02035 4 FTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred EeCCCCchHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 5688888985 8888889999999999887644
No 43
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=62.02 E-value=1.3e+02 Score=27.76 Aligned_cols=124 Identities=8% Similarity=0.054 Sum_probs=69.8
Q ss_pred chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCC--CCCC------CCCHHHHHHHHHh------hCceeecCCCc
Q psy1330 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIP--GYQV------NCSTADLKAKLSE------VGCFIVGANKQ 156 (221)
Q Consensus 91 iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~--Gi~~------~~s~~~~~~~l~~------~g~~fl~a~~~ 156 (221)
+.+..+-.++.. +.+.|-|++.++. .++|+.+= |.++ ..+++++...++. .++.++.....
T Consensus 190 ~d~~~~~~l~~~-vd~lkI~s~~~~n----~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s 264 (360)
T PRK12595 190 VNPADVEVALDY-VDVIQIGARNMQN----FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR 264 (360)
T ss_pred CCHHHHHHHHHh-CCeEEECcccccC----HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC
Confidence 445556666777 8888888888766 35555440 3332 2366666655543 24556641112
Q ss_pred C-------ChhhhhhHHHhhhhC--CCCCchh------HHHHhhhhhhhcCCCeEEEe------eecCCCCCCCCHHHHH
Q psy1330 157 L-------SPGDQILYRVRDVTA--TVDNLSL------CSASILSKKVAEGTKYLVID------VKVGEASFFKTYEKAK 215 (221)
Q Consensus 157 ~-------~P~~~~l~~lR~~lg--Ti~~~~l------~~asilskk~~~g~~~~v~d------v~~g~~a~~~~~~~a~ 215 (221)
. ..-+..+..+|+..+ -+++... +++++----++.|||.++|- -+.-++++.=++++-+
T Consensus 265 ~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~ 344 (360)
T PRK12595 265 TYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFD 344 (360)
T ss_pred CCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHH
Confidence 2 234566677777565 2221111 23222223369999999994 4444566666777777
Q ss_pred HHHH
Q psy1330 216 EMAE 219 (221)
Q Consensus 216 ~la~ 219 (221)
+|.+
T Consensus 345 ~l~~ 348 (360)
T PRK12595 345 RFLD 348 (360)
T ss_pred HHHH
Confidence 7654
No 44
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=60.26 E-value=39 Score=28.75 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=52.0
Q ss_pred HHHHHHhCCCCC---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCC
Q psy1330 6 ELLRKKRSGNEL---SPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGE 68 (221)
Q Consensus 6 ~~i~k~~~g~~L---t~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~ 68 (221)
+++..+...++. ..++.+..++..+...++-..++.+.++-+.|..|+|+-..|++++++...
T Consensus 37 ~vl~~l~~~~~~~~~~~~~~~~~v~~~l~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv 102 (211)
T PRK15117 37 KTFDRLKNEQPKIRANPDYLRTIVDQELLPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLK 102 (211)
T ss_pred HHHHHHHhCHHhhccCHHHHHHHHHHHccccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 344444444332 678899999999999999999999999999999999999999999988754
No 45
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.62 E-value=1.7e+02 Score=27.96 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHc--cCC---CHHHHHH-HHHHHHhhCCCCC-CCCCCCceeeccCCCCCCc-ch
Q psy1330 21 EIAKFVNLTVTGTAEDSQIGAMLMAMFI--NGL---TNEETIA-LTKSMVDSGETLS-WRPEDIVVDKHSTGGVGDK-VS 92 (221)
Q Consensus 21 Ea~~~~~~il~g~~~~~Qi~AfL~alr~--kge---t~eEl~g-~~~am~~~~~~~~-~~~~~~~vD~~gtGGdg~n-iS 92 (221)
....+.+.+.+.++++.-+-.++-.+.- ... +.+++.. +.+.+........ ....+..+=++|.+|.|+. ..
T Consensus 179 ~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 179 IIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTL 258 (436)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHH
Confidence 3456788888999999888888876643 222 4445444 3334433322111 1111237789999999974 11
Q ss_pred hhHHHHHHhCCCcEEeecCCCCCCCCcHHHH----HhcCCCCCCC--CCHHHHHHHHHh------hCceeecCCCcCChh
Q psy1330 93 IPLVPALAACGLKVPMVSGRGLDFSGGTLDK----LESIPGYQVN--CSTADLKAKLSE------VGCFIVGANKQLSPG 160 (221)
Q Consensus 93 t~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDv----Le~L~Gi~~~--~s~~~~~~~l~~------~g~~fl~a~~~~~P~ 160 (221)
...|.-+...|.+|..--.. +.+.|+.+- -+.+ |+++. .+++++.+.++. ..++|+..+-..+-.
T Consensus 259 aKLA~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~l-gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 259 AKMAWQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTI-GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHHHHHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhc-CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcC
Confidence 11222334568888766544 344555433 3346 77753 588888888753 356788665233333
Q ss_pred hhhhHHHhhhhC
Q psy1330 161 DQILYRVRDVTA 172 (221)
Q Consensus 161 ~~~l~~lR~~lg 172 (221)
...+..+++.+.
T Consensus 336 ~~lm~EL~~~lk 347 (436)
T PRK11889 336 SETVEEMIETMG 347 (436)
T ss_pred HHHHHHHHHHHh
Confidence 334556665554
No 46
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=58.30 E-value=13 Score=25.64 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
++|.||..+.+-.+...-+++.|||..|
T Consensus 27 ~~~~~eVe~~I~klakkG~tpSqIG~iL 54 (60)
T PF08069_consen 27 KYSPEEVEELIVKLAKKGLTPSQIGVIL 54 (60)
T ss_dssp -S-HHHHHHHHHHHCCTTHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHhhhhh
Confidence 4789999999999999999999999887
No 47
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=58.14 E-value=18 Score=29.33 Aligned_cols=63 Identities=5% Similarity=0.023 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 5 IELLRKKRSGNEL---SPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 5 ~~~i~k~~~g~~L---t~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
.+++..+..++.. +.++.++.++.++...++-..++-+.++=+.+..|++|-..|+++++++.
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~v~~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l 71 (170)
T PF05494_consen 6 DDVLSILKDNKSKYKQDPEARRAKIEDIVDPYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLL 71 (170)
T ss_dssp HHHHHHHHT-HHHHTT-HHHHHHHHHHHTGGGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHH
Confidence 4455555555432 47899999999999999999999999999999999999999999998864
No 48
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=58.07 E-value=47 Score=31.64 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=60.4
Q ss_pred HHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC----------c---chhhHHHHHH
Q psy1330 41 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD----------K---VSIPLVPALA 100 (221)
Q Consensus 41 AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~----------n---iSt~~a~vlA 100 (221)
|++.+.-.+|+| .|......+|++..+.++++.. ..+.+.|+|| .. | ..=+...++|
T Consensus 29 alilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~-~~~~~~~~l~~GnSGTt~R~l~glla 105 (428)
T COG0128 29 ALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGG-ELKEPPAVLDCGNSGTTLRLLTGLLA 105 (428)
T ss_pred HHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCC-CcCCCCceeeeccchhHHHHHHHHHh
Confidence 555555667765 6889999999999998888754 3678899987 32 2 2223334444
Q ss_pred h-CCCcEEeecCCCCCCCC-c-HHHHHhcCCCCCCCC
Q psy1330 101 A-CGLKVPMVSGRGLDFSG-G-TLDKLESIPGYQVNC 134 (221)
Q Consensus 101 a-~Gv~V~kHG~r~~ts~~-G-saDvLe~L~Gi~~~~ 134 (221)
. .+-.+..+|...+..+- + -.|.|.++ |+++..
T Consensus 106 ~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~-Ga~i~~ 141 (428)
T COG0128 106 LGSPGETVLTGDESLRKRPMGPLVDALRQL-GAKIDG 141 (428)
T ss_pred cCCCCeEEEECChhhhhCCcHHHHHHHHHC-CcEEEe
Confidence 3 44779999988775442 3 34777777 776553
No 49
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=57.52 E-value=32 Score=31.68 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC----------CCcch-hhHHHHHHh
Q psy1330 40 GAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV----------GDKVS-IPLVPALAA 101 (221)
Q Consensus 40 ~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd----------g~niS-t~~a~vlAa 101 (221)
.+++.|.-.+|.| .+++....++|++.+..+++.... .+-+.|.+.. ....+ .++..+++.
T Consensus 27 r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~~-~~~i~g~~~~~~~~~~~~~~~s~~s~~~l~~~~~~ 105 (417)
T PRK09369 27 PILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGNG-TVTIDASNINNTEAPYELVKKMRASILVLGPLLAR 105 (417)
T ss_pred HHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCCC-EEEEECCCCCCCcCCHHHHhhhhhHHHHHHHHhcc
Confidence 5566666666655 789999999999999887654312 3334443321 11111 244444444
Q ss_pred C-CCcEEeecCCCCCCCCc--HHHHHhcCCCCCCC
Q psy1330 102 C-GLKVPMVSGRGLDFSGG--TLDKLESIPGYQVN 133 (221)
Q Consensus 102 ~-Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~ 133 (221)
. +.++..+|+....++.- ..+.|+++ |++++
T Consensus 106 ~~~~~~~~~g~~~l~~Rp~~~~~~~L~~l-Ga~v~ 139 (417)
T PRK09369 106 FGEAKVSLPGGCAIGARPVDLHLKGLEAL-GAEIE 139 (417)
T ss_pred CCceEEEecCCCccCCCchHHHHHHHHHC-CCEEE
Confidence 3 45899999777766543 45999999 99874
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=57.48 E-value=92 Score=31.35 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=46.9
Q ss_pred ceeecc-CCCCCCc-chhhHHHHHHhCCCcEEeecCCC----------CCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 78 VVDKHS-TGGVGDK-VSIPLVPALAACGLKVPMVSGRG----------LDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 78 ~vD~~g-tGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~----------~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
++=++| .||.|+. ++.-.|..+|..|.+|..-...- .++..|-.|+|..- .+++++...-..
T Consensus 528 vi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~------~~l~~~i~~~~~ 601 (719)
T PRK11519 528 VLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQ------GDITTAAKPTSI 601 (719)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCC------CCHHHhecccCc
Confidence 555566 6899986 88888999999999998865332 23344556665322 355555443344
Q ss_pred hCceeecCC
Q psy1330 146 VGCFIVGAN 154 (221)
Q Consensus 146 ~g~~fl~a~ 154 (221)
.|+.|+++.
T Consensus 602 ~~l~~lp~g 610 (719)
T PRK11519 602 ANFDLIPRG 610 (719)
T ss_pred CCEEEEeCC
Confidence 788899765
No 51
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.97 E-value=50 Score=28.29 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred HHHHHHhCC---CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCC
Q psy1330 6 ELLRKKRSG---NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGE 68 (221)
Q Consensus 6 ~~i~k~~~g---~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~ 68 (221)
+.+..+.++ ...+....+..++..+..-++-.-++.+.++=..|.-|+|+...|+++++++..
T Consensus 39 ~~ls~lk~~~~~~k~dp~~l~~~v~~~l~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~ 104 (202)
T COG2854 39 KVLSILKNNQAKIKQDPQYLRQIVDQELLPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLE 104 (202)
T ss_pred HHHHHHhccchhhccCHHHHHHHHHHHhhhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence 344444444 368999999999999999999999999999999999999999999999988753
No 52
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=55.38 E-value=44 Score=30.58 Aligned_cols=91 Identities=22% Similarity=0.307 Sum_probs=58.9
Q ss_pred HHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC-------c---chhhHHHHHHhCC
Q psy1330 41 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD-------K---VSIPLVPALAACG 103 (221)
Q Consensus 41 AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~-------n---iSt~~a~vlAa~G 103 (221)
++++|.-.+|+| .+++..+.+++++.+.++.+.. . .+-+.|.|+.-. + ..-+...+++.++
T Consensus 15 ~l~~a~la~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~-~-~~~i~g~~~~~~~~~i~~g~sgt~~r~l~~l~a~~~ 92 (409)
T TIGR01356 15 ALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGG-E-VAVIEGVGGKEPQAELDLGNSGTTARLLTGVLALAD 92 (409)
T ss_pred HHHHHHhCCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC-C-EEEEEccCCCCCCCEEEecCchHHHHHHHHHHHcCC
Confidence 344444456665 6899999999999998877553 2 233344443110 1 1223455666678
Q ss_pred CcEEeecCCCCCCC--CcHHHHHhcCCCCCCCC
Q psy1330 104 LKVPMVSGRGLDFS--GGTLDKLESIPGYQVNC 134 (221)
Q Consensus 104 v~V~kHG~r~~ts~--~GsaDvLe~L~Gi~~~~ 134 (221)
-++..+|...+.++ .-..+.|+.+ |+++..
T Consensus 93 ~~~~i~g~~~l~~rp~~~l~~~L~~l-Ga~v~~ 124 (409)
T TIGR01356 93 GEVVLTGDESLRKRPMGRLVDALRQL-GAEISS 124 (409)
T ss_pred CeEEEECCcccccCCcHHHHHHHHHC-CCEEEE
Confidence 89999998766433 3457999999 998753
No 53
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=54.83 E-value=44 Score=30.33 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC---------cchhhH---HH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD---------KVSIPL---VP 97 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~---------niSt~~---a~ 97 (221)
.+-+=++.++ .+|++ .+++..+.+++++.+.++.+... .+-+.|.++.+. +.++.+ ..
T Consensus 14 ~~r~l~~a~l-~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~~--~~~i~g~~~~~~~~~~~i~~~~s~~s~~~l~~ 90 (409)
T cd01556 14 SHRALLLAAL-AEGESRIENLLDSDDTLATLEALRALGAKIEEEGG--TVEIVGGGGLGLPPEAVLDCGNSGTTMRLLTG 90 (409)
T ss_pred HHHHHHHHHh-cCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecCC--EEEEEcCCCCCCCCCceEEcCCchHHHHHHHH
Confidence 3433344443 67766 68999999999999998876542 233444332221 111222 23
Q ss_pred HHHhCCCcEEeecCCCCCCC--CcHHHHHhcCCCCCCCCC
Q psy1330 98 ALAACGLKVPMVSGRGLDFS--GGTLDKLESIPGYQVNCS 135 (221)
Q Consensus 98 vlAa~Gv~V~kHG~r~~ts~--~GsaDvLe~L~Gi~~~~s 135 (221)
+++.++.++..+|...+.++ ....+.|+.+ |+++...
T Consensus 91 l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~l-Ga~i~~~ 129 (409)
T cd01556 91 LLALQGGDSVLTGDESLRKRPMGRLVDALRQL-GAEIEGR 129 (409)
T ss_pred HHHcCCCeEEEECCcccccCChHHHHHHHHHC-CCEEEeC
Confidence 33344668888886444332 4678999999 9988744
No 54
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=54.55 E-value=1.1e+02 Score=27.27 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=34.2
Q ss_pred ccCCCHHHHHH---HHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEe
Q psy1330 48 INGLTNEETIA---LTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPM 108 (221)
Q Consensus 48 ~kget~eEl~g---~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~k 108 (221)
+++.+++|..- +++++..+..++.... .|=++|..|-|+ |+++-.+...+|+++.-
T Consensus 105 l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~I~l~G~~GsGK--Stvg~~La~~Lg~~~id 163 (309)
T PRK08154 105 LEQASPAQLARVRDALSGMLGAGRRAARRR---RIALIGLRGAGK--STLGRMLAARLGVPFVE 163 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhhhhccCCC---EEEEECCCCCCH--HHHHHHHHHHcCCCEEe
Confidence 56667665544 4455555555544332 566677666664 66666666678998773
No 55
>KOG3220|consensus
Probab=54.54 E-value=22 Score=30.76 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=24.4
Q ss_pred EEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 106 VPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 106 V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
|...|+-+ |.||-.+.+++++ |+++- +.+.+.+.+=+
T Consensus 4 VGLTGgia-tGKStVs~~f~~~-G~~vI-DaD~vaR~vv~ 40 (225)
T KOG3220|consen 4 VGLTGGIA-TGKSTVSQVFKAL-GIPVI-DADVVAREVVE 40 (225)
T ss_pred EEeecccc-cChHHHHHHHHHc-CCcEe-cHHHHHHHHhc
Confidence 45566655 5677778999999 99865 55555544443
No 56
>PRK15491 replication factor A; Provisional
Probab=54.22 E-value=27 Score=32.50 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=38.6
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHcc
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTV--TGTAEDSQIGAMLMAMFIN 49 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il--~g~~~~~Qi~AfL~alr~k 49 (221)
|+.+.++-.++.. .+|+||..+.++... -|-+.+.+.||+|++..+.
T Consensus 1 ~~~i~~~~~~~~~--~is~ee~e~~v~ekie~~~gl~d~~~A~~lva~elg 49 (374)
T PRK15491 1 MDEIDTIYEKLEG--IISREDFEAKVDEKVEQMSGLCDVKTAALLVAHDLG 49 (374)
T ss_pred CchHHHHHHHHhc--cCCHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhcC
Confidence 8888888888875 699999999999854 3556677999999997766
No 57
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.11 E-value=1.9e+02 Score=27.06 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-----CCHHHHHH-HHHHHHhhCCCC-CCC--CCCCceeeccCCC
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING-----LTNEETIA-LTKSMVDSGETL-SWR--PEDIVVDKHSTGG 86 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg-----et~eEl~g-~~~am~~~~~~~-~~~--~~~~~vD~~gtGG 86 (221)
.++.+....+.+.+....+++.-.-.++--++-+. .+.+.+.. +.+.+.+..... ++. ..+.++=.+|..|
T Consensus 105 ~~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptG 184 (388)
T PRK12723 105 EINHPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTG 184 (388)
T ss_pred ccCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCC
Confidence 44566677777888888898877777776654331 12333222 222233322111 111 1133677899999
Q ss_pred CCCcchhhHHHHHHh-------CCCcEEeecCCCCCCCCcHHHH----HhcCCCCCCC--CCHHHHHHHHH---hhCcee
Q psy1330 87 VGDKVSIPLVPALAA-------CGLKVPMVSGRGLDFSGGTLDK----LESIPGYQVN--CSTADLKAKLS---EVGCFI 150 (221)
Q Consensus 87 dg~niSt~~a~vlAa-------~Gv~V~kHG~r~~ts~~GsaDv----Le~L~Gi~~~--~s~~~~~~~l~---~~g~~f 150 (221)
.|+. |+++.+++. .|.+|..-... +.+.|+.+- .+.+ |+++. .+++++.+.++ +..+.+
T Consensus 185 vGKT--TT~aKLA~~~~~~~~~~g~~V~lit~D--t~R~aa~eQL~~~a~~l-gvpv~~~~~~~~l~~~L~~~~~~DlVL 259 (388)
T PRK12723 185 VGKT--TTIAKLAAIYGINSDDKSLNIKIITID--NYRIGAKKQIQTYGDIM-GIPVKAIESFKDLKEEITQSKDFDLVL 259 (388)
T ss_pred CCHH--HHHHHHHHHHHhhhccCCCeEEEEecc--CccHHHHHHHHHHhhcC-CcceEeeCcHHHHHHHHHHhCCCCEEE
Confidence 9963 344444432 37788876555 346666543 4447 77754 46667766554 455677
Q ss_pred ecCCCcCChhh-hhhHHHhhhhC
Q psy1330 151 VGANKQLSPGD-QILYRVRDVTA 172 (221)
Q Consensus 151 l~a~~~~~P~~-~~l~~lR~~lg 172 (221)
+..+ ..+|.. .++..+++.+.
T Consensus 260 IDTa-Gr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 260 VDTI-GKSPKDFMKLAEMKELLN 281 (388)
T ss_pred EcCC-CCCccCHHHHHHHHHHHH
Confidence 8776 566532 24555555544
No 58
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=51.87 E-value=70 Score=29.25 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc----c------h-hhHHHHH
Q psy1330 38 QIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK----V------S-IPLVPAL 99 (221)
Q Consensus 38 Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n----i------S-t~~a~vl 99 (221)
+..+++++....|.+ .+++....++|++.+..+++.. . .+-+.|.+..... + + .+++.++
T Consensus 25 ~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~-~-~~~i~g~~~~~~~~~~~~s~~~ra~~~~~~~~l 102 (416)
T TIGR01072 25 ALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN-N-TLEINTPNINSTEAPYELVRKMRASILVLGPLL 102 (416)
T ss_pred HHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC-C-EEEEECCCCCCCCCCHHHHhhhhHHHHHHHHHh
Confidence 345566665556644 6779999999999998887653 2 3445554421111 1 1 1222334
Q ss_pred Hh-CCCcEEeecCCCCCCCCc--HHHHHhcCCCCCCC
Q psy1330 100 AA-CGLKVPMVSGRGLDFSGG--TLDKLESIPGYQVN 133 (221)
Q Consensus 100 Aa-~Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~ 133 (221)
+. .++++..+|+..+.++.. ..++|+++ |++++
T Consensus 103 a~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~-G~~v~ 138 (416)
T TIGR01072 103 ARFGKAVVSLPGGCAIGARPVDLHLKGLKAL-GAEIV 138 (416)
T ss_pred ccCCceEEEecCCCccCCCCHHHHHHHHHHC-CCEEE
Confidence 43 256888888766655543 56999999 99874
No 59
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=51.44 E-value=68 Score=26.26 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=22.9
Q ss_pred ceeeccC-CCCCCc-chhhHHHHHHhCCCcEEe
Q psy1330 78 VVDKHST-GGVGDK-VSIPLVPALAACGLKVPM 108 (221)
Q Consensus 78 ~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~k 108 (221)
+|=++|. ||.|+- ++...|..+|..|.+|..
T Consensus 19 vI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 19 VLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4555544 677875 677778888999999986
No 60
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.16 E-value=1.5e+02 Score=25.11 Aligned_cols=179 Identities=12% Similarity=-0.001 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHc------cCC-CHHHHHHHHHHHHhhCCCC-------C-CCCCCCce
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQI--GAMLMAMFI------NGL-TNEETIALTKSMVDSGETL-------S-WRPEDIVV 79 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi--~AfL~alr~------kge-t~eEl~g~~~am~~~~~~~-------~-~~~~~~~v 79 (221)
.+.+++.+.++..++...++.++ -.+.-+|+. +|+ +..+.-..+++|++....+ + .+...+.+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~ii~~~l~p~m~~vG~~w~~gei~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~v 91 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEIINGPLMDGMKVVGDLFGAGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKI 91 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeE
Confidence 47888888998888766566554 444444433 333 4444445555555432111 1 10011233
Q ss_pred eeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCC---
Q psy1330 80 DKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANK--- 155 (221)
Q Consensus 80 D~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~--- 155 (221)
=+...+||... =-..++.++...|+.|.--|. +.+++++.+.+.+.+.-++..+-
T Consensus 92 vl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---------------------~vp~e~~v~~~~~~~~~~V~lS~~~~ 150 (213)
T cd02069 92 VLATVKGDVHDIGKNLVGVILSNNGYEVIDLGV---------------------MVPIEKILEAAKEHKADIIGLSGLLV 150 (213)
T ss_pred EEEeCCCchhHHHHHHHHHHHHhCCCEEEECCC---------------------CCCHHHHHHHHHHcCCCEEEEccchh
Confidence 34445677553 346778888899999985442 45788888888887776554432
Q ss_pred cCChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 156 QLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 156 ~~~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
...|.++.+...-++.| ......+=.+..+.+.+.- .-+=-.+|...+.+|..+|-++|+.
T Consensus 151 ~~~~~~~~~i~~L~~~~-~~~~i~vGG~~~~~~~~~~---~~~~~~~gad~y~~da~~~v~~~~~ 211 (213)
T cd02069 151 PSLDEMVEVAEEMNRRG-IKIPLLIGGAATSRKHTAV---KIAPEYDGPVVYVKDASRALGVANK 211 (213)
T ss_pred ccHHHHHHHHHHHHhcC-CCCeEEEEChhcCHHHHhh---hhccccCCCceEecCHHHHHHHHHH
Confidence 23344444333223334 3333445556677766631 0000123555567788888888764
No 61
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.88 E-value=1.7e+02 Score=25.67 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=24.3
Q ss_pred CceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 77 IVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 77 ~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
.++=++|.+|.|+. +..-.|..++..|.+|..-...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 37778899999974 2333334456678888877654
No 62
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=48.28 E-value=36 Score=31.67 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeec-CCCC
Q psy1330 50 GLTNEETIALTKSMVDSGETLSWRPEDIVVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVS-GRGL 114 (221)
Q Consensus 50 get~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG-~r~~ 114 (221)
+-|.+|+..+.+.+.+...+-+-.. ..+|=+++. ||.|+- ++...|..+|..|++|+.-= ....
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~-~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ 147 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKN-PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ 147 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCC-ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 5799999998887764322211111 124444444 899986 66777888999999999875 3443
No 63
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.20 E-value=2e+02 Score=25.78 Aligned_cols=178 Identities=18% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHH-H
Q psy1330 19 PGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLV-P 97 (221)
Q Consensus 19 ~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a-~ 97 (221)
.|-++.+=+.+-++-+-|+-|+ .+=.--.-|++.||+..+++.= .....+..+ +--.+..|..|. .+.++. +
T Consensus 45 ~ema~~ve~iiR~~GavpAtIa-ii~G~i~iGLs~eelE~la~~~----~a~KvsrrD-l~~vvA~~~~ga-TTVAaTMi 117 (310)
T COG2313 45 VEMAREVEEIIRDQGAVPATIA-IIGGKIKIGLSKEELELLAREG----NAMKVSRRD-LPFVVAEGKNGA-TTVAATMI 117 (310)
T ss_pred HHHHHHHHHHHHhcCCcceeEE-EeccEEEeecCHHHHHHHhhcC----ccceeeccc-hHHHHhcCcCCc-chHHHHHH
Confidence 3445555455555555554443 2333333478999988776421 111112111 000122222222 222222 5
Q ss_pred HHHhCCCcEEeecCCCCCCCC------cHHHHHhcC--------CCCCCCCCHHHHHHHHHhhCceee-cCCCcCChhhh
Q psy1330 98 ALAACGLKVPMVSGRGLDFSG------GTLDKLESI--------PGYQVNCSTADLKAKLSEVGCFIV-GANKQLSPGDQ 162 (221)
Q Consensus 98 vlAa~Gv~V~kHG~r~~ts~~------GsaDvLe~L--------~Gi~~~~s~~~~~~~l~~~g~~fl-~a~~~~~P~~~ 162 (221)
+.+.+|++|.-.|+-+=-++. =|+|+.|-- -|++.-++.....+.|+..|+-.+ +++ +-.|++.
T Consensus 118 ~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t-~~fPaF~ 196 (310)
T COG2313 118 LAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQT-NEFPAFF 196 (310)
T ss_pred HHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCC-Ccccchh
Confidence 556689999999977643333 156765532 166666788888999999999666 666 5677763
Q ss_pred h-hHHHhhhhCCCCCchhHHHHhhhhhhhcCCCe-EEEeeecCCCC
Q psy1330 163 I-LYRVRDVTATVDNLSLCSASILSKKVAEGTKY-LVIDVKVGEAS 206 (221)
Q Consensus 163 ~-l~~lR~~lgTi~~~~l~~asilskk~~~g~~~-~v~dv~~g~~a 206 (221)
. =.+.|..| +++++..++- ++--|...|.+. +++--|+=.-.
T Consensus 197 sR~Sg~~~pl-~l~~pe~ia~-~~~t~~~lglegg~lVaNPvPee~ 240 (310)
T COG2313 197 SRESGFRVPL-RLESPEEIAR-ILATKWQLGLEGGLLVANPVPEEF 240 (310)
T ss_pred cccCCCcCcc-ccCCHHHHHH-HHHHHHHhCCCCceEEecCCchhc
Confidence 2 23333333 3666655544 554455557764 44455554433
No 64
>PRK14974 cell division protein FtsY; Provisional
Probab=46.48 E-value=2.3e+02 Score=25.89 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred CCHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHcc--------CCCHHH--HHHHHHHHHhhCCCCC---C------C
Q psy1330 17 LSPGEI----AKFVNLTVTGTAEDSQIGAMLMAMFIN--------GLTNEE--TIALTKSMVDSGETLS---W------R 73 (221)
Q Consensus 17 Lt~eEa----~~~~~~il~g~~~~~Qi~AfL~alr~k--------get~eE--l~g~~~am~~~~~~~~---~------~ 73 (221)
++.++. .++...+++..+++.-.-.++-.++-+ +.+.++ ...+.+.+.+.....+ . .
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 137 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSK 137 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhcc
Confidence 555444 444555778888887777777776544 234343 2334445544322211 1 1
Q ss_pred CCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHH----HHhcCCCCCC
Q psy1330 74 PEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLD----KLESIPGYQV 132 (221)
Q Consensus 74 ~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaD----vLe~L~Gi~~ 132 (221)
..+.++=++|..|.|+. +.--.|..+...|.+|+..... +.+.|+.+ ..+.+ |+++
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D--t~R~~a~eqL~~~a~~l-gv~v 198 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD--TFRAGAIEQLEEHAERL-GVKV 198 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC--cCcHHHHHHHHHHHHHc-CCce
Confidence 11237888999999974 1222334456679999886654 34556643 34556 7765
No 65
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=46.27 E-value=1.3e+02 Score=28.48 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=72.6
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCC--------CCCCceeeccCCCCCCcchh
Q psy1330 23 AKFVNLTVTG-TAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWR--------PEDIVVDKHSTGGVGDKVSI 93 (221)
Q Consensus 23 ~~~~~~il~g-~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~--------~~~~~vD~~gtGGdg~niSt 93 (221)
.++++...+| +.|..|+..|+-.+--...++.++++|.-|++-.+...+-- .....+||..+
T Consensus 2 ~~~i~kk~~g~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~--------- 72 (405)
T TIGR02644 2 VDIIRKKRDGKKLSDEEINFFINGYTNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSL--------- 72 (405)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCccc---------
Confidence 4566777766 47888888777665555557889999999999888764310 00012443321
Q ss_pred hHHHHHHhCCCcEEeecCCCCCCCCcH--HHHHhcCCCCCCC-------CCHHHHHHHHHhhC-ce
Q psy1330 94 PLVPALAACGLKVPMVSGRGLDFSGGT--LDKLESIPGYQVN-------CSTADLKAKLSEVG-CF 149 (221)
Q Consensus 94 ~~a~vlAa~Gv~V~kHG~r~~ts~~Gs--aDvLe~L~Gi~~~-------~s~~~~~~~l~~~g-~~ 149 (221)
.|..|-|||.-+...+.-+ +=++.++ |+++. .+..-..+.|+..+ |-
T Consensus 73 --------~~~~vD~~gTGGdG~~iSt~~a~ivAa~-Gv~VaKhgnR~lss~~GTaD~LE~lgG~~ 129 (405)
T TIGR02644 73 --------PGPKVDKHSTGGVGDKVSLVLGPIVAAC-GVKVAKMSGRGLGHTGGTIDKLESIPGFR 129 (405)
T ss_pred --------CCCeeEEeCCCCCCCCchHHHHHHHHhC-CCCEEeeCCCCCCCcchHHHHHHhcCCCC
Confidence 2457899998777766543 4789999 99864 23456788888876 54
No 66
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=46.20 E-value=34 Score=23.37 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=42.9
Q ss_pred CcHHHHHhcCCCCC--CCCCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhhCCCCCchhHHHHhhh
Q psy1330 118 GGTLDKLESIPGYQ--VNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILS 186 (221)
Q Consensus 118 ~GsaDvLe~L~Gi~--~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lgTi~~~~l~~asils 186 (221)
.+..++++.| +.+ -.++.+++.+.+++.|---+..+ .--|. +..+-+++...+.+.|+++.++|
T Consensus 4 ~~~~~v~~~l-~t~~~~GLs~~ev~~r~~~~G~N~l~~~-~~~s~---~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 4 LSVEEVLKRL-NTSSSQGLSSEEVEERRKKYGPNELPEP-KKKSL---WRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp SSHHHHHHHH-TTBTSSBBTHHHHHHHHHHHSSSSTTTT-TSSSH---HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-CcCCCCCCCHHHHHHHHHhccccccccc-ccCcH---HHHHHHHHHhHHHHHHHHHHHHC
Confidence 3456788888 643 45799999999999988666443 22222 33344445456677888888876
No 67
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=45.68 E-value=55 Score=30.04 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=57.6
Q ss_pred HHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC--------CCCC--cchh-hHHHHH
Q psy1330 38 QIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTG--------GVGD--KVSI-PLVPAL 99 (221)
Q Consensus 38 Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG--------Gdg~--niSt-~~a~vl 99 (221)
+.++++.|...+|.| .+++....++++..+..+++.. . .+-+.|++ ++.. +-|+ +++.++
T Consensus 25 ~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~~-~-~~~I~g~~~~~~~~~~~~~~~~~as~~~~~~~~ 102 (417)
T PRK12830 25 AVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRDG-D-TLEIDPTGIQSMPLPNGKVKSLRASYYFMGALL 102 (417)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEcC-C-EEEEECCCCCCCCCCHHHHhhchhHHHHHHHHh
Confidence 455666666667765 6788889999999998876532 2 33344532 1111 1112 334444
Q ss_pred HhCC-CcEEeecCCCCCCCCc--HHHHHhcCCCCCCC
Q psy1330 100 AACG-LKVPMVSGRGLDFSGG--TLDKLESIPGYQVN 133 (221)
Q Consensus 100 Aa~G-v~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~ 133 (221)
+..| .+|...|......+.= ..+.|+++ |++++
T Consensus 103 ~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~l-Ga~v~ 138 (417)
T PRK12830 103 GRFKKAVVGLPGGCDLGPRPIDQHIKGFEAL-GAEVT 138 (417)
T ss_pred cCCCceEEEecCCCccCCCcCHHHHHHHHHC-CCEEE
Confidence 4433 4888888777655432 45889999 99874
No 68
>KOG0781|consensus
Probab=45.53 E-value=80 Score=30.89 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCCH-------HHHHHHHHHHHccCCC--H-HHHHHHHHHHHhhCCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVT----GTAED-------SQIGAMLMAMFINGLT--N-EETIALTKSMVDSGET 69 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~----g~~~~-------~Qi~AfL~alr~kget--~-eEl~g~~~am~~~~~~ 69 (221)
+.-+++.+..++.|++++...+++.+.+ .++.+ .++.+=|..=.+.--| . +-=.++.+++.+-..|
T Consensus 280 aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP 359 (587)
T KOG0781|consen 280 AFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTP 359 (587)
T ss_pred HHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 4567888888899999999888876543 33322 2344444443333333 1 1123455555544322
Q ss_pred ---CCC---------CCCCCceeeccCCCCCCcchhh-HHHHHHhCCCcEEeecCCCCCCCCcHH
Q psy1330 70 ---LSW---------RPEDIVVDKHSTGGVGDKVSIP-LVPALAACGLKVPMVSGRGLDFSGGTL 121 (221)
Q Consensus 70 ---~~~---------~~~~~~vD~~gtGGdg~niSt~-~a~vlAa~Gv~V~kHG~r~~ts~~Gsa 121 (221)
++. ...|=+|-+||..|.|+.+.++ .|++|-..+++|..-+.. |.++|..
T Consensus 360 ~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACD--TFRsGAv 422 (587)
T KOG0781|consen 360 QRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACD--TFRSGAV 422 (587)
T ss_pred CchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEecc--chhhhHH
Confidence 221 0112278999999999964443 579999999999988876 5788853
No 69
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=44.84 E-value=40 Score=24.57 Aligned_cols=39 Identities=8% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 4 IIELLRKKRS--GNELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 4 ~~~~i~k~~~--g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
.+++|+++.. ++++|.+.-.+++..|.++.+ |..+..++
T Consensus 33 vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~ 73 (79)
T PF14069_consen 33 VRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLM 73 (79)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHH
Confidence 4566666654 688888888888888888877 66666554
No 70
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.53 E-value=61 Score=24.33 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=40.9
Q ss_pred chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC-------CH---HHHHHHHHhhCceeec
Q psy1330 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC-------ST---ADLKAKLSEVGCFIVG 152 (221)
Q Consensus 91 iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~-------s~---~~~~~~l~~~g~~fl~ 152 (221)
-....+-.+...|++|. ++.||++.|+.. |+++.. +. ..+.+.+++..+-|+-
T Consensus 14 ~~~~~a~~l~~~G~~i~--------aT~gTa~~L~~~-gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVI 76 (116)
T cd01423 14 ELLPTAQKLSKLGYKLY--------ATEGTADFLLEN-GIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVI 76 (116)
T ss_pred hHHHHHHHHHHCCCEEE--------EccHHHHHHHHc-CCCceEeeeccCCCCCCchhHHHHHHcCCceEEE
Confidence 56677778889999997 467999999999 997542 11 5688888888888773
No 71
>PRK07394 hypothetical protein; Provisional
Probab=44.32 E-value=75 Score=29.16 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=59.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHH--HHHHHHHHHHhh-------CCCCCCCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNE--ETIALTKSMVDS-------GETLSWRP 74 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~e--El~g~~~am~~~-------~~~~~~~~ 74 (221)
..++.+.+.+|+ .|..|.-.++-.+--..-|+.++++|.-++|-+-...+ +-.. .+... ...++|+.
T Consensus 27 a~~~~~~il~g~-~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~~~~~~~---~~d~~GtggDG~~~t~NiSt 102 (342)
T PRK07394 27 AADALKLMLLGE-ATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQSPSNQR---PPIVFGMPYDGRSRTAPIYP 102 (342)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCCCCCCCC---ceeEEeCCCCCCCCCcccHH
Confidence 456666666664 47778888877776566699999999999996432211 1000 11111 11233320
Q ss_pred -------CCC-ceeeccCCCCCCcchhhHHHHHHhCCCcEEe
Q psy1330 75 -------EDI-VVDKHSTGGVGDKVSIPLVPALAACGLKVPM 108 (221)
Q Consensus 75 -------~~~-~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~k 108 (221)
..+ .|=+||.-+...+.-..++=++.++|+++..
T Consensus 103 ~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~ 144 (342)
T PRK07394 103 LTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTG 144 (342)
T ss_pred HHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCC
Confidence 011 3556765444334334578999999999875
No 72
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=44.15 E-value=31 Score=20.40 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1330 20 GEIAKFVNLTVTGTAEDSQIGAMLMAM 46 (221)
Q Consensus 20 eEa~~~~~~il~g~~~~~Qi~AfL~al 46 (221)
+++++.+..+++|++++.+...|-.-+
T Consensus 2 ~~~~~~l~~y~dg~L~~~~~~~~~~HL 28 (36)
T PF13490_consen 2 EEVRELLSAYLDGELSPEERARLEAHL 28 (36)
T ss_dssp ---HHHHHHHHCT-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467889999999999999888775543
No 73
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=43.46 E-value=79 Score=29.98 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=76.9
Q ss_pred chhhHHHHHHhCCCcEEeecCCCCCCCCcH--HHHHhcCCCCCC--CCCHHHHHHHHHhhCceeecCCCcCChhhhhhHH
Q psy1330 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGT--LDKLESIPGYQV--NCSTADLKAKLSEVGCFIVGANKQLSPGDQILYR 166 (221)
Q Consensus 91 iSt~~a~vlAa~Gv~V~kHG~r~~ts~~Gs--aDvLe~L~Gi~~--~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~ 166 (221)
+..-.+..+...|++++-..+..-....+. +|-.-.+|+.+. -++.+.+.+..++.++-.++..-.|.+....+..
T Consensus 13 ia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~ 92 (472)
T PRK07178 13 IAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAE 92 (472)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHH
Confidence 455556667778998887776654433343 443223321122 2467788888888888766543124444445666
Q ss_pred HhhhhC-CCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCC--CCCHHHHHHHHHh
Q psy1330 167 VRDVTA-TVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASF--FKTYEKAKEMAEL 220 (221)
Q Consensus 167 lR~~lg-Ti~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~--~~~~~~a~~la~~ 220 (221)
+...+| ++...+.-+.+++..|..+-.-..=.+||+=++.. +.+.+++.+.++.
T Consensus 93 ~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~ 149 (472)
T PRK07178 93 ICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAER 149 (472)
T ss_pred HHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHH
Confidence 667777 22233333444555555555545556788877764 7888888877653
No 74
>PHA02909 hypothetical protein; Provisional
Probab=43.00 E-value=16 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred hhhhhcCCCeEEEeeecCCCCCC
Q psy1330 186 SKKVAEGTKYLVIDVKVGEASFF 208 (221)
Q Consensus 186 skk~~~g~~~~v~dv~~g~~a~~ 208 (221)
|||..-...++.+.|.+|+|-|+
T Consensus 3 skkqnpdpnylmlsvdygngkkv 25 (72)
T PHA02909 3 SKKQNPDPNYLMLSVDYGNGKKV 25 (72)
T ss_pred ccccCcCCCeEEEEEecCCCeEE
Confidence 78888899999999999999875
No 75
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.01 E-value=3.1e+02 Score=26.02 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=66.8
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHc--cC------CCH-HHHHH-HHHHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFV----NLTVTGTAEDSQIGAMLMAMFI--NG------LTN-EETIA-LTKSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~----~~il~g~~~~~Qi~AfL~alr~--kg------et~-eEl~g-~~~am~~~~~ 68 (221)
.+...++++.....+|.++..+++ ..+++..++..-+-.|+-.++- .| .++ +.+.. +.+.+.+...
T Consensus 7 ~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~ 86 (428)
T TIGR00959 7 RLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILG 86 (428)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhC
Confidence 467888999888899997665555 4577899999888888888864 33 233 22322 2233333221
Q ss_pred ----CCCCCC-CCCceeeccCCCCCCc-chhhHHHHHH-hCCCcEEeecCCC
Q psy1330 69 ----TLSWRP-EDIVVDKHSTGGVGDK-VSIPLVPALA-ACGLKVPMVSGRG 113 (221)
Q Consensus 69 ----~~~~~~-~~~~vD~~gtGGdg~n-iSt~~a~vlA-a~Gv~V~kHG~r~ 113 (221)
.+.... .+.++=++|..|.|+. +..-.|..+. ..|.+|..-...-
T Consensus 87 ~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 87 GENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 122221 1336788999999974 2222222233 4688888776553
No 76
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=41.64 E-value=1e+02 Score=22.84 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=44.6
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
+...++..+....-+|.||+.. +-.+.-+..++=++|-..+.||++..+. |...+++.
T Consensus 16 ~v~plLD~Ll~n~~it~E~y~~----V~a~~T~qdkmRkLld~v~akG~~~k~~--F~~iL~e~ 73 (85)
T cd08324 16 NTQCLVDNLLKNDYFSTEDAEI----VCACPTQPDKVRKILDLVQSKGEEVSEY--FLYLLQQL 73 (85)
T ss_pred hhHHHHHHHhccCCccHHHHHH----HHhCCCCHHHHHHHHHHHHhcCchHHHH--HHHHHHHH
Confidence 4456677777788999998754 5568889999999999999999987664 45555543
No 77
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=41.40 E-value=45 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI 48 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~ 48 (221)
.+..|-.+++..+-.-.+|+.|+++||-.++-
T Consensus 31 k~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 31 KTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 46677777777777777777777777776653
No 78
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=41.25 E-value=3e+02 Score=29.23 Aligned_cols=121 Identities=14% Similarity=-0.038 Sum_probs=58.2
Q ss_pred hhhHHHHHHhCCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhh
Q psy1330 92 SIPLVPALAACGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRD 169 (221)
Q Consensus 92 St~~a~vlAa~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~ 169 (221)
+..++..+...|+.+..-.+..-+... -.+|.+ +--..+.+.+.+.+++.++..+... .=....-.+.....
T Consensus 578 ~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~-----y~ep~~~e~vl~I~~~e~~dgVI~~-~g~~~~~~la~~le 651 (1068)
T PRK12815 578 SVHAAFALKKEGYETIMINNNPETVSTDYDTADRL-----YFEPLTLEDVLNVAEAENIKGVIVQ-FGGQTAINLAKGLE 651 (1068)
T ss_pred HHHHHHHHHHcCCEEEEEeCCccccccccccCceE-----EEccCCHHHHHHHHhhcCCCEEEEe-cCcHHHHHHHHHHH
Confidence 455677888899998877755432111 123422 2224468888888888887655322 11111223333334
Q ss_pred hhC-CCC-CchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 170 VTA-TVD-NLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 170 ~lg-Ti~-~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
.+| .+. +-+-.+..+..|..- -.-..=++||+=+...+.+.+++.+.++
T Consensus 652 ~~Gi~ilG~s~e~i~~~~DK~~f-~~ll~~~GIp~P~~~~~~s~ee~~~~~~ 702 (1068)
T PRK12815 652 EAGLTILGTSPDTIDRLEDRDRF-YQLLDELGLPHVPGLTATDEEEAFAFAK 702 (1068)
T ss_pred HCCCeEECCcHHHHHHHcCHHHH-HHHHHHcCcCCCCeEEeCCHHHHHHHHH
Confidence 445 111 112222222222211 1111114555555556666666665554
No 79
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=41.18 E-value=50 Score=30.71 Aligned_cols=60 Identities=27% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 50 GLTNEETIALTKSMVDSGETLSWRPEDIVVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 50 get~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
|-|.+|+..+.+.+.....+-+ .....+|=+++. ||.|+- ++.-.|..+|..|.+|..-=
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~~-~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRAE-DVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CcCHHHHHHHHHhhcccccccC-CCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 7899999988877765332211 111124555544 888985 67777888899999999875
No 80
>PRK14699 replication factor A; Provisional
Probab=40.78 E-value=49 Score=31.96 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=40.8
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHccCC
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTV--TGTAEDSQIGAMLMAMFINGL 51 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il--~g~~~~~Qi~AfL~alr~kge 51 (221)
|+.|.++..++.. ++|+||..+.++... -|-+.+.+.+++|+|.-+..+
T Consensus 1 m~~i~~~~~~l~~--~is~eef~~~v~~kie~~ggl~de~~a~mlva~e~~~~ 51 (484)
T PRK14699 1 MTDIETIYKKLSH--VISKEDFLQRIQEKVENMGGLCDEPMAAMLVANELGFS 51 (484)
T ss_pred CchHHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCcChHHHHhhhhHhhCCC
Confidence 8899998888875 899999999998876 467888999999999665544
No 81
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=39.33 E-value=1.2e+02 Score=28.12 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=54.8
Q ss_pred HHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCC------------------CCCcchhhHH
Q psy1330 42 MLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGG------------------VGDKVSIPLV 96 (221)
Q Consensus 42 fL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGG------------------dg~niSt~~a 96 (221)
++++.-.+|++ .+++..+.+++++.+..+.|......+.+.|.|+ .|...-++.+
T Consensus 29 l~~a~la~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~g~sgt~~r~l~~ 108 (443)
T PLN02338 29 LLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTA 108 (443)
T ss_pred HHHHHhCCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCcCCcccccccceEEcCCcchHHHHHHH
Confidence 44444456665 6899999999999998877642111233333322 1111223333
Q ss_pred HHHHh-CCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCC
Q psy1330 97 PALAA-CGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVN 133 (221)
Q Consensus 97 ~vlAa-~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~ 133 (221)
++++. ...++..+|...+.++. --.+.|+++ |+++.
T Consensus 109 ~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~l-Ga~i~ 147 (443)
T PLN02338 109 AVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQL-GADVE 147 (443)
T ss_pred HHHhCCCCceEEEECChhhccCCchHHHHHHHHC-CCEEE
Confidence 33332 23688889988765553 346999999 99985
No 82
>TIGR02225 recomb_XerD tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK.
Probab=39.06 E-value=57 Score=27.22 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~ 61 (221)
+.||.+|...+++.+......+....+++..+..-|.-..|+.++.-
T Consensus 103 ~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~l~~~tG~R~~E~~~L~~ 149 (291)
T TIGR02225 103 KVLTVEEVEALLAAPDVDTPLGLRDRAMLELLYATGLRVSELVGLRL 149 (291)
T ss_pred ccCCHHHHHHHHHhcccCCchhHHHHHHHHHHHHhCCCHHHHHcCcH
Confidence 45999999999998876555555667777777889999999988653
No 83
>PRK10236 hypothetical protein; Provisional
Probab=38.90 E-value=81 Score=27.70 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHccCCCHHHHHH-----HHHHHHhhC------
Q psy1330 6 ELLRKKRSG--NELSPGEIAKFVNLTVTG-----TAEDSQIGAMLMAMFINGLTNEETIA-----LTKSMVDSG------ 67 (221)
Q Consensus 6 ~~i~k~~~g--~~Lt~eEa~~~~~~il~g-----~~~~~Qi~AfL~alr~kget~eEl~g-----~~~am~~~~------ 67 (221)
+++.|+.+. +.|+.+|-+++...+-.. +..+..+.+++.+.+..|--...++. .++++..++
T Consensus 116 ~il~kll~~a~~kms~eE~~~L~~~l~~~l~~~~~~~~~ll~~~~~~~~~~gf~~y~l~~iv~~~i~~~~lG~gL~r~~~ 195 (237)
T PRK10236 116 QLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAG 195 (237)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHhhhccCcccchHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 344444444 678999999999888643 34577888999999988865555554 333333332
Q ss_pred --CCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhC
Q psy1330 68 --ETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAAC 102 (221)
Q Consensus 68 --~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~ 102 (221)
-++-|- ..++.|+.|..+ .++.++++.+|-.
T Consensus 196 l~GPIGw~-itg~wdlagpAy---RVTIPaviqIA~L 228 (237)
T PRK10236 196 LGGPVGAA-LNGVKAVSGSAY---RVTIPAVLQIACL 228 (237)
T ss_pred ccCchhHH-hhhhHHhcCCee---eeecchHHHHHHH
Confidence 233332 233445544333 5777777777754
No 84
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=38.78 E-value=4e+02 Score=28.86 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=58.5
Q ss_pred hhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhhC
Q psy1330 93 IPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTA 172 (221)
Q Consensus 93 t~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lg 172 (221)
-+++.++...|+.|.--| . +.+++++.+..++.+.-++..+--..+.+..+..+-++|.
T Consensus 750 nIV~~~L~~~GfeVIdLG-------------------~--dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~ 808 (1178)
T TIGR02082 750 NIVGVVLSCNGYEVVDLG-------------------V--MVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMN 808 (1178)
T ss_pred HHHHHHHHhCCCEEEECC-------------------C--CCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHH
Confidence 467788888999988433 3 4578899999998888776555334555555544443333
Q ss_pred --CCCCchhHHHHhhhhhhhcCCCeEEEe-eecCCCCCCCCHHHHHHHHH
Q psy1330 173 --TVDNLSLCSASILSKKVAEGTKYLVID-VKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 173 --Ti~~~~l~~asilskk~~~g~~~~v~d-v~~g~~a~~~~~~~a~~la~ 219 (221)
-+.-...+=+..+|++.+.- -|. ...|.....+|..+|-++|+
T Consensus 809 ~~g~~v~v~vGGa~~s~~~~~~----~i~~~~~gad~y~~dA~~av~~~~ 854 (1178)
T TIGR02082 809 RRGITIPLLIGGAATSKTHTAV----KIAPIYKGPVVYVLDASRAVTVMD 854 (1178)
T ss_pred hcCCCceEEEeccccchhHHHh----hhhhhccCCeEEecCHHHHHHHHH
Confidence 13333445566777766631 000 00144444555555555554
No 85
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.16 E-value=1.6e+02 Score=24.90 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=50.2
Q ss_pred CHHHHHHHHH---hhCceeecCCCcCChhhhhhHHHhhhhC--------CCCCchhHHHHhhhhhhhcCCCeEEE-----
Q psy1330 135 STADLKAKLS---EVGCFIVGANKQLSPGDQILYRVRDVTA--------TVDNLSLCSASILSKKVAEGTKYLVI----- 198 (221)
Q Consensus 135 s~~~~~~~l~---~~g~~fl~a~~~~~P~~~~l~~lR~~lg--------Ti~~~~l~~asilskk~~~g~~~~v~----- 198 (221)
+++++.+..+ +-|+..+=...+-..+.+.+..++++.+ |+.+.-+.-. -+.+|++.++.
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~-----a~~aGA~fivsp~~~~ 94 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDR-----LADAGGRLIVTPNTDP 94 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHH-----HHHcCCCEEECCCCCH
Confidence 5555555444 5777766332234456667888877664 5666654444 34789999987
Q ss_pred ---------eeecCCCCCCCCHHHHHHHH
Q psy1330 199 ---------DVKVGEASFFKTYEKAKEMA 218 (221)
Q Consensus 199 ---------dv~~g~~a~~~~~~~a~~la 218 (221)
++++++|+. |++|+++-.
T Consensus 95 ~v~~~~~~~~~~~~~G~~--t~~E~~~A~ 121 (206)
T PRK09140 95 EVIRRAVALGMVVMPGVA--TPTEAFAAL 121 (206)
T ss_pred HHHHHHHHCCCcEEcccC--CHHHHHHHH
Confidence 678899966 888876643
No 86
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=38.09 E-value=33 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
+-||.+|.+.+++.+.. -.+.+...++..+..-|..+.|+..+-
T Consensus 1 ~~Lt~~e~~~l~~~~~~--~~~~~~~~~~~l~~~tG~R~~El~~l~ 44 (173)
T PF00589_consen 1 RYLTEEEIKQLLDALEE--KIPLRNRLIILLLLYTGLRPSELLRLR 44 (173)
T ss_dssp -CHHHHHHHHHHHHCCT--CSHHHHHHHHHHHHHHT--HHHHHT-B
T ss_pred CCCCHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHccchhhhhhhh
Confidence 35799999999999887 455666677777778899999998754
No 87
>PHA00438 hypothetical protein
Probab=37.69 E-value=65 Score=23.50 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 21 EIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 21 Ea~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
+..-.++.+-..-.|+.-|+.||.++.+--.|.||+...-+.++
T Consensus 36 ~~sG~i~~lR~~G~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~ 79 (81)
T PHA00438 36 EQSGEIRLLRQAGYSEAFIAGFLAGLQYASRTLDEMEARREQLR 79 (81)
T ss_pred HHhhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334555666667888888888888887777777766655544
No 88
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=37.66 E-value=72 Score=20.20 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 8 LRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 8 i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
|++++....+|+.|..+.+. +++..++.++-. -+..+.+.+..+++++
T Consensus 1 ik~~r~~~gls~~~la~~~g------is~~~i~~~~~g--~~~~~~~~~~~ia~~l 48 (55)
T PF01381_consen 1 IKELRKEKGLSQKELAEKLG------ISRSTISRIENG--KRNPSLDTLKKIAKAL 48 (55)
T ss_dssp HHHHHHHTTS-HHHHHHHHT------S-HHHHHHHHTT--SSTSBHHHHHHHHHHH
T ss_pred CHHHHHHcCCCHHHHHHHhC------CCcchhHHHhcC--CCCCCHHHHHHHHHHH
Confidence 45666677888888777664 566666666655 3445677777666655
No 89
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=37.59 E-value=1.6e+02 Score=29.49 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCC----------Cc---chhhHH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVG----------DK---VSIPLV 96 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg----------~n---iSt~~a 96 (221)
.|..+++.|.-.+|++ .+++....++|+..+..+.+.... .+-+.|.++.+ .+ ...+++
T Consensus 324 ~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~~-~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~ 402 (735)
T PRK14806 324 ISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHNG-RVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLS 402 (735)
T ss_pred HHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCCC-EEEEEcCCCCCCCCCCceeeccCchHHHHHHH
Confidence 4556677777777755 578899999999999887753212 23334433211 01 222333
Q ss_pred HHHHhCCCcEEeecCCCCCCCCc--HHHHHhcCCCCCCC
Q psy1330 97 PALAACGLKVPMVSGRGLDFSGG--TLDKLESIPGYQVN 133 (221)
Q Consensus 97 ~vlAa~Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~ 133 (221)
.+++....+|..+|...+..+.= -.++|+.+ |+++.
T Consensus 403 a~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~-Ga~i~ 440 (735)
T PRK14806 403 GLLAAQSFDSVLTGDASLSKRPMERVAKPLREM-GAVIE 440 (735)
T ss_pred HHHhcCCCeEEEECChhhhhCChHHHHHHHHHC-CCEEE
Confidence 34444455788889887755432 24889999 99885
No 90
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.58 E-value=1.1e+02 Score=27.35 Aligned_cols=144 Identities=20% Similarity=0.149 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC---cch
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD---KVS 92 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~---niS 92 (221)
-|+.+|...+.+.=-.-+++-..+ +|.+|.+-.|-|.=--.=++.++. + ..++-.-|+||..+ +..
T Consensus 75 GLs~eelE~la~~~~a~KvsrrDl-~~vvA~~~~gaTTVAaTMi~A~~a--G--------I~vfaTGGiGGVHrGAe~t~ 143 (310)
T COG2313 75 GLSKEELELLAREGNAMKVSRRDL-PFVVAEGKNGATTVAATMILAALA--G--------IKVFATGGIGGVHRGAEHTF 143 (310)
T ss_pred ecCHHHHHHHhhcCccceeeccch-HHHHhcCcCCcchHHHHHHHHHHc--C--------ceEEEecCcccccCCccccc
Confidence 589999888776654445666555 588888888876321111111111 1 11455567777644 222
Q ss_pred hhHH--HHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCC-CCCHHHHHHHHHhhCceeecCCCcCChh-hhhhHHHh
Q psy1330 93 IPLV--PALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQV-NCSTADLKAKLSEVGCFIVGANKQLSPG-DQILYRVR 168 (221)
Q Consensus 93 t~~a--~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~-~~s~~~~~~~l~~~g~~fl~a~~~~~P~-~~~l~~lR 168 (221)
-.++ .=+|.-++-|+--|.+++=.-.=|.++||.. |+++ ....+++...+.+..-.=.+.. -..|. ..+++..|
T Consensus 144 DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LET~-gVPvvg~~t~~fPaF~sR~Sg~~~pl~-l~~pe~ia~~~~t~ 221 (310)
T COG2313 144 DISADLTELARTNVTVVCAGAKSILDIGLTLEVLETQ-GVPVVGYQTNEFPAFFSRESGFRVPLR-LESPEEIARILATK 221 (310)
T ss_pred ccchhHHHHhcCCeEEEecCchhhhccHHHHHHHHhc-CcceeecCCCcccchhcccCCCcCccc-cCCHHHHHHHHHHH
Confidence 2233 3356777888877877776655677888888 8875 3455555555554332223332 33343 34556666
Q ss_pred hhhC
Q psy1330 169 DVTA 172 (221)
Q Consensus 169 ~~lg 172 (221)
++||
T Consensus 222 ~~lg 225 (310)
T COG2313 222 WQLG 225 (310)
T ss_pred HHhC
Confidence 6666
No 91
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=37.31 E-value=1.5e+02 Score=24.05 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=45.8
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc------CCCHHHHHH-HHHHHHhh
Q psy1330 5 IELLRKKRS--GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFIN------GLTNEETIA-LTKSMVDS 66 (221)
Q Consensus 5 ~~~i~k~~~--g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~k------get~eEl~g-~~~am~~~ 66 (221)
.++|+.+.+ |..+|++.+.+.+..+++.++--.+=+.++.+.--+ |...+|+.+ +.++|...
T Consensus 79 ~~~i~~l~~~I~~~iSq~~~~dII~~Lfde~literE~~li~av~~d~vl~~~~~~r~~lRa~mlk~~l~~ 149 (153)
T COG4463 79 HELINALLQLIGKSISQQAAEDIIQLLFDEKLITEREANLILAVIDDRVLHYDGPERDELRANMLKSMLQR 149 (153)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHhhcCCCcchHHHHHHHHHHHHH
Confidence 445665555 488999999999999998887777777777765544 887788766 66666544
No 92
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.90 E-value=2.5e+02 Score=25.63 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc--chhhHHHHHHhCCCcEEeecCCCCCCCCc---HH---H
Q psy1330 51 LTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK--VSIPLVPALAACGLKVPMVSGRGLDFSGG---TL---D 122 (221)
Q Consensus 51 et~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n--iSt~~a~vlAa~Gv~V~kHG~r~~ts~~G---sa---D 122 (221)
.+|+++..+++++++... +. ..+.+|+ .+| .+++-++.+..+|+..+--+-.+++...| ++ .
T Consensus 170 ~~P~~v~~~v~~l~~~l~----~~--i~ig~H~----HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~ 239 (337)
T PRK08195 170 LLPEDVRDRVRALRAALK----PD--TQVGFHG----HNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVA 239 (337)
T ss_pred CCHHHHHHHHHHHHHhcC----CC--CeEEEEe----CCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHH
Confidence 456666666666665431 11 1355554 233 45555555566898887766777777777 33 4
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 123 KLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 123 vLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
.|+.+ |++...+.+++.+..+.
T Consensus 240 ~L~~~-g~~tgidl~~l~~~a~~ 261 (337)
T PRK08195 240 VLDRM-GWETGVDLYKLMDAAED 261 (337)
T ss_pred HHHhc-CCCCCcCHHHHHHHHHH
Confidence 57788 89888888888877775
No 93
>TIGR01760 tape_meas_TP901 phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails.
Probab=36.57 E-value=2.1e+02 Score=25.43 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=87.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HccCCCHHHHHHHHHHHH-hhCCCCCCCCCCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAM----FINGLTNEETIALTKSMV-DSGETLSWRPEDI 77 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~al----r~kget~eEl~g~~~am~-~~~~~~~~~~~~~ 77 (221)
.+.+.++++...-..|.+|+.+.+..+...-++..++-.|+-.. ..-+.+.+|.+..+..+. .+... ......
T Consensus 39 ~l~~~a~~l~~~~~~s~~ei~~~~~~~~~~G~~~~~~~~~~~~~~~~a~a~~~d~~~~a~~~~~~~~~~~~~--~~~~~~ 116 (350)
T TIGR01760 39 DLSQQARDLGDETPFSATQIAGAMTALARAGISAKDLLGATPTAAKLAAASDLTAEEAASILAKIMNAFGLT--AKDSEK 116 (350)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCC--hhHHHH
Confidence 35566666666667788888888888877777777776665432 223556666655444443 33322 211112
Q ss_pred ceeeccCCCC-CC-------cchhhHHHHHHhCCCcEEee-------cCCCC-CCCCcHH--HHHhcCCCCCCCCCHHHH
Q psy1330 78 VVDKHSTGGV-GD-------KVSIPLVPALAACGLKVPMV-------SGRGL-DFSGGTL--DKLESIPGYQVNCSTADL 139 (221)
Q Consensus 78 ~vD~~gtGGd-g~-------niSt~~a~vlAa~Gv~V~kH-------G~r~~-ts~~Gsa--DvLe~L~Gi~~~~s~~~~ 139 (221)
+.|..-+.+. +. ....-+++.....|+..--- .+.+. ++..|++ .++..| . .+..++
T Consensus 117 ~~D~l~~~~~~~~~~~~~l~~~~~~~~~~a~~~G~~~~e~~a~~~~l~~~g~~~~~agtal~~~~~~l-~----~~~~~~ 191 (350)
T TIGR01760 117 VADVLNYTANNSAATTRDMGDALQYAGPVAKSLGVSLEETAAATAALASAGIEGEIAGTALKAMLSRL-A----APTGKA 191 (350)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-h----cCCHHH
Confidence 4555444333 11 13344556667777652110 01111 2334443 455555 2 233788
Q ss_pred HHHHHhhCceeecCCCcCChhhhhhHHHhhhhC
Q psy1330 140 KAKLSEVGCFIVGANKQLSPGDQILYRVRDVTA 172 (221)
Q Consensus 140 ~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lg 172 (221)
.+.+++.|+.+......+-+..+.+-.+++..+
T Consensus 192 ~~~l~~lGi~~~~~~g~~~~~~~~l~~l~~~~~ 224 (350)
T TIGR01760 192 AKALKKLGIQTRDAKGNMKALLDVLKELQKLTK 224 (350)
T ss_pred HHHHHHcCceehhcCCCCCCHHHHHHHHHHhhc
Confidence 889999998887664345554444455554443
No 94
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=36.25 E-value=57 Score=28.10 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhh
Q psy1330 85 GGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQIL 164 (221)
Q Consensus 85 GGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l 164 (221)
+|-| |+=...+..++++|+.|.--++|+-.+-...++.++.. .+.-+..+..+..-++|+..| |.-....+
T Consensus 7 ~GtG-niG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~------i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~ 77 (211)
T COG2085 7 IGTG-NIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL------ITGGSNEDAAALADVVVLAVP--FEAIPDVL 77 (211)
T ss_pred eccC-hHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc------cccCChHHHHhcCCEEEEecc--HHHHHhHH
Confidence 4444 55667888999999988754455433323334444433 344455556667889999887 55555557
Q ss_pred HHHhhhhC
Q psy1330 165 YRVRDVTA 172 (221)
Q Consensus 165 ~~lR~~lg 172 (221)
..+|..++
T Consensus 78 ~~l~~~~~ 85 (211)
T COG2085 78 AELRDALG 85 (211)
T ss_pred HHHHHHhC
Confidence 77777664
No 95
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.86 E-value=51 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHhhCceeecCCCcCChhh
Q psy1330 138 DLKAKLSEVGCFIVGANKQLSPGD 161 (221)
Q Consensus 138 ~~~~~l~~~g~~fl~a~~~~~P~~ 161 (221)
++...|.+.|+-|++.| .-.-+.
T Consensus 14 E~A~~La~~GIRFVpiP-v~~dee 36 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIP-VVTDEE 36 (61)
T ss_pred HHHHHHHHcCceeeccc-cccHHH
Confidence 45667889999999998 444444
No 96
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=35.30 E-value=2e+02 Score=21.94 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=48.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 8 LRKKRSGNELSPGEIAKFVNLTVTG-TAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 8 i~k~~~g~~Lt~eEa~~~~~~il~g-~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
.+++..-+.||..|++.++..+... +.+..|-=++==+-++...++++...+.+.+.+..
T Consensus 3 ~k~i~~e~~lt~sEa~~iL~~~~~~~els~~~~ktl~y~~kFsk~~~e~a~elve~L~~~~ 63 (112)
T PRK14981 3 GKKILEEEYITIAEAKEILSEIEEERELSYELRRTLDYLNRFSKLDPEDAEELVEELLELE 63 (112)
T ss_pred hhhhhhcccccHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcc
Confidence 4566667789999999999987755 78888888888888888888888888888886654
No 97
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=35.18 E-value=75 Score=30.61 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=16.5
Q ss_pred chhhHHHHHHhCCC--cEEeecCCCC
Q psy1330 91 VSIPLVPALAACGL--KVPMVSGRGL 114 (221)
Q Consensus 91 iSt~~a~vlAa~Gv--~V~kHG~r~~ 114 (221)
.-.--|-++|..++ ||.-=||+..
T Consensus 137 ~~l~NA~~La~~~~~~pIIyAGN~~a 162 (463)
T TIGR01319 137 CGIHNAKMLAEHGLDCAIIVAGNKDI 162 (463)
T ss_pred HHHHHHHHHHhcCCCCcEEEeCCHHH
Confidence 55677888888765 5555588863
No 98
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=35.18 E-value=1.6e+02 Score=20.78 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCCCHHHHH-------HHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIA-------KFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~-------~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
++.-++.++....|||+|.. +.+..|=+|++.|.-.=||-+|-.+ +.|.|++-.+-
T Consensus 2 mknk~k~~R~~~~ltQ~elA~~vgVsRQTi~~iEkgky~Psl~La~kia~~f-~~~iedIF~~~ 64 (68)
T COG1476 2 MKNKLKELRAELGLTQEELAKLVGVSRQTIIAIEKGKYNPSLELALKIARVF-GKTIEDIFQLE 64 (68)
T ss_pred hhhHHHHHHHHhCcCHHHHHHHcCcCHHHHHHHHcCCCCchHHHHHHHHHHh-CCCHHHHHhhh
Confidence 44567788888899999975 5577899999999999999999555 48888876553
No 99
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=33.90 E-value=1.4e+02 Score=29.87 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=58.5
Q ss_pred HHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC--CC-------cchhhHH---HHHHh
Q psy1330 41 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV--GD-------KVSIPLV---PALAA 101 (221)
Q Consensus 41 AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd--g~-------niSt~~a---~vlAa 101 (221)
+++++.-.+|+| .+++..+.++++..+..+++.. . .+-+.|.||. .. |.++++- .+++.
T Consensus 267 ~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~-~-~~~I~g~~~~~~~~~~~i~~g~sGt~~r~L~~~~a~ 344 (673)
T PRK11861 267 VLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG-G-TCVVGGTRGAFTAKTADLFLGNAGTAVRPLTAALAV 344 (673)
T ss_pred HHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC-C-EEEEEcCCCCcCCCCceEecCCcchHHHHHHHHHHc
Confidence 455555567765 6899999999999998886543 2 3444555431 11 1123332 34444
Q ss_pred CCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCC
Q psy1330 102 CGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVN 133 (221)
Q Consensus 102 ~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~ 133 (221)
.+-++..+|+..+.++- --.|.|+.+ |+++.
T Consensus 345 ~~g~~~i~G~~~L~~RPi~~ll~~L~~l-Ga~v~ 377 (673)
T PRK11861 345 NGGEYRIHGVPRMHERPIGDLVDGLRQI-GARID 377 (673)
T ss_pred CCCeEEEECChhhccCChhHHHHHHHHC-CCcEE
Confidence 55678889988887652 346999999 99875
No 100
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=2.4e+02 Score=28.00 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc---------------cCCCHHHHHHHHHHHHhh
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI---------------NGLTNEETIALTKSMVDS 66 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~---------------kget~eEl~g~~~am~~~ 66 (221)
.+|+.+..+++++.+.+|+.+-.++.-+|-+|.- +..+.||+..+++-+.+.
T Consensus 518 ~~l~~~~i~~~~~~~~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls~eEve~iI~eii~~ 584 (631)
T COG2511 518 DNLDDEHIEELLRLVSEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIES 584 (631)
T ss_pred ccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999884 334556666666555543
No 101
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=33.60 E-value=1.4e+02 Score=27.22 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=55.2
Q ss_pred CHHHHHHHH-HHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCc------chhhHHHHH
Q psy1330 35 EDSQIGAML-MAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDK------VSIPLVPAL 99 (221)
Q Consensus 35 ~~~Qi~AfL-~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~n------iSt~~a~vl 99 (221)
++.-+.++| .|...+|+| ..++....+.|++.+..+++.... .+-+.|.+ ..+.+ ++.++.+++
T Consensus 156 s~q~~~~ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~i~~~~~~-~i~I~g~~~~~~~~~~i~~D~~~a~~~l~ 234 (408)
T cd01554 156 SAQVKSALMFAALLAKGETVIIEAAKEPTINHTENMLQTFGGHISVQGTK-KIVVQGPQKLTGQKYVVPGDISSAAFFLV 234 (408)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHCCCEEEecCCc-EEEECCCcccccceEEeCCChhHHHHHHH
Confidence 343444444 455566765 235788899999999888654212 34444421 11111 344444444
Q ss_pred HhC--CCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCC
Q psy1330 100 AAC--GLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCS 135 (221)
Q Consensus 100 Aa~--Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s 135 (221)
+++ |-+|...+....++.....|+|+.+ |++++.+
T Consensus 235 ~~~l~~~~v~i~~~~~~~~~~~~~~~L~~~-G~~v~~~ 271 (408)
T cd01554 235 AAAIAPGRLVLQNVGINETRTGIIDVLRAM-GAKIEIG 271 (408)
T ss_pred HHhhcCCeEEEecCCCCchhhHHHHHHHHc-CCEEEEe
Confidence 442 3356666655433233456899999 9987753
No 102
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.25 E-value=1.6e+02 Score=27.59 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHccCCCHHHHHHHH----HHHHh--hCCCCCCCCCCCceeeccC
Q psy1330 15 NELSPGEIAKFVNLTVTGTAED----SQIGAMLMAMFINGLTNEETIALT----KSMVD--SGETLSWRPEDIVVDKHST 84 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~----~Qi~AfL~alr~kget~eEl~g~~----~am~~--~~~~~~~~~~~~~vD~~gt 84 (221)
..+|.+|.++++....+...+- .|..+...+.+..-.|.|-...+- +.|.+ .+.++ + ...+++
T Consensus 215 ~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~~g~~~--~-----~l~p~~ 287 (406)
T COG1228 215 GQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGTPV--P-----VLLPRT 287 (406)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEecccchHHHHHHhCcceehhhhhcCHhHHHHHhhccCCCcc--c-----cccchh
Confidence 4578888888888777766432 344477777777777766655443 34444 33321 1 111222
Q ss_pred CCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhh
Q psy1330 85 GGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEV 146 (221)
Q Consensus 85 GGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~ 146 (221)
...=....-..+..+...|++|+.......++..+..-+--.+ .++.-++++|+.+..--+
T Consensus 288 ~~~l~e~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l-~~~~gmtp~EaL~a~T~n 348 (406)
T COG1228 288 KFELRELDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMAL-AVRLGMTPEEALKAATIN 348 (406)
T ss_pred hhhhhcccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 2211111122377888999999998888765544555444445 566678999988766533
No 103
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=33.09 E-value=1.7e+02 Score=24.28 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHc------cCC-CHHHHHHHHHHHHhhC----CCCCCCC--CCCceee
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIG--AMLMAMFI------NGL-TNEETIALTKSMVDSG----ETLSWRP--EDIVVDK 81 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~--AfL~alr~------kge-t~eEl~g~~~am~~~~----~~~~~~~--~~~~vD~ 81 (221)
.+++++.++++..++...++..+- -|.=+|+. +|+ +.-+..-.++.|++.. ..++.+. ..+.+=.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i~~~~l~p~m~~vG~~w~~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~ 87 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDIIEEGLAPGMDIVGDKYEEGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVI 87 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Confidence 367788888888776555554442 44444433 333 4333333333433321 1111111 1113333
Q ss_pred ccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCC---cC
Q psy1330 82 HSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANK---QL 157 (221)
Q Consensus 82 ~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~---~~ 157 (221)
...+||... =-..++.++...|+.|.-- | .+.+++++.+.+++.+.-++..+- ..
T Consensus 88 ~~~~gd~H~lG~~~v~~~l~~~G~~vi~l-------------------G--~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 88 GTVEGDIHDIGKNLVATMLEANGFEVIDL-------------------G--RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred EecCCccchHHHHHHHHHHHHCCCEEEEC-------------------C--CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 445677554 2355667788888888532 2 346788888888888876654431 22
Q ss_pred Chhhhhh-HHHhhhhCCCCCchhH-HHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 158 SPGDQIL-YRVRDVTATVDNLSLC-SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 158 ~P~~~~l-~~lR~~lgTi~~~~l~-~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
.|.++++ -.+|+. +.-.+++.+ =++..+-.+ -=.+|..+..+|..+|-++|+
T Consensus 147 ~~~~~~~i~~lr~~-~~~~~~~i~vGG~~~~~~~---------~~~~GaD~~~~da~~av~~~~ 200 (201)
T cd02070 147 MGGMKEVIEALKEA-GLRDKVKVMVGGAPVNQEF---------ADEIGADGYAEDAAEAVAIAK 200 (201)
T ss_pred HHHHHHHHHHHHHC-CCCcCCeEEEECCcCCHHH---------HHHcCCcEEECCHHHHHHHHh
Confidence 2444443 223322 211122111 111222111 123466667778888888875
No 104
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=32.69 E-value=83 Score=23.59 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=49.7
Q ss_pred chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC-------CHHHHHHHHHh-hCceee-cCCC--cCCh
Q psy1330 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC-------STADLKAKLSE-VGCFIV-GANK--QLSP 159 (221)
Q Consensus 91 iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~-------s~~~~~~~l~~-~g~~fl-~a~~--~~~P 159 (221)
-....+..+...|+++. .+.||++.|+.- |+++.. .-.++.+.+.+ ..+.++ ..+. ...+
T Consensus 13 ~~~~~a~~l~~~G~~i~--------AT~gTa~~L~~~-Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~ 83 (112)
T cd00532 13 MLVDLAPKLSSDGFPLF--------ATGGTSRVLADA-GIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRC 83 (112)
T ss_pred HHHHHHHHHHHCCCEEE--------ECcHHHHHHHHc-CCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccc
Confidence 34455666668888886 356899999998 987542 22568888888 787655 2221 1122
Q ss_pred hhhhhHHHhhhhCCCCCchhHH
Q psy1330 160 GDQILYRVRDVTATVDNLSLCS 181 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~ 181 (221)
....-+.+||.=- -.++|.++
T Consensus 84 ~~~dg~~iRR~A~-~~~Ip~~T 104 (112)
T cd00532 84 TDEDGTALLRLAR-LYKIPVTT 104 (112)
T ss_pred cCCChHHHHHHHH-HcCCCEEE
Confidence 3444667776442 34555443
No 105
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=32.26 E-value=7e+02 Score=27.24 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=63.8
Q ss_pred CCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhh
Q psy1330 85 GGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQI 163 (221)
Q Consensus 85 GGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~ 163 (221)
.||..- =-.+++.++...|+.|.--| + ..+++++.+..++.+.-++..+-...|.+..
T Consensus 760 ~GDvHDIGkniV~~~L~~~GfeVIdLG-------------------~--~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~ 818 (1229)
T PRK09490 760 KGDVHDIGKNIVGVVLQCNNYEVIDLG-------------------V--MVPAEKILETAKEENADIIGLSGLITPSLDE 818 (1229)
T ss_pred CCCcchHHHHHHHHHHHhCCCEEEECC-------------------C--CCCHHHHHHHHHHhCCCEEEEcCcchhhHHH
Confidence 555332 22467788888899888433 3 4578899999998888766555345566666
Q ss_pred hHHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeeec-CCCCCCCCHHHHHHHHH
Q psy1330 164 LYRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVKV-GEASFFKTYEKAKEMAE 219 (221)
Q Consensus 164 l~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~~-g~~a~~~~~~~a~~la~ 219 (221)
+..+.++|. -+.-...+-++.+|++.++-- |.-.| |.....+|.-+|-++|+
T Consensus 819 m~~~i~~L~~~g~~v~v~vGGa~~s~~~ta~~----i~~~y~gad~y~~DA~~~v~~~~ 873 (1229)
T PRK09490 819 MVHVAKEMERQGFTIPLLIGGATTSKAHTAVK----IAPNYSGPVVYVTDASRAVGVVS 873 (1229)
T ss_pred HHHHHHHHHhcCCCCeEEEEeeccchhhhhhh----hhhcccCCcEEecCHHHHHHHHH
Confidence 655555444 133334455667776553210 00011 55556666666666654
No 106
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=32.23 E-value=66 Score=22.58 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HccCCCHHHHHHHHHHHHh
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAM---FINGLTNEETIALTKSMVD 65 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~al---r~kget~eEl~g~~~am~~ 65 (221)
++++|++--=+|+.+++-++|... .=++|+.|++|||--= .++.-+.+++..|.+.+.-
T Consensus 3 dILrkLRyal~l~d~~m~~if~l~-~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GLi~ 64 (68)
T PF07308_consen 3 DILRKLRYALDLKDDDMIEIFALA-GFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGLII 64 (68)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHc-CCccCHHHHHHHHCCCCCccccccChHHHHHHHHHHHH
Confidence 467788888889999998888754 4579999999998652 2223357778888877754
No 107
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=32.00 E-value=1.1e+02 Score=28.54 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHh--hCC-C---CCCCC--CC-CceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 51 LTNEETIALTKSMVD--SGE-T---LSWRP--ED-IVVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 51 et~eEl~g~~~am~~--~~~-~---~~~~~--~~-~~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
-|.+|+..+.+.+.+ ... . .++.. .. .+|=+++. ||.|+. ++...|..+|..|.+|+.-=-.
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 578999999998876 111 1 12211 11 24555544 899985 6777788899999999876433
No 108
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=31.89 E-value=3.2e+02 Score=27.56 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=43.2
Q ss_pred ceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeecCCC----------CCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 78 VVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVSGRG----------LDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 78 ~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~----------~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
+|=+.|. ||.|+. ++.-.|..+|..|.+|..-...- .....|-.|+|.. ..+++++......
T Consensus 533 vI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~------~~~~~~~i~~~~~ 606 (726)
T PRK09841 533 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAG------KDELNKVIQHFGK 606 (726)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCC------CCCHHHheeccCC
Confidence 4555554 678985 78888888999999999754322 2223344454321 2345555444444
Q ss_pred hCceeecCC
Q psy1330 146 VGCFIVGAN 154 (221)
Q Consensus 146 ~g~~fl~a~ 154 (221)
.|+.+++..
T Consensus 607 ~~l~vl~~g 615 (726)
T PRK09841 607 GGFDVITRG 615 (726)
T ss_pred CCEEEEeCC
Confidence 578888664
No 109
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.85 E-value=1.7e+02 Score=20.04 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=44.5
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
....++..+....-||.+|...+-. ...+..+..-||-.+..||+ +-...|.+++++..
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~----~~~~~~k~~~Lld~l~~kg~--~af~~F~~~L~~~~ 72 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRS----ESTRQDKARKLLDILPRKGP--KAFQSFLQALQETD 72 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHc----CCChHHHHHHHHHHHHhcCh--HHHHHHHHHHHhcC
Confidence 3456777777888999999877554 23377899999999999995 44566888888654
No 110
>PRK06256 biotin synthase; Validated
Probab=30.88 E-value=55 Score=29.34 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.0
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHH
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFV 26 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~ 26 (221)
|..+.++++|..+|+.+|.||+.+++
T Consensus 4 ~~~~~~~~~~~~~g~~~~~~e~~~ll 29 (336)
T PRK06256 4 MDDILKLARKLLEGEGLTKEEALALL 29 (336)
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45688899999999999999988765
No 111
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.53 E-value=23 Score=25.86 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCC----CCC--CH---H---HHHHHHHhhCceee-cCCCcCChhh
Q psy1330 95 LVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQ----VNC--ST---A---DLKAKLSEVGCFIV-GANKQLSPGD 161 (221)
Q Consensus 95 ~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~----~~~--s~---~---~~~~~l~~~g~~fl-~a~~~~~P~~ 161 (221)
.|--+...|+.+. .+.||++.|+.. |++ +.. .+ + ++.+.+++..+.++ ..+..+....
T Consensus 5 ~a~~l~~lG~~i~--------AT~gTa~~L~~~-Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~ 75 (95)
T PF02142_consen 5 LAKRLAELGFEIY--------ATEGTAKFLKEH-GIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQE 75 (95)
T ss_dssp HHHHHHHTTSEEE--------EEHHHHHHHHHT-T--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHH
T ss_pred HHHHHHHCCCEEE--------EChHHHHHHHHc-CCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCcccc
Confidence 3455677777776 467899999999 998 321 22 1 28899999888765 2221233333
Q ss_pred h-hhHHHhhhh
Q psy1330 162 Q-ILYRVRDVT 171 (221)
Q Consensus 162 ~-~l~~lR~~l 171 (221)
. .-+.+|+.-
T Consensus 76 ~~dg~~irr~a 86 (95)
T PF02142_consen 76 HTDGYKIRRAA 86 (95)
T ss_dssp THHHHHHHHHH
T ss_pred cCCcHHHHHHH
Confidence 3 456777643
No 112
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=30.06 E-value=39 Score=29.58 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=29.3
Q ss_pred cCChhhhhhHHHhhhhC-C-------CCCchhHHHHhhhhhhhcC-CCeEEEeeecCCCCCCCC
Q psy1330 156 QLSPGDQILYRVRDVTA-T-------VDNLSLCSASILSKKVAEG-TKYLVIDVKVGEASFFKT 210 (221)
Q Consensus 156 ~~~P~~~~l~~lR~~lg-T-------i~~~~l~~asilskk~~~g-~~~~v~dv~~g~~a~~~~ 210 (221)
.|.-++...-.||..|. + ++---..-+++++++-.-. .|-|+=|+|||+-.--..
T Consensus 123 s~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g 186 (246)
T PF11599_consen 123 SHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG 186 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC
Confidence 56666777777776654 2 2322234556666665544 455555999999665443
No 113
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=30.04 E-value=1.8e+02 Score=26.65 Aligned_cols=92 Identities=24% Similarity=0.264 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC----------cchhhHHH--
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD----------KVSIPLVP-- 97 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~----------niSt~~a~-- 97 (221)
.+-+ +++|.-..|.| .+++....+++++.+..+.+ . .+.+.|.|+.|. +..+..-+
T Consensus 26 ~~r~-l~~a~La~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~-~---~~~i~~~~~~~~~~~~~~i~~~~sg~~~r~l~ 100 (435)
T PRK02427 26 SHRA-LLLAALAEGETTITNLLRSEDTLATLNALRALGVEIED-D---EVVVEGVGGGGLKEPEDVLDCGNSGTTMRLLT 100 (435)
T ss_pred HHHH-HHHHHhcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc-c---eEEEEccCCCCCCCCCCEEEccCchHHHHHHH
Confidence 3444 44443456665 67899999999999988765 2 233334333221 11233222
Q ss_pred -HHHhCCCcEEeecCCCCC--CCCcHHHHHhcCCCCCCCC
Q psy1330 98 -ALAACGLKVPMVSGRGLD--FSGGTLDKLESIPGYQVNC 134 (221)
Q Consensus 98 -vlAa~Gv~V~kHG~r~~t--s~~GsaDvLe~L~Gi~~~~ 134 (221)
+++.++-++..+|...+. ......+.|+.+ |++++.
T Consensus 101 ~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~l-Ga~i~~ 139 (435)
T PRK02427 101 GLLALQPGEVVLTGDESLRKRPMGRLLDPLRQM-GAKIEG 139 (435)
T ss_pred HHHHhCCCeEEEECChhhccCChHHHHHHHHHC-CCEEEe
Confidence 233345588889866543 234567999999 998863
No 114
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=29.27 E-value=1.6e+02 Score=23.77 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHccCCCHHHHHHHHHH
Q psy1330 18 SPGEIAKFVNLTV-----TGTAEDSQIGAMLMAMFINGLTNEETIALTKS 62 (221)
Q Consensus 18 t~eEa~~~~~~il-----~g~~~~~Qi~AfL~alr~kget~eEl~g~~~a 62 (221)
|.+|...+...++ +|++++.++..+--.|+-.|.+.++...+.+.
T Consensus 19 ~~~~~~~~~~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~ 68 (150)
T cd07311 19 TNQDKLAYLKALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY 68 (150)
T ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4777777777766 89999999988877777778898887777777
No 115
>PF02763 Diphtheria_C: Diphtheria toxin, C domain; InterPro: IPR022406 This entry represents the N-terminal catalytic domain (also known as the C domain). This domain has an unusual beta+alpha fold []. The C domain blocks protein synthesis by transfer of ADP-ribose from NAD to a diphthamide residue of EF-2 [, ]. Diphtheria toxin (2.4.2.36 from EC) is a 58 kDa protein secreted by lysogenic strains of Corynebacterium diphtheriae. The toxin causes the disease diphtheria in humans by gaining entry into the cell cytoplasm and inhibiting protein synthesis []. The mechanism of inhibition involves transfer of the ADP-ribose group of NAD to elongation factor-2 (EF-2), rendering EF-2 inactive. The catalysed reaction is as follows: NAD+ + peptide diphthamide = nicotinamide + peptide N-(ADP-D-ribosyl)diphthamide The crystal structure of the diphtheria toxin homodimer has been determined to 2.5A resolution []. The structure reveals a Y-shaped molecule of 3 domains, a catalytic domain (fragment A), whose fold is of the alpha + beta type; a transmembrane (TM) domain, which consists of 9 alpha-helices, 2 pairs of which may participate in pH-triggered membrane insertion and translocation; and a receptor-binding domain, which forms a flattened beta-barrel with a jelly-roll-like topology []. The TM- and receptor binding-domains together constitute fragment B.; PDB: 1MDT_B 1SGK_A 1F0L_B 1DDT_A 1TOX_B 4AE0_A 1DTP_A 1XDT_T 4AE1_A.
Probab=29.07 E-value=20 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=24.5
Q ss_pred hhhhhcCCCeEEEeeecCCCCC----CCCHHHHHHHH
Q psy1330 186 SKKVAEGTKYLVIDVKVGEASF----FKTYEKAKEMA 218 (221)
Q Consensus 186 skk~~~g~~~~v~dv~~g~~a~----~~~~~~a~~la 218 (221)
-|+..-|+..+|+.+|+-+|+- +.+|+||+.|.
T Consensus 124 ikrfgdgasrvvlslpfaegsssveyinnweqakals 160 (187)
T PF02763_consen 124 IKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALS 160 (187)
T ss_dssp HHHHSTT-SEEEEEEESSTT-S-EEEEE-TTGGGG-E
T ss_pred HHHhcCCcceEEEecccccCcchhhhhhhHHHhhcce
Confidence 4778899999999999999875 67888888763
No 116
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=28.92 E-value=37 Score=30.45 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=32.8
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhc
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLES 126 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~ 126 (221)
++=..|-||.|+. ++.+.|.-+|..|.+|..-+-.... .-.|+|..
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~---~L~d~l~~ 49 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH---SLSDVLGQ 49 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT---HHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc---cHHHHhCC
Confidence 3446789999985 8888889999999999998755432 23455543
No 117
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.88 E-value=62 Score=22.00 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=24.2
Q ss_pred eeccCCCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 80 DKHSTGGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 80 D~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
=+.|.+|.|+. ++...+..+++.|.+|..-.
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 35678888885 77777888888899988766
No 118
>PLN02913 dihydrofolate synthetase
Probab=28.64 E-value=1.6e+02 Score=28.34 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=28.2
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLD 115 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~t 115 (221)
+|=+.||.|+|.- +...+-++-++|++|-...+.-+-
T Consensus 77 vIhVaGTNGKGSt-~a~l~~iL~~aG~~vG~fTSPHl~ 113 (510)
T PLN02913 77 AVHVAGTKGKGST-AAFLSNILRAQGYSVGCYTSPHLR 113 (510)
T ss_pred EEEEeCCCchHHH-HHHHHHHHHhcCCCeEEECCCCCc
Confidence 7899999998854 445556668899999998666543
No 119
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.32 E-value=2.2e+02 Score=23.62 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVT-GTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGE 68 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~-g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~ 68 (221)
++++++.+..+ .+....++..+.. |.+|+.++|..| |.+..++.-....|.+.+.
T Consensus 10 v~~~l~~~~~~----~~~~~~Vl~~L~~~g~~tdeeLA~~L------gi~~~~VRk~L~~L~e~gL 65 (178)
T PRK06266 10 VQKVLFEIMEG----DEEGFEVLKALIKKGEVTDEEIAEQT------GIKLNTVRKILYKLYDARL 65 (178)
T ss_pred HHHHHHHHhcC----CccHhHHHHHHHHcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCC
Confidence 56677777764 4455667777765 899999999888 8899999888888887654
No 120
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=28.31 E-value=1e+02 Score=28.66 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCC
Q psy1330 56 TIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 56 l~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+.-+.+.|...+.+-+ ..+ +|=+.||.|+|. ++...+-++.++|++|-..++.
T Consensus 32 l~~~~~ll~~lg~p~~--~~~-~I~VtGTNGKgS-t~~~l~~iL~~~G~~vG~~tSp 84 (416)
T PRK10846 32 LERVSQVAARLDLLKP--APF-VFTVAGTNGKGT-TCRTLESILMAAGYRVGVYSSP 84 (416)
T ss_pred hHHHHHHHHHhCCCcc--CCC-EEEEECCCChHH-HHHHHHHHHHHcCCCceEECCC
Confidence 3344444555554422 122 788999988774 4666677778899999999876
No 121
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=27.92 E-value=1.9e+02 Score=20.28 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
...|......+.||+.|+.+.+. ++..+++-++-+ +..+.|.+.+..++.++
T Consensus 20 ~~~i~~~~~~~~ltQ~e~A~~lg------isq~~vS~l~~g-~~~~~sl~~L~~~l~aL 71 (80)
T PF13744_consen 20 MAAIRELREERGLTQAELAERLG------ISQPRVSRLENG-KIDDFSLDTLLRYLEAL 71 (80)
T ss_dssp HHHHHHHHHCCT--HHHHHHHHT------S-HHHHHHHHTT--GCC--HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC------CChhHHHHHHcC-cccCCCHHHHHHHHHHc
Confidence 34466666667777777776652 444455443322 45555666666665554
No 122
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=27.77 E-value=2.4e+02 Score=22.25 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMF 47 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr 47 (221)
.++.+...++++.+.+|+.|..+.=-+|-.+-
T Consensus 38 ~i~~~~l~~li~lv~~g~It~~~ak~vl~~~~ 69 (147)
T smart00845 38 PITPEHLAELLKLIEDGTISGKIAKEVLEELL 69 (147)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 35666666666666666666655554444443
No 123
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.59 E-value=1.1e+02 Score=22.79 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccC
Q psy1330 18 SPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFING 50 (221)
Q Consensus 18 t~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kg 50 (221)
|.|||-++++.+- .|+.++.-..++=..++-||
T Consensus 46 T~EEAlEii~yleKrGEi~~E~A~~L~~~~~~kg 79 (98)
T COG4003 46 TEEEALEIINYLEKRGEITPEMAKALRVTLVHKG 79 (98)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHhhHHHHH
Confidence 8899999999876 78888877777666666555
No 124
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=27.50 E-value=1e+02 Score=24.35 Aligned_cols=31 Identities=23% Similarity=0.058 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 33 TAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 33 ~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
+.+.++.-+|| +-||+|.|||..+.+-....
T Consensus 20 ~sp~~~k~~FL---~sKGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 20 NSPLEKKIAFL---ESKGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp CS-HHHHHHHH---HHCT--HHHHHHHHHHHT--
T ss_pred cCCHHHHHHHH---HcCCCCHHHHHHHHHhcCCc
Confidence 35678999998 55999999998776655433
No 125
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.47 E-value=4.7e+02 Score=23.76 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc--chhhHHHHHHhCCCcEEeecCCCCCCCCc---HH---H
Q psy1330 51 LTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK--VSIPLVPALAACGLKVPMVSGRGLDFSGG---TL---D 122 (221)
Q Consensus 51 et~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n--iSt~~a~vlAa~Gv~V~kHG~r~~ts~~G---sa---D 122 (221)
.+|+++...++++++...+ + ..+.+|+ .+| .+++-++.+..+|+..+--+-.+++...| +. .
T Consensus 169 ~~P~~v~~~v~~l~~~l~~---~---i~ig~H~----HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~ 238 (333)
T TIGR03217 169 MLPDDVRDRVRALKAVLKP---E---TQVGFHA----HHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVA 238 (333)
T ss_pred CCHHHHHHHHHHHHHhCCC---C---ceEEEEe----CCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHH
Confidence 3456666666666544221 0 1245553 223 45555555566888887666777776666 33 4
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHhh
Q psy1330 123 KLESIPGYQVNCSTADLKAKLSEV 146 (221)
Q Consensus 123 vLe~L~Gi~~~~s~~~~~~~l~~~ 146 (221)
.|+.+ |++...+.+++.+..+..
T Consensus 239 ~l~~~-g~~tgidl~~l~~~a~~~ 261 (333)
T TIGR03217 239 VLDRL-GWNTGCDLFKLMDAAEDI 261 (333)
T ss_pred HHHhc-CCCCCcCHHHHHHHHHHH
Confidence 57778 888888888887776643
No 126
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=27.29 E-value=3.5e+02 Score=24.75 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHc--cCC---C-------HHHHHHHHHHHHhhCCCCC-CCC-CCCceeeccCCC-CCCc------
Q psy1330 32 GTAEDSQIGAMLMAMFI--NGL---T-------NEETIALTKSMVDSGETLS-WRP-EDIVVDKHSTGG-VGDK------ 90 (221)
Q Consensus 32 g~~~~~Qi~AfL~alr~--kge---t-------~eEl~g~~~am~~~~~~~~-~~~-~~~~vD~~gtGG-dg~n------ 90 (221)
+..+...+.++|++.-. +|+ + ...+.-..++|++.+..++ ... ....+.+.|.+. .+.+
T Consensus 162 ~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~l~~~~~~i~~D 241 (435)
T PRK02427 162 GPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDITVPGD 241 (435)
T ss_pred CCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCcccccceEEeCCC
Confidence 33344456666644322 355 2 3346667899999988775 321 001344444221 1211
Q ss_pred chhhHHHHHHh---CCCcEEeecCCCCCCCCc--HHHHHhcCCCCCCCC
Q psy1330 91 VSIPLVPALAA---CGLKVPMVSGRGLDFSGG--TLDKLESIPGYQVNC 134 (221)
Q Consensus 91 iSt~~a~vlAa---~Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~~ 134 (221)
+|..+.+++++ .|..|..++-...+.... ..|+|+.+ |+++..
T Consensus 242 ~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~~-G~~v~~ 289 (435)
T PRK02427 242 PSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKM-GADIEI 289 (435)
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHHc-CCceEe
Confidence 44434344433 254677776433344445 67999999 998874
No 127
>PLN02641 anthranilate phosphoribosyltransferase
Probab=27.26 E-value=2.2e+02 Score=26.20 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=40.5
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTN 53 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~ 53 (221)
+..+++..+.+| .+..|.-.++-.+.-...|+.++++|.-+||-+....
T Consensus 21 Ea~~~~~~il~~--~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~ 69 (343)
T PLN02641 21 EAEAALDFLLDD--ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKV 69 (343)
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 456777888875 7999999999888777779999999999999887644
No 128
>cd01199 INT_Tn1545_C Tn1545-related conjugative transposon integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes bacterial (gram positive) and phage integrases, including those similar to Tn1545, Tn5252, and Tn5276 conjugative transposon integrases and Lactobacillus phage phi adh integrase.
Probab=27.24 E-value=1.1e+02 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~ 61 (221)
||.||...+++.+-... ......+++..+..-|.-..|+.++--
T Consensus 2 lt~ee~~~l~~~~~~~~-~~~~~~~~~~l~~~tG~R~~Ei~~L~~ 45 (205)
T cd01199 2 LEKNELKALLDVLNSYK-NNQLYADILEFLFLTGMRIGELLALQE 45 (205)
T ss_pred CCHHHHHHHHHHHHhcc-chhHHHHHHHHHHHhCChHHHHhcCch
Confidence 78999999999875533 244566777777889999999998753
No 129
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=27.12 E-value=1.9e+02 Score=26.34 Aligned_cols=80 Identities=13% Similarity=-0.040 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCc------chhhHHHHHHhC--CCcEEeecCCCCCCCCcH--H
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDK------VSIPLVPALAAC--GLKVPMVSGRGLDFSGGT--L 121 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~n------iSt~~a~vlAa~--Gv~V~kHG~r~~ts~~Gs--a 121 (221)
..++.-..++|++.+.++.+.... .+.+.|.+ ..+.+ +|.++-+++|++ |-.|..++....+..... .
T Consensus 180 ~~~i~~~l~~L~~~G~~i~~~~~~-~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~ 258 (409)
T TIGR01356 180 RPYIEITLDLLGSFGVEVERSDGR-KIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAII 258 (409)
T ss_pred cCHHHHHHHHHHHCCcEEEEcCCc-EEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHH
Confidence 467888999999999888654321 35555422 12221 444443444432 226777765443444443 6
Q ss_pred HHHhcCCCCCCCC
Q psy1330 122 DKLESIPGYQVNC 134 (221)
Q Consensus 122 DvLe~L~Gi~~~~ 134 (221)
++|+.+ |++++.
T Consensus 259 ~~L~~~-Ga~i~~ 270 (409)
T TIGR01356 259 IVLEEM-GADIEV 270 (409)
T ss_pred HHHHHc-CCeEEE
Confidence 899999 999874
No 130
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=27.02 E-value=1e+02 Score=20.83 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 32 GTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 32 g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
.+..++|.-||---+++.+.|.|+--+|++.+.+.
T Consensus 3 ~~~~~~QQnAFY~vl~~~nLteeQrn~yI~~lKdd 37 (54)
T PF02216_consen 3 PNFDVAQQNAFYEVLHMPNLTEEQRNGYIQSLKDD 37 (54)
T ss_dssp STHHHHHHHHHHHHHCSTTS-HHHHHHHHHHHHH-
T ss_pred cchhHHHHHHHHHHHcCCCcCHHHHHhHHHHHhhC
Confidence 34567889999999999999999999999988865
No 131
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=26.85 E-value=2.5e+02 Score=25.71 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=60.1
Q ss_pred chhhHHHHHHh--CCCcEEeecCCCCCCCCc-----HHHHHhcCCCCCC---CCCHHHHHHHHHh-hCc-eeecCCC--c
Q psy1330 91 VSIPLVPALAA--CGLKVPMVSGRGLDFSGG-----TLDKLESIPGYQV---NCSTADLKAKLSE-VGC-FIVGANK--Q 156 (221)
Q Consensus 91 iSt~~a~vlAa--~Gv~V~kHG~r~~ts~~G-----saDvLe~L~Gi~~---~~s~~~~~~~l~~-~g~-~fl~a~~--~ 156 (221)
+=|-.+|-.|. .|..|+.-+....+++-| |.-.|+++ |+++ ..+.+.+.+.+.+ .++ -++.+.+ +
T Consensus 58 TRTr~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ay-g~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~ 136 (316)
T COG0540 58 TRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAY-GVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSH 136 (316)
T ss_pred CchhhhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhh-CCCEEEEeCccccHHHHHHHhcCCCceEECCCCCC
Confidence 44677888775 688999888766666666 45678888 8774 3466777777776 344 4664432 6
Q ss_pred CChh--hhhhHHHhhhhCCCCCc
Q psy1330 157 LSPG--DQILYRVRDVTATVDNL 177 (221)
Q Consensus 157 ~~P~--~~~l~~lR~~lgTi~~~ 177 (221)
-||- +=.++.||++.|.++++
T Consensus 137 qHPTQ~LLDl~TI~~~~G~~~gl 159 (316)
T COG0540 137 QHPTQALLDLYTIREEFGRLDGL 159 (316)
T ss_pred CCccHHHHHHHHHHHHhCCcCCc
Confidence 7885 44679999999976554
No 132
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=26.81 E-value=73 Score=23.31 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhc
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVT 31 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~ 31 (221)
.++++.+...-.+|+.|+..+++.+++
T Consensus 4 ~eli~~ia~~~~~s~~~~~~~v~~~~~ 30 (90)
T PRK10664 4 SQLIDKIAAGADISKAAAGRALDAIIA 30 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466666666667777777777766653
No 133
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=26.51 E-value=1.8e+02 Score=28.92 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=54.4
Q ss_pred HHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC----CC-----cchhh---HHHHHHhCC
Q psy1330 43 LMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV----GD-----KVSIP---LVPALAACG 103 (221)
Q Consensus 43 L~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd----g~-----niSt~---~a~vlAa~G 103 (221)
++|.-..|++ .+++..+.+++++.+..+.+.. . .+.+.|.||. .. |.++. ...+++..+
T Consensus 33 ~lAaLa~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~-~-~i~I~g~g~~l~~~~~~i~~g~sGtt~r~Ll~~~al~~ 110 (661)
T PRK11860 33 LLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLG-D-TYRITGLGGQFPVKQADLFLGNAGTAMRPLTAALALLG 110 (661)
T ss_pred HHHHhCCCCEEEccCCccHHHHHHHHHHHHcCCEEEecC-C-EEEEECCCCCcCCCCceEEeCCchHHHHHHHHHHHcCC
Confidence 3333456655 5889999999999998876542 2 3444444330 11 11221 222344446
Q ss_pred CcEEeecCCCCCCCCc--HHHHHhcCCCCCCC
Q psy1330 104 LKVPMVSGRGLDFSGG--TLDKLESIPGYQVN 133 (221)
Q Consensus 104 v~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~ 133 (221)
-++..||...+.++.= -.++|+.+ |+++.
T Consensus 111 g~~~i~g~~~L~~RP~~~Ll~~L~~l-Ga~v~ 141 (661)
T PRK11860 111 GEYELSGVPRMHERPIGDLVDALRQL-GCDID 141 (661)
T ss_pred CeEEEECCchhhcCChHHHHHHHHHC-CCEEE
Confidence 6888899887765542 36999999 99886
No 134
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=26.49 E-value=2e+02 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=25.9
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGL 114 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ 114 (221)
+|=+.||.|+|+-...+ .-++.++|++|-.+-+.-+
T Consensus 46 vIhVaGTNGKGSt~afl-~siL~~aG~~VG~yTSPHL 81 (427)
T COG0285 46 VIHVAGTNGKGSTCAFL-ESILREAGYKVGVYTSPHL 81 (427)
T ss_pred eEEEeCCCCchhHHHHH-HHHHHHcCCCceEECCCcc
Confidence 89999999999653333 4455589999877766543
No 135
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=26.32 E-value=1.4e+02 Score=25.93 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=29.8
Q ss_pred ceeeccCCCCCCc--chhhHHHHHHhCCCc-EEeec---CCCCCCCCcHH
Q psy1330 78 VVDKHSTGGVGDK--VSIPLVPALAACGLK-VPMVS---GRGLDFSGGTL 121 (221)
Q Consensus 78 ~vD~~gtGGdg~n--iSt~~a~vlAa~Gv~-V~kHG---~r~~ts~~Gsa 121 (221)
++=.+|-||...+ --....-+++..|++ |..|- +|..+++||..
T Consensus 32 l~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~ 81 (223)
T PF06415_consen 32 LMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALK 81 (223)
T ss_dssp EEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHH
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHH
Confidence 5667888999775 445556677889987 88887 89999888753
No 136
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=26.06 E-value=56 Score=28.36 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=25.7
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
+-++|=||.|+. ++.-.|..+|..|.+|..-
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 456788999986 6777788999999999875
No 137
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=26.00 E-value=81 Score=27.58 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=49.1
Q ss_pred HHHHHHHHhCC--------CCCCHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 4 IIELLRKKRSG--------NELSPGEIAKFVNLTVTGTAEDSQIG--------AMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 4 ~~~~i~k~~~g--------~~Lt~eEa~~~~~~il~g~~~~~Qi~--------AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
|..++|.+.+. -+-...+++.+++.|.-||-||.-.. =.|-||+--|-+.+.+..|++.+++-
T Consensus 31 FMSLlK~LQ~~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~fl~~~~~g 109 (232)
T PF11251_consen 31 FMSLLKALQRDLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRFLSLLREG 109 (232)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHcC
Confidence 56677777665 24567799999999999998886543 36888898999999999998888754
No 138
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=25.95 E-value=3.2e+02 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLT 52 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget 52 (221)
+.+++..+.+| +.|..|.-.++-.+.-...|+.++++|+-+||-+...
T Consensus 213 a~~~~~~il~g-~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~ 260 (534)
T PRK14607 213 AEDVMEDITDG-NATDAQIAGFLTALRMKGETADELAGFASVMREKSRH 260 (534)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc
Confidence 45566666655 3467777777777665556888888888888877653
No 139
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=25.70 E-value=1.5e+02 Score=27.29 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.1
Q ss_pred hHHHhhhhCCCCCchhHHHHhhhhh
Q psy1330 164 LYRVRDVTATVDNLSLCSASILSKK 188 (221)
Q Consensus 164 l~~lR~~lgTi~~~~l~~asilskk 188 (221)
++.+||+.|++ .-++|||.-
T Consensus 235 lqa~~R~~~~L-----tcadIMSrd 254 (382)
T COG3448 235 LQALRRRMGEL-----TCADIMSRD 254 (382)
T ss_pred HHHHHHHhccc-----cHHHhcCcc
Confidence 57888888854 478999983
No 140
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.64 E-value=1.5e+02 Score=26.85 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=35.7
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 49 NGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 49 kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
..+|+++...+++.+++.... +.++++|=.||| |-.- ..-++.+++...+.||+..|+-
T Consensus 55 s~~t~~~w~~la~~i~~~~~~---~~~dG~VVtHGT--DTmeeTA~~Ls~~l~~l~kPVVlTGa~ 114 (323)
T smart00870 55 SNMTPADWLKLAKRINEALAD---DGYDGVVVTHGT--DTLEETAYFLSLTLDSLDKPVVLTGAM 114 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhcc---CCCCEEEEecCC--ccHHHHHHHHHHHhhcCCCCEEEECCC
Confidence 346777777777777664221 223456667776 4432 4455566666667788888753
No 141
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=25.54 E-value=60 Score=26.93 Aligned_cols=31 Identities=39% Similarity=0.477 Sum_probs=25.3
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
|=+.|-||.|+. ++.-.|..+|..|.+|..-
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 445688999985 7888889999999999864
No 142
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.53 E-value=70 Score=25.36 Aligned_cols=29 Identities=41% Similarity=0.646 Sum_probs=23.9
Q ss_pred ccCCCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 82 HSTGGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 82 ~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
.+-||.|+. ++...|..+|..|.+|..--
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 345899986 78888999999999998864
No 143
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=25.52 E-value=59 Score=27.90 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=24.8
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
|=+.|=||.|+. +++-.|..+|..|.+|..-
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 345588999986 6777888999999999853
No 144
>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus phage phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286, bIL311, ul36 and phi g1e; Staphylococcus aureus phage phi13 and phi42; Oenococcus oeni phage fOg44; Streptococcus thermophilus phage O1205 and Sfi21; and Streptococcus pyogenes phage T12 and T270.
Probab=25.49 E-value=1e+02 Score=23.98 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
+-||.+|+.++++.+-.. .....-+++..+..-|....|+.++-
T Consensus 1 ~~lt~~e~~~l~~~~~~~--~~~~~~~~~~l~~~~G~R~~Ei~~l~ 44 (191)
T cd01189 1 KFLTKEELKKLLEYLKKH--ENSFSKLLILLLAYTGLRIGEALALT 44 (191)
T ss_pred CCCCHHHHHHHHHHHHhc--cCccHHHHHHHHHHhccHHHHHhhce
Confidence 358999999999988753 33455666666677999999998754
No 145
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.46 E-value=2.1e+02 Score=30.30 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCC
Q psy1330 52 TNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGY 130 (221)
Q Consensus 52 t~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi 130 (221)
|.+| ++.+|++..+.+++-.. ..++-+ +|.++ -....+-.+...|++|. ++.||++.|+.. |+
T Consensus 918 ~~~~--a~~k~~~~~~~~~p~~~-~~lisv----~~~dK~~l~~~a~~l~~~G~~i~--------aT~gT~~~l~~~-gi 981 (1066)
T PRK05294 918 TFGE--AFAKAQLAAGNRLPTSG-TVFLSV----RDRDKEEVVELAKRLLELGFKIL--------ATSGTAKFLREA-GI 981 (1066)
T ss_pred CHHH--HHHHHHHhcccccCCCC-eEEEEe----ccccHHHHHHHHHHHHHcCCEEE--------EccHHHHHHHHC-CC
Confidence 3465 78888888766665321 113321 34444 56677788888999998 567999999999 99
Q ss_pred CCCC------CHHHHHHHHHhhCceeecC
Q psy1330 131 QVNC------STADLKAKLSEVGCFIVGA 153 (221)
Q Consensus 131 ~~~~------s~~~~~~~l~~~g~~fl~a 153 (221)
++.. .-..+.+.+.+..+-|+-.
T Consensus 982 ~~~~v~~~~~~~~~i~~~i~~~~idlvIn 1010 (1066)
T PRK05294 982 PVELVNKVHEGRPHIVDLIKNGEIDLVIN 1010 (1066)
T ss_pred eeEEEeeccCcCccHHHHHHcCCeEEEEE
Confidence 8531 1134888888888887733
No 146
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.43 E-value=1.1e+02 Score=19.36 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHH
Q psy1330 18 SPGEIAKFVNLTVTGTAEDSQIG 40 (221)
Q Consensus 18 t~eEa~~~~~~il~g~~~~~Qi~ 40 (221)
|+|++..++..+.+|+++-.+.+
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA 23 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAA 23 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHH
Confidence 46777777777777776655544
No 147
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.41 E-value=2.4e+02 Score=20.22 Aligned_cols=60 Identities=5% Similarity=0.088 Sum_probs=44.8
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
++...++..+....-||.+|...+. ....+..|.-.++-.+..||..+- ..|.+++++..
T Consensus 15 ~~v~~ilD~L~~~~Vit~e~~~~I~----a~~T~~~kar~Lld~l~~kG~~A~--~~F~~~L~e~~ 74 (82)
T cd08330 15 TNVDPILDKLHGKKVITQEQYSEVR----AEKTNQEKMRKLFSFVRSWGASCK--DIFYQILREEE 74 (82)
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHH----cCCCcHHHHHHHHHHHHccCHHHH--HHHHHHHHHhC
Confidence 3455677777777889999876544 466778999999999999998764 35777777653
No 148
>PRK13236 nitrogenase reductase; Reviewed
Probab=25.36 E-value=62 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=28.0
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
++-+.|=||.|+. ++.-.|..+|..|.+|..-.
T Consensus 8 ~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 8 QIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5667899999995 77888899999999999864
No 149
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=25.31 E-value=2.2e+02 Score=27.64 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC--c--chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHh
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD--K--VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLE 125 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~--n--iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe 125 (221)
+.-+..|++|+.+....-.+. .+ ++ .||||+ | +.--+.-++|++|+.++..|.-+.+|+-..+.++-
T Consensus 34 e~~i~a~~Qai~d~~~~~~~~-~~-L~----vG~D~~~~se~a~~~~lev~aANgv~~iv~~~~g~~~TPAaSh~I~ 104 (524)
T COG0033 34 ENHILAFIQAIADYRAEGGIG-GP-LV----VGGDTHALSEPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAIL 104 (524)
T ss_pred HHHHHHHHHHHHHHHhccCCC-Cc-eE----ECCCcccccHHHHHHHHHHHHhcCceEEEecCCCccCchHHHHHHH
Confidence 455788999988774321111 11 22 378987 3 44556678999999999999999988877665543
No 150
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.20 E-value=2.1e+02 Score=30.25 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCC
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQ 131 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~ 131 (221)
.+| +|.+|++..+.+++ ... . +..+..|.++ -....+-.+...|+++. .+.||++.|+.- |++
T Consensus 919 ~~~--a~~ka~~~~~~~~p--~~~-~--~~~~~~~~~k~~~~~~~~~l~~~g~~~~--------at~gta~~l~~~-gi~ 982 (1050)
T TIGR01369 919 LAE--AFLKAQLSSGNRIP--KKG-S--VLLSVRDKDKEELLDLARKLAEKGYKLY--------ATEGTAKFLGEA-GIK 982 (1050)
T ss_pred HHH--HHHHHHHhCCCCcC--CCC-e--EEEEeccCchHHHHHHHHHHHHCCCEEE--------EechHHHHHHHC-CCc
Confidence 355 78888888775554 222 1 2223455554 67778888999999988 467999999999 997
Q ss_pred CCC------CHHHHHHHHHhhCceee
Q psy1330 132 VNC------STADLKAKLSEVGCFIV 151 (221)
Q Consensus 132 ~~~------s~~~~~~~l~~~g~~fl 151 (221)
+.. .-..+.+.+++..+.++
T Consensus 983 ~~~~~~~~~~~~~~~~~i~~~~i~lv 1008 (1050)
T TIGR01369 983 PELVLKVSEGRPNILDLIKNGEIELV 1008 (1050)
T ss_pred eEEEeecCCCCccHHHHHHcCCeEEE
Confidence 532 11347788888888777
No 151
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=25.13 E-value=1.7e+02 Score=27.72 Aligned_cols=72 Identities=15% Similarity=0.024 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHhh--------Cceeec-CCCcCCh--hhhhhHHHhhhh-C---CCCCchhHHHHhhhhhhhcCCCeE
Q psy1330 132 VNCSTADLKAKLSEV--------GCFIVG-ANKQLSP--GDQILYRVRDVT-A---TVDNLSLCSASILSKKVAEGTKYL 196 (221)
Q Consensus 132 ~~~s~~~~~~~l~~~--------g~~fl~-a~~~~~P--~~~~l~~lR~~l-g---Ti~~~~l~~asilskk~~~g~~~~ 196 (221)
-.++++|+.+.+++. +++|.+ ..+-++| .+..+..+|++. + +|..-.++.+..+.+=+..|.|++
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V 137 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHV 137 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeE
Confidence 457999988887752 234554 4334554 367778888775 3 333222323444443334689999
Q ss_pred EEeeecC
Q psy1330 197 VIDVKVG 203 (221)
Q Consensus 197 v~dv~~g 203 (221)
.||++--
T Consensus 138 ~islka~ 144 (442)
T TIGR01290 138 TITINAI 144 (442)
T ss_pred EEeccCC
Confidence 9999954
No 152
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Probab=25.06 E-value=1.2e+02 Score=23.52 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
+.||.+|...+++.+-+ .++-.++..+..-|.-..|+.++...-.
T Consensus 2 r~lt~~e~~~l~~~~~~-----~~~~~~~~l~~~tGlR~~E~~~l~~~di 46 (162)
T cd00800 2 RYLTDEEYRAIYEAADA-----PWLRCAMDLALLTGQRVGDVLRMKWSDI 46 (162)
T ss_pred CcCCHHHHHHHHHcCch-----hHHHHHHHHHHHHcCCHHHHHhCcHHHc
Confidence 57999999999988754 3444455666778999999998875433
No 153
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.05 E-value=5.7e+02 Score=24.75 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhCCCCC-----CCCCCCceeeccCCCCCC
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIA-LTKSMVDSGETLS-----WRPEDIVVDKHSTGGVGD 89 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g-~~~am~~~~~~~~-----~~~~~~~vD~~gtGGdg~ 89 (221)
........++.+.+++..+++.-.-.++-.++-+. +.++... +.+.+.+....++ .+. ..++=.+|..|.|+
T Consensus 192 ~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~-g~Vi~LvGpnGvGK 269 (484)
T PRK06995 192 QRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGD-DAEAALDWVQSALAKNLPVLDSEDALLDR-GGVFALMGPTGVGK 269 (484)
T ss_pred ccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHhhccCccccccC-CcEEEEECCCCccH
Confidence 34566677888888999999877777777665543 3333333 3333333322111 111 23778899999997
Q ss_pred cchhhHHHHHH----hCC-CcEEeecCCCCCCCCcHHHH----HhcCCCCCC
Q psy1330 90 KVSIPLVPALA----ACG-LKVPMVSGRGLDFSGGTLDK----LESIPGYQV 132 (221)
Q Consensus 90 niSt~~a~vlA----a~G-v~V~kHG~r~~ts~~GsaDv----Le~L~Gi~~ 132 (221)
. |+++.+++ ..| .+|..--.. +.+.|..+- -+.+ |+++
T Consensus 270 T--TTiaKLA~~~~~~~G~~kV~LI~~D--t~RigA~EQLr~~Aeil-GVpv 316 (484)
T PRK06995 270 T--TTTAKLAARCVMRHGASKVALLTTD--SYRIGGHEQLRIYGKIL-GVPV 316 (484)
T ss_pred H--HHHHHHHHHHHHhcCCCeEEEEeCC--ccchhHHHHHHHHHHHh-CCCe
Confidence 3 33333333 334 456543322 344554432 3445 6654
No 154
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=25.03 E-value=2.4e+02 Score=23.50 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHhCCCcEEeecCCCCCCCCc-----HHHHHhc-CCCCCC---CCCHHHHHHHHHhhCceeecCC---------CcC
Q psy1330 96 VPALAACGLKVPMVSGRGLDFSGG-----TLDKLES-IPGYQV---NCSTADLKAKLSEVGCFIVGAN---------KQL 157 (221)
Q Consensus 96 a~vlAa~Gv~V~kHG~r~~ts~~G-----saDvLe~-L~Gi~~---~~s~~~~~~~l~~~g~~fl~a~---------~~~ 157 (221)
+-.+..+|..++.-......+..| ..+.... . |+++ ..+.+++. .+.+.|+-|+... ...
T Consensus 81 v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~-~i~vi~~v~t~ee~~-~a~~~G~d~i~~~~~g~t~~~~~~~ 158 (221)
T PRK01130 81 VDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYP-GQLLMADCSTLEEGL-AAQKLGFDFIGTTLSGYTEETKKPE 158 (221)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCeEEEeCCCHHHHH-HHHHcCCCEEEcCCceeecCCCCCC
Confidence 456667788777655544322111 1233333 3 6664 34778875 5666787777331 013
Q ss_pred ChhhhhhHHHhhhhC-CCCCchhH-HHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 158 SPGDQILYRVRDVTA-TVDNLSLC-SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 158 ~P~~~~l~~lR~~lg-Ti~~~~l~-~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
.+....+..+|+.++ -+....-| .+.=+-+=+..|+|.++++ +++++..+-.+++-+.
T Consensus 159 ~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iG-----sai~~~~~~~~~~~~~ 218 (221)
T PRK01130 159 EPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVG-----GAITRPEEITKWFVDA 218 (221)
T ss_pred CcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc-----hHhcCCHHHHHHHHHH
Confidence 344566677777653 01111111 1222223345799999887 6788887777776554
No 155
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=25.01 E-value=1.4e+02 Score=26.33 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=49.2
Q ss_pred cCCCCCC-cchhhH-HHHHHhCCCcEEe-ecCCCC---------CCCCc-HHHHHhcCCCCCCCCCHHHHHHHHHhhCce
Q psy1330 83 STGGVGD-KVSIPL-VPALAACGLKVPM-VSGRGL---------DFSGG-TLDKLESIPGYQVNCSTADLKAKLSEVGCF 149 (221)
Q Consensus 83 gtGGdg~-niSt~~-a~vlAa~Gv~V~k-HG~r~~---------ts~~G-saDvLe~L~Gi~~~~s~~~~~~~l~~~g~~ 149 (221)
|=||.|+ +++.-. +.+++..|-+|.. =+.-+. .++.. -.|+|+. ..+.+++.-.....|+.
T Consensus 10 gKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~------~~~~~Di~~~~~~~gl~ 83 (262)
T COG0455 10 GKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAG------EASIEDIIYETPQDGLY 83 (262)
T ss_pred cCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhC------CCCHhHeeeecCcCCEE
Confidence 6688998 466666 4444444555232 222222 22111 2344443 23444444444346777
Q ss_pred eecCCCcCChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCC
Q psy1330 150 IVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEA 205 (221)
Q Consensus 150 fl~a~~~~~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~ 205 (221)
+++.. .-...+.++-+=+ +.-+...+ .+.. |+++||-+-|-+
T Consensus 84 vipg~-~~~~~~~~~~~~~--------~~~~~~~l-~~~~----D~iliD~~aGl~ 125 (262)
T COG0455 84 VLPGG-SGLEDLAKLDPED--------LEDVIKEL-EELY----DYILIDTGAGLS 125 (262)
T ss_pred EeeCC-CChHHHhhcCHHH--------HHHHHHHH-HhcC----CEEEEeCCCCcc
Confidence 77766 4444443332211 11122222 2211 999999887753
No 156
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=24.87 E-value=1.5e+02 Score=26.68 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.6
Q ss_pred eeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCC------CCcHHHHHhcCCCCCCCC
Q psy1330 79 VDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDF------SGGTLDKLESIPGYQVNC 134 (221)
Q Consensus 79 vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts------~~GsaDvLe~L~Gi~~~~ 134 (221)
..++++||-.-|.-..+|...+.+|+++.-.=...++. +.+....++.+ |.++..
T Consensus 68 ~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~-GA~v~~ 128 (337)
T PRK12390 68 DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIM-GADVRL 128 (337)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHC-CCEEEE
Confidence 34466777766888889999999999988763333332 24556688888 987643
No 157
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=24.80 E-value=1e+02 Score=25.28 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
++|.||..+.+-.+...-+++.|||..|
T Consensus 27 ~~~~eeve~~I~~lakkG~~pSqIG~~L 54 (151)
T PRK08561 27 DYSPEEIEELVVELAKQGYSPSMIGIIL 54 (151)
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhhH
Confidence 4799999999999998889999999887
No 158
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.71 E-value=4.6e+02 Score=22.66 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCc---HHH---HHh
Q psy1330 52 TNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGG---TLD---KLE 125 (221)
Q Consensus 52 t~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~G---saD---vLe 125 (221)
+|+++..+++.+++..... + ..+.+|+= +.....++.++.+..+|+.++--+--+++..+| +++ .|+
T Consensus 170 ~P~~v~~lv~~l~~~~~~~--~---i~l~~H~H--n~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~ 242 (268)
T cd07940 170 TPEEFGELIKKLKENVPNI--K---VPISVHCH--NDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALK 242 (268)
T ss_pred CHHHHHHHHHHHHHhCCCC--c---eeEEEEec--CCcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHH
Confidence 5777777777777643221 0 13555641 111255555565666788888666666665555 344 455
Q ss_pred cCCC----CCCCCCHHHHHHH
Q psy1330 126 SIPG----YQVNCSTADLKAK 142 (221)
Q Consensus 126 ~L~G----i~~~~s~~~~~~~ 142 (221)
.+ | ++...+.+.+.+.
T Consensus 243 ~~-~~~~~~~t~idl~~l~~~ 262 (268)
T cd07940 243 TR-YDYYGVETGIDTEELYET 262 (268)
T ss_pred hc-ccccCCCCCcCHHHHHHH
Confidence 56 5 7766676666544
No 159
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=24.67 E-value=2.9e+02 Score=24.86 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=45.9
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
.+=+.|+|.-|+ .+|-.+.+.|.+|.-+.-.. ... +|+....+.++..+.+.+..+..+..| .
T Consensus 138 tvgIvG~G~IG~----~vA~~l~afG~~V~~~~~~~-~~~----------~~~~~~~~~~~l~e~l~~aDvvv~~lP--l 200 (312)
T PRK15469 138 TIGILGAGVLGS----KVAQSLQTWGFPLRCWSRSR-KSW----------PGVQSFAGREELSAFLSQTRVLINLLP--N 200 (312)
T ss_pred EEEEECCCHHHH----HHHHHHHHCCCEEEEEeCCC-CCC----------CCceeecccccHHHHHhcCCEEEECCC--C
Confidence 456677765553 45777788999987654211 110 122222356678899999999999887 6
Q ss_pred ChhhhhhH
Q psy1330 158 SPGDQILY 165 (221)
Q Consensus 158 ~P~~~~l~ 165 (221)
.|.-+++.
T Consensus 201 t~~T~~li 208 (312)
T PRK15469 201 TPETVGII 208 (312)
T ss_pred CHHHHHHh
Confidence 77766554
No 160
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=24.61 E-value=62 Score=29.69 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=28.6
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGL 114 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ 114 (221)
+|=+.||.|+|. ++...+-++.++|++|-.+++..+
T Consensus 20 vI~VtGTNGKgS-t~~~l~~iL~~~g~~vg~~tSphl 55 (397)
T TIGR01499 20 VIHVAGTNGKGS-TCAFLESILRAAGYKVGLFTSPHL 55 (397)
T ss_pred EEEEeCCCChHH-HHHHHHHHHHHcCCCeeEEeCCCc
Confidence 788899988774 455566677889999999998765
No 161
>PRK06110 hypothetical protein; Provisional
Probab=24.59 E-value=1.2e+02 Score=27.19 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=44.5
Q ss_pred cchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC---CH----HHHHHHHHhhCceeecCCCcCChh
Q psy1330 90 KVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC---ST----ADLKAKLSEVGCFIVGANKQLSPG 160 (221)
Q Consensus 90 niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~---s~----~~~~~~l~~~g~~fl~a~~~~~P~ 160 (221)
|....+|...+..|+++.-.=.+..+. -..+.++.+ |.++-. +. +.+.+..++.|..|+ + .|+|.
T Consensus 80 N~g~alA~~a~~~G~~~~ivvp~~~~~--~k~~~i~~~-GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~ 151 (322)
T PRK06110 80 NHGQSVAFAARRHGLAATIVVPHGNSV--EKNAAMRAL-GAELIEHGEDFQAAREEAARLAAERGLHMV--P-SFHPD 151 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCH--HHHHHHHHc-CCEEEEECCCHHHHHHHHHHHHHhcCCEEc--C-CCCCh
Confidence 778899999999999998887665432 245889999 988732 22 345555666675444 3 36663
No 162
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.47 E-value=6.9e+02 Score=25.05 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=40.7
Q ss_pred ceeec-cCCCCCCc-chhhHHHHHHhCCCcEEeecCCC----------CCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 78 VVDKH-STGGVGDK-VSIPLVPALAACGLKVPMVSGRG----------LDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 78 ~vD~~-gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~----------~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
+|=+. ..||.|+. ++.-.|..+|..|.+|+.--.+- .....|-.|+|.. ..+++++...-..
T Consensus 548 vi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~------~~~~~~~i~~~~~ 621 (754)
T TIGR01005 548 VVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAG------LRSLLLDLTASGA 621 (754)
T ss_pred EEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcC------CccHHHHhccCCC
Confidence 44444 44888985 77778888899999998754332 2233344455432 1233333222223
Q ss_pred hCceeecCC
Q psy1330 146 VGCFIVGAN 154 (221)
Q Consensus 146 ~g~~fl~a~ 154 (221)
.|+.+++++
T Consensus 622 ~~l~~l~~g 630 (754)
T TIGR01005 622 ASLPMLDSG 630 (754)
T ss_pred CCeeEecCC
Confidence 577788765
No 163
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=24.35 E-value=1e+02 Score=21.99 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=25.1
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGL 51 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kge 51 (221)
.++++|.+-.....||++|..+++... ..++.|+=.++..+.-.|-
T Consensus 8 ~i~~Li~~gK~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~~~gI 53 (82)
T PF03979_consen 8 AIKKLIEKGKKKGYLTYDEINDALPED---DLDPEQIDEIYDTLEDEGI 53 (82)
T ss_dssp HHHHHHHHHHHHSS-BHHHHHHH-S-S------HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHHHCCC
Confidence 356666665555569999988877632 3666666666666655553
No 164
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=24.34 E-value=2.9e+02 Score=25.14 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=62.4
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC----CCCCCC-----
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG----ETLSWR----- 73 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~----~~~~~~----- 73 (221)
+..+++..+.+| +.+..|.-.++-.+--...|+.++++|+-+++-+....+.....++-. ..+ .++++.
T Consensus 20 Ea~~~~~~il~g-~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~~~iDi~-gtggdg~~t~nis~~~a~ 97 (339)
T PRK00188 20 EAEELMDAIMSG-EATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPDDAVDIV-GTGGDGANTFNISTAAAF 97 (339)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCCccc-CCCCCCCCccchHHHHHH
Confidence 456777778876 568889888888887666799999999999998876432110011111 111 122221
Q ss_pred ---CCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEe
Q psy1330 74 ---PEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPM 108 (221)
Q Consensus 74 ---~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~k 108 (221)
.....|=+||.-+...+.. ++=++.++|+++..
T Consensus 98 vlA~~G~~V~kHG~~~~~s~~G--sadvLe~lGi~~~~ 133 (339)
T PRK00188 98 VAAAAGVKVAKHGNRSVSSKSG--SADVLEALGVNLDL 133 (339)
T ss_pred HHHhCCCEEEEECCCCCCCCcC--HHHHHHHcCCCCCC
Confidence 0011356677545444422 45689999999853
No 165
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=24.32 E-value=3.3e+02 Score=21.36 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEET 56 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl 56 (221)
.++.++..++++.+.+|+.|..+.--+|-.+.-.+.+++|+
T Consensus 39 ~i~~~~l~~li~l~~~~~Is~~~ak~ll~~~~~~~~~~~~i 79 (148)
T PF02637_consen 39 PISPEHLAELINLLEDGKISKKSAKELLRELLENGKSPEEI 79 (148)
T ss_dssp SSTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTS-HHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 46777777777777777777777777776666556666544
No 166
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=24.27 E-value=2.1e+02 Score=20.92 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=28.0
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLM 44 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~ 44 (221)
+++++|++..+-++-+.-|+-+.+..-++..-.|.|++-.|.
T Consensus 5 ~LR~~Ir~~L~ER~~NT~EI~~~~~~~M~~~s~Pe~~~NiL~ 46 (92)
T PF12976_consen 5 NLRDLIRNYLSERPRNTIEISAWLASQMDPNSCPEDVTNILE 46 (92)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhccCCCCCHHHHHHHHh
Confidence 456777777777666666666666666666666666666554
No 167
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=24.24 E-value=2.7e+02 Score=21.97 Aligned_cols=18 Identities=6% Similarity=0.016 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHHHHhcC
Q psy1330 15 NELSPGEIAKFVNLTVTG 32 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g 32 (221)
..+|.+.+++++..++++
T Consensus 54 g~It~~~ak~vl~~~~~~ 71 (147)
T smart00845 54 GTISGKIAKEVLEELLES 71 (147)
T ss_pred CCCcHHHHHHHHHHHHHc
Confidence 345555555555555544
No 168
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.80 E-value=74 Score=29.04 Aligned_cols=36 Identities=33% Similarity=0.406 Sum_probs=27.6
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCC
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRG 113 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~ 113 (221)
++=.+|=||.|+. ++-+.|..+|+.|.+|..-+-..
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 3456889999985 77777799999998887765543
No 169
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=23.59 E-value=1.8e+02 Score=18.03 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=33.7
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
.+-+.|+..+....+|++|..+.+. +++..++.+.-.- ...+.+++..+++++
T Consensus 2 ~~~~~l~~~r~~~gltq~~lA~~~g------vs~~~vs~~e~g~--~~~~~~~~~~i~~~l 54 (58)
T TIGR03070 2 QIGMLVRARRKALGLTQADLADLAG------VGLRFIRDVENGK--PTVRLDKVLRVLDAL 54 (58)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHCCC--CCCCHHHHHHHHHHc
Confidence 3556778888888899988887664 5666666655331 124566666655543
No 170
>PLN02735 carbamoyl-phosphate synthase
Probab=23.42 E-value=3e+02 Score=29.37 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=61.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC--
Q psy1330 58 ALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC-- 134 (221)
Q Consensus 58 g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~-- 134 (221)
+|.+|+...+.+++-.. ..++-+ +|.++ -....+-.+...|++|. ++.||++.|+.. |+++..
T Consensus 957 a~~ka~~~~~~~~p~~g-~vliSv----~d~~K~~~~~~a~~L~~lG~~i~--------aT~GTa~~L~~~-Gi~~~~v~ 1022 (1102)
T PLN02735 957 AFAKAQIAAGQRLPLSG-TVFISL----NDLTKPHLVPIARGFLELGFRIV--------STSGTAHFLELA-GIPVERVL 1022 (1102)
T ss_pred HHHHHHhcCCCccCCCC-eEEEEE----ecCCchhHHHHHHHHHHCCCEEE--------EccHHHHHHHHC-CCceEEEe
Confidence 67788777666654221 113332 34443 56677888899999998 567999999999 998531
Q ss_pred ----CHHHHHHHHHhhCceeec-CCCcCChhhhhhHHHhh
Q psy1330 135 ----STADLKAKLSEVGCFIVG-ANKQLSPGDQILYRVRD 169 (221)
Q Consensus 135 ----s~~~~~~~l~~~g~~fl~-a~~~~~P~~~~l~~lR~ 169 (221)
.-..+.+.+++..+-++- .|....+....=+.+||
T Consensus 1023 ~~~~~~~~~~~~i~~~~i~~vin~~~~~~~~~~d~~~iRr 1062 (1102)
T PLN02735 1023 KLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQLRR 1062 (1102)
T ss_pred eccCCCccHHHHHHcCCeEEEEECCCCccccccccHHHHH
Confidence 124588888888887773 22111111333456665
No 171
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=23.29 E-value=1.6e+02 Score=26.33 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=26.7
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+-+-|-||-|+. +|-=.+.-+|..|.+|..||..
T Consensus 4 iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCD 38 (278)
T COG1348 4 IAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCD 38 (278)
T ss_pred EEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCC
Confidence 567788999985 5555666677889999999965
No 172
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=23.25 E-value=83 Score=21.73 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q psy1330 15 NELSPGEIAKFVNLTVTGTA 34 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~ 34 (221)
++||.+|++.+|+.|.+..+
T Consensus 24 ~~lt~~~V~~~m~~ii~~~v 43 (69)
T PF11148_consen 24 EDLTEAEVKAAMQAIIAKKV 43 (69)
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 57888888888888887654
No 173
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.18 E-value=51 Score=24.43 Aligned_cols=67 Identities=21% Similarity=0.140 Sum_probs=41.5
Q ss_pred ceeeccCCCCCCcchhhHHHH---HHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC-----CHHHHHHHHHh
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPA---LAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC-----STADLKAKLSE 145 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~v---lAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~-----s~~~~~~~l~~ 145 (221)
++|+-|+=..|....+-+.-. +...|.++.-..|.+.-++..-.+.|+.+ |++++. +...+.+.|.+
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TTT--GGGEEEHHHHHHHHHHH
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-CcCCCcCEEEChHHHHHHHHHh
Confidence 356666655566544444433 34569999999999766656677888999 998653 44556666666
No 174
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.16 E-value=1.9e+02 Score=25.64 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred ceeeccCCCCCCc-chhh-HHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCC-CCCHHHHHHHHHh
Q psy1330 78 VVDKHSTGGVGDK-VSIP-LVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQV-NCSTADLKAKLSE 145 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~-~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~-~~s~~~~~~~l~~ 145 (221)
.|-+||-||.|+. ++.+ +.-+++..|+.|.--=... .. ++=++| |+.. .-+.-+..+.+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp---d~---nL~~~L-Gve~~~~~lg~~~e~~~k 65 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP---DS---NLPEAL-GVEEPMKYLGGKRELLKK 65 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC---CC---ChHHhc-CCCCCCcccccHHHHHHH
Confidence 3668999999985 5555 4455556668887543332 11 233455 6655 3344455555554
No 175
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.13 E-value=1.3e+02 Score=26.38 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHhhCceeecCCCcCChhhhhh-HHHh---hhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCC
Q psy1330 133 NCSTADLKAKLSEVGCFIVGANKQLSPGDQIL-YRVR---DVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVKVGEAS 206 (221)
Q Consensus 133 ~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l-~~lR---~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~~g~~a 206 (221)
.++-..+.+++...|+-|+.....+.|-...- ..+- +..| .+=-+|..-...+.+-+-+|++.|++ -
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giiv-------P 98 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLI-------P 98 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeee-------c
Confidence 33334566667777776665544455543221 1111 1222 11112444455666777889999987 4
Q ss_pred CCCCHHHHHHHHHh
Q psy1330 207 FFKTYEKAKEMAEL 220 (221)
Q Consensus 207 ~~~~~~~a~~la~~ 220 (221)
.++|.+||+++.+.
T Consensus 99 ~v~tae~a~~~v~a 112 (256)
T PRK10558 99 FVETAEEARRAVAS 112 (256)
T ss_pred CcCCHHHHHHHHHH
Confidence 68899999998765
No 176
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=23.11 E-value=72 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.6
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
|=+.|-||.|+. ++.-.|..+|..|.+|..-...
T Consensus 3 Iav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~D 37 (296)
T TIGR02016 3 IAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCD 37 (296)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 344588999985 8888889999999999886644
No 177
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=22.65 E-value=2.6e+02 Score=27.96 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=56.1
Q ss_pred cCCCCHHHHHHHHHHHH------------ccC--CCHHHHHHHHHHHHhhCCCCCCCCCCCceeec-cCCC-CCC-----
Q psy1330 31 TGTAEDSQIGAMLMAMF------------ING--LTNEETIALTKSMVDSGETLSWRPEDIVVDKH-STGG-VGD----- 89 (221)
Q Consensus 31 ~g~~~~~Qi~AfL~alr------------~kg--et~eEl~g~~~am~~~~~~~~~~~~~~~vD~~-gtGG-dg~----- 89 (221)
.+.+|..-++|+|++-- ..| .+..++.-..+.|++++..+.+.... .+-+. +... .+.
T Consensus 403 ~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t~~~L~~fG~~V~~~~~~-~i~V~~~~~~~~~~~~~V~ 481 (673)
T PRK11861 403 RGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGWQ-RFTVPAGVRYRSPGTIMVE 481 (673)
T ss_pred CCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHHHHHHHHCCCEEEEcCCc-EEEEcCCcccCCCceeECC
Confidence 44556666777777632 223 24566777899999999887654221 23332 2111 111
Q ss_pred -cchhhHHHHHHhC--CCcEEeecCCCCCCC--CcHHHHHhcCCCCCCCC
Q psy1330 90 -KVSIPLVPALAAC--GLKVPMVSGRGLDFS--GGTLDKLESIPGYQVNC 134 (221)
Q Consensus 90 -niSt~~a~vlAa~--Gv~V~kHG~r~~ts~--~GsaDvLe~L~Gi~~~~ 134 (221)
.+|.++-++++++ |-+|...|-...+.+ ..-.|+|+.+ |++++.
T Consensus 482 ~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d~~i~~iL~~m-Ga~i~~ 530 (673)
T PRK11861 482 GDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQM-GANVTM 530 (673)
T ss_pred CChHHHHHHHHHHHhcCCeEEECCCCCCCCchHHHHHHHHHHc-CCcEEE
Confidence 1454444444442 445665564433322 2345899999 998864
No 178
>KOG1097|consensus
Probab=22.62 E-value=1.9e+02 Score=27.37 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCcc
Q psy1330 13 SGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDKV 91 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~ni 91 (221)
+|. +|.|+.-..+..-++.-..+.=|++.|+---.|+++.|.....+....+.....+ ..-.-+|.+|-- ++|...
T Consensus 151 ~G~-~t~e~~v~~~~~~~e~~~~~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~--~~VvGidL~G~e~~~~p~~ 227 (399)
T KOG1097|consen 151 DGD-ITPEDVVAIVIAALEKAKRDFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFP--NFVVGIDLVGQEDLGGPLS 227 (399)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCC--CeEEEEecCCCCCCCCChh
Confidence 355 8888877777666644333333889998889999998887776666665433322 111137777765 333333
Q ss_pred hhhHHH-HHHhCCCcEEeecCCC
Q psy1330 92 SIPLVP-ALAACGLKVPMVSGRG 113 (221)
Q Consensus 92 St~~a~-vlAa~Gv~V~kHG~r~ 113 (221)
...-++ ..++-|++..-|.+.-
T Consensus 228 ~f~~vl~~~~~~gi~~t~HaGE~ 250 (399)
T KOG1097|consen 228 LFLEVLAKAPAKGIHLTFHAGET 250 (399)
T ss_pred hhHHHHHhhhhcCCcEEEEcccc
Confidence 333333 3334899999999875
No 179
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=22.60 E-value=2.1e+02 Score=20.65 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHhcCCCCHHHHHH
Q psy1330 4 IIELLRKKRS-GNELSPGEIAKFVNLTVTGTAEDSQIGA 41 (221)
Q Consensus 4 ~~~~i~k~~~-g~~Lt~eEa~~~~~~il~g~~~~~Qi~A 41 (221)
|..+|+.+.. |..++..|+.+.+.... +.+|.+..-
T Consensus 6 ~~piL~~L~~~g~~~~~~ei~~~v~~~~--~ls~e~~~~ 42 (92)
T PF14338_consen 6 MPPILEALKDLGGSASRKEIYERVAERF--GLSDEERNE 42 (92)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHh--CCCHHHHHH
Confidence 5678888888 99999999999998887 478876553
No 180
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=22.57 E-value=74 Score=21.80 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhhC
Q psy1330 52 TNEETIALTKSMVDSG 67 (221)
Q Consensus 52 t~eEl~g~~~am~~~~ 67 (221)
|.|||++++-.+....
T Consensus 12 t~eElAAL~aVlaa~~ 27 (62)
T PF13822_consen 12 TDEELAALTAVLAARA 27 (62)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6777777777666554
No 181
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=22.42 E-value=70 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.9
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
+=++|=||.|+. ++.-.|..+|..|.+|..-.
T Consensus 4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 444588999985 77888899999999998863
No 182
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=22.40 E-value=1.5e+02 Score=26.29 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhh-----HHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeee
Q psy1330 129 GYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQIL-----YRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVK 201 (221)
Q Consensus 129 Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l-----~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~ 201 (221)
|.-+.++-..+.+++...||-|+.....+.|-...- ..++ ..| .+=-+|.--+..+.+-+-+|++.|++
T Consensus 21 G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~-~~g~~~lVRvp~~~~~~i~r~LD~GA~GIiv--- 96 (267)
T PRK10128 21 GLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIA-PYASQPVIRPVEGSKPLIKQVLDIGAQTLLI--- 96 (267)
T ss_pred EEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHH-hcCCCeEEECCCCCHHHHHHHhCCCCCeeEe---
Confidence 443444445677777888887775544566654322 2222 233 12122444556667888899999997
Q ss_pred cCCCCCCCCHHHHHHHHHh
Q psy1330 202 VGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 202 ~g~~a~~~~~~~a~~la~~ 220 (221)
-.++|.+||+++.+.
T Consensus 97 ----P~V~saeeA~~~V~a 111 (267)
T PRK10128 97 ----PMVDTAEQARQVVSA 111 (267)
T ss_pred ----cCcCCHHHHHHHHHh
Confidence 357899999998764
No 183
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=22.31 E-value=1.2e+02 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 37 SQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 37 ~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
.++++--+|-.++|.|++|+..+.
T Consensus 32 ~~~~~~~iA~~i~gks~eeir~~f 55 (78)
T PF01466_consen 32 LDLCCKYIANMIKGKSPEEIRKYF 55 (78)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHc
Confidence 578888899999999999998765
No 184
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=22.27 E-value=99 Score=29.79 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=69.8
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC
Q psy1330 12 RSGNELSPGEIAKFVNLTVTGTAEDS--QIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD 89 (221)
Q Consensus 12 ~~g~~Lt~eEa~~~~~~il~g~~~~~--Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~ 89 (221)
..|..++.++.-+++...++.-..+. -+++=|+.--.|..+++++...++-..++.... +..-.=+|.+|--..|.
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~~R~~~~~~~~~~~~~a~~~k~~~--p~~vvGfDL~G~E~~g~ 303 (479)
T TIGR01431 226 LEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSPLRNKDKEELDNYIKVAMELKEKY--PDFVAGFDLVGQEDKGR 303 (479)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCCHHHHHHHHHHHHHHHhhC--CCeEEEEeccCCCCCCC
Confidence 34667788776666655543211111 134435555566778887777766666543322 21111267766433354
Q ss_pred cchhhHHH-H-HHh-CCCcEEeecCCCCCC-CCc---HHHHHhcCC------CCCCCCCHHHHHHHHHhhCce
Q psy1330 90 KVSIPLVP-A-LAA-CGLKVPMVSGRGLDF-SGG---TLDKLESIP------GYQVNCSTADLKAKLSEVGCF 149 (221)
Q Consensus 90 niSt~~a~-v-lAa-~Gv~V~kHG~r~~ts-~~G---saDvLe~L~------Gi~~~~s~~~~~~~l~~~g~~ 149 (221)
..+..+-. . .+. .|+++.-|.+..... ..+ ..|.+ .|- |+.+.-.| ++.+.+.+.+|+
T Consensus 304 pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~~RIGHG~~l~~~P-~l~~~vke~~I~ 374 (479)
T TIGR01431 304 SLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNTTRIGHGFALVKHP-LVLQMLKERNIA 374 (479)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCCccccCcccccCCH-HHHHHHHHhCCe
Confidence 43333322 2 233 899999999976421 112 23444 340 44444444 455556666765
No 185
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=22.21 E-value=3.1e+02 Score=19.78 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-CCHHHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING-LTNEETIALTKSMV 64 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg-et~eEl~g~~~am~ 64 (221)
+.++..+..++++.+-....++.++..+-.+.+.+. .|.+++..+.+.+.
T Consensus 3 ~~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~~~T~~Qv~~il~~f~ 53 (95)
T PF14771_consen 3 RPMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNNCFTCAQVKQILSLFS 53 (95)
T ss_pred CCCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCceeHHHHHHHHHHcC
Confidence 467888999999999999999999999999888888 89999988877554
No 186
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=21.99 E-value=2.8e+02 Score=19.15 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHh
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~ 65 (221)
...++..+...+-||.+|...+-. ..-+..+...||-.+..||+. -...|.+++++
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~----~~t~~~k~~~LLd~l~~kg~~--a~~~F~~~L~~ 73 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRS----EPTRQDKARKLLDILKRKGPE--AFDIFCQALRE 73 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHT----SSSHHHHHHHHHHHHHHCCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc----cCChHHHHHHHHHHHHHHCHH--HHHHHHHHHHh
Confidence 556777888889999999877654 444667888999998889864 35567777776
No 187
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=21.88 E-value=1.5e+02 Score=25.83 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhh-hHHHh---hhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeeec
Q psy1330 129 GYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQI-LYRVR---DVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVKV 202 (221)
Q Consensus 129 Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~-l~~lR---~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~~ 202 (221)
|+-+.++-..+.+++...||-|+.....+.|-... +..+- +.-| .+=-+|.--+..+.+-+-+|++.|++
T Consensus 15 G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIiv---- 90 (249)
T TIGR03239 15 GCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLI---- 90 (249)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEe----
Confidence 33334444466777777788776554445554322 11111 1122 11112344555667777889999987
Q ss_pred CCCCCCCCHHHHHHHHHh
Q psy1330 203 GEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 203 g~~a~~~~~~~a~~la~~ 220 (221)
-.++|.+||+++.+.
T Consensus 91 ---P~v~taeea~~~v~a 105 (249)
T TIGR03239 91 ---PFVESAEEAERAVAA 105 (249)
T ss_pred ---cCcCCHHHHHHHHHH
Confidence 468899999998765
No 188
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.81 E-value=2.3e+02 Score=24.08 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=46.7
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHhh---------CceeecCCCcCChhh-hhhHHHhhhhC---CCCCchhHHHHhhhhh
Q psy1330 122 DKLESIPGYQVNCSTADLKAKLSEV---------GCFIVGANKQLSPGD-QILYRVRDVTA---TVDNLSLCSASILSKK 188 (221)
Q Consensus 122 DvLe~L~Gi~~~~s~~~~~~~l~~~---------g~~fl~a~~~~~P~~-~~l~~lR~~lg---Ti~~~~l~~asilskk 188 (221)
+.++.. |- ..+++++.+.+.+. |++|=+..+..+|.. ..+...=++.| +++.-.......+ ++
T Consensus 10 ~a~~~~-g~--~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~-~~ 85 (213)
T PRK10076 10 GAFERI-GR--DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKL-LP 85 (213)
T ss_pred hHHHhc-Cc--ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH-HH
Confidence 445555 54 36899998888764 777877766777763 45544444556 2211111111111 34
Q ss_pred hhcCCCeEEEeeecCC
Q psy1330 189 VAEGTKYLVIDVKVGE 204 (221)
Q Consensus 189 ~~~g~~~~v~dv~~g~ 204 (221)
+.--.|.+.+|+|--+
T Consensus 86 l~~~~D~~l~DiK~~d 101 (213)
T PRK10076 86 LAKLCDEVLFDLKIMD 101 (213)
T ss_pred HHHhcCEEEEeeccCC
Confidence 4557899999999653
No 189
>PRK09871 tyrosine recombinase; Provisional
Probab=21.68 E-value=1.8e+02 Score=23.51 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy1330 14 GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61 (221)
Q Consensus 14 g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~ 61 (221)
.+-||.+|...+++.+-......... +++..+..-|.-..|+.++.-
T Consensus 4 ~~~Lt~~Ei~~ll~~~~~~~~~~r~~-~l~~l~~~tGlR~sEl~~L~~ 50 (198)
T PRK09871 4 RRYLTGKEVQAMMQAVCYGATGARDY-CLILLAYRHGMRISELLDLHY 50 (198)
T ss_pred cccCCHHHHHHHHHHhccCCccchhH-HHHHHHHHhCCcHHHHHcCCH
Confidence 36799999999999886543333233 334444556999999988764
No 190
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=21.67 E-value=1.4e+02 Score=29.67 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=53.6
Q ss_pred eecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhhCCCCCchhHHHHhhhh
Q psy1330 108 MVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSK 187 (221)
Q Consensus 108 kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lgTi~~~~l~~asilsk 187 (221)
+.|..++. ||+-+-..-.++.+.+++.|+.|+..| -..|| .+| --+.+|
T Consensus 72 ~tGA~AIH------------PGYGFLSENa~FA~a~~~aGlvfIGP~---------~~aI~-aMG---------dK~~AK 120 (645)
T COG4770 72 RTGAQAIH------------PGYGFLSENADFAQAVEDAGLVFIGPS---------AGAIR-AMG---------DKIAAK 120 (645)
T ss_pred HhCccccc------------CCccccccCHHHHHHHHHCCcEEECCC---------HHHHH-Hhc---------cHHHHH
Confidence 56777776 588887778889999999999999777 22333 333 235678
Q ss_pred hhhcCCCeEEEeeecCCCCC--CCCHHHHHHHHH
Q psy1330 188 KVAEGTKYLVIDVKVGEASF--FKTYEKAKEMAE 219 (221)
Q Consensus 188 k~~~g~~~~v~dv~~g~~a~--~~~~~~a~~la~ 219 (221)
|+++.+ +||+=||-. +++.+++.+.|+
T Consensus 121 ~l~~~A-----gVp~VPG~~g~~qd~~~~~~~A~ 149 (645)
T COG4770 121 KLAAEA-----GVPTVPGYHGPIQDAAELVAIAE 149 (645)
T ss_pred HHHHHc-----CCCccCCCCCcccCHHHHHHHHH
Confidence 888765 577777766 566666666664
No 191
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=21.63 E-value=2.2e+02 Score=27.31 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTN 53 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~ 53 (221)
+..+++.+.+| .++..|...++-.+.-...|+.++++|.-+|+-.+++.
T Consensus 22 ~~~~~~~i~~G-~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i 70 (440)
T PRK05820 22 IDWFIDGYTDG-TVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVL 70 (440)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcC
Confidence 33444444444 34555555555555555566666666666666666654
No 192
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=21.49 E-value=1.7e+02 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=20.0
Q ss_pred hhHHHHhhhhhhhcCCCeEEEeeecCCCCCC
Q psy1330 178 SLCSASILSKKVAEGTKYLVIDVKVGEASFF 208 (221)
Q Consensus 178 ~l~~asilskk~~~g~~~~v~dv~~g~~a~~ 208 (221)
|-+-+.++.-=+..|++.+||-= +|.|..=
T Consensus 219 pG~~~~~l~~~~~~~~~GiVl~~-~G~Gn~p 248 (335)
T PRK09461 219 PGISAEVVRNFLRQPVKALILRS-YGVGNAP 248 (335)
T ss_pred CCCCHHHHHHHHhCCCCEEEEcc-CCCCCCC
Confidence 33445555555567899999975 7887764
No 193
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.44 E-value=2.5e+02 Score=21.78 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 4 IIELLRKKRS---GNELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 4 ~~~~i~k~~~---g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
+-++|+++.- ...-+..+..++++.+-+|+.|..+....|
T Consensus 70 Ld~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 70 LDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred HHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCHHHHHHHh
Confidence 4567777777 355677888889999999999888765543
No 194
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=21.31 E-value=4.8e+02 Score=21.65 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCC-CCce--eeccCCCCCCcch
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPE-DIVV--DKHSTGGVGDKVS 92 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~-~~~v--D~~gtGGdg~niS 92 (221)
.|+-+. ...+--+++|.-|-.|+-+-|.. +-+.+++..+.+.|.+.+.-.+.... +.-. =|...|.+.
T Consensus 26 ~l~~~~-~~~L~~lLdG~rt~~eI~~~l~~----~~p~~~v~~~L~~L~~~G~l~~~~~~~~~~~~~f~~~~g~~~---- 96 (193)
T TIGR03882 26 ALSGAL-YCQLAPLLDGRRTLDEIIAALAG----RFPAEEVLYALDRLERRGYLVEDAPELPPAAAAFWSGLGVDP---- 96 (193)
T ss_pred EEcchh-HHHHHHHHcCCCCHHHHHHHhhc----cCCHHHHHHHHHHHHHCCCEeccCCCCCHHHHHHHHHcCCCH----
Confidence 355333 44444588888888888776655 24588888888888887754332110 0000 022222211
Q ss_pred hhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhh
Q psy1330 93 IPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQIL 164 (221)
Q Consensus 93 t~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l 164 (221)
..+.--+.+.-|.|.-||+-+.. - -++.|.++ |+.+.. ++..+..+....+..|.+..+
T Consensus 97 ~~a~~~l~~~~V~V~~~G~~~~~--~-l~~aLaa~-Gv~~~~---------~~a~l~vVl~~Dyl~p~L~~~ 155 (193)
T TIGR03882 97 AAALERLRQLTVTVLSFGEGGAA--A-LAAALAAA-GIRIAP---------SEADLTVVLTDDYLDPELAAI 155 (193)
T ss_pred HHHHHHHhcCcEEEEecCCCcHH--H-HHHHHHHc-CCCccC---------CCCCEEEEEeCCCCChHHHHH
Confidence 22234455567777777765321 1 34558888 887653 344555554443557777665
No 195
>PF12977 DUF3861: Domain of Unknown Function with PDB structure (DUF3861); InterPro: IPR024476 This entry represents a family of proteins of unknown function which are found predominantly in the proteobacteria. The structurally characterised member of this family (Q6D5X8 from SWISSPROT) adopts a novel fold consisting of a long N-terminal beta-hairpin followed by three alpha helices. This structure shows some resemblance to three-helical bundle folds such as the serum albumin-like fold.; PDB: 3CJL_B.
Probab=21.13 E-value=1.6e+02 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKF 25 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~ 25 (221)
+..++.++.+...|+.+|+..+
T Consensus 34 i~~Ive~v~~k~~~~~~~a~af 55 (94)
T PF12977_consen 34 IFEIVERVKQKGDFDEDEAAAF 55 (94)
T ss_dssp HHHHHHHHTTTSSS-HHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 4455555555555555555443
No 196
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=21.12 E-value=1.7e+02 Score=28.71 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhH
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIGAMLMAMF-INGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPL 95 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr-~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~ 95 (221)
-+++|+.+.+..+..+.. ..-+ -.....+++..+.+.+ +.+-+....+ +|=+.||.|+|. ++..+
T Consensus 14 ~~y~~a~~~L~sl~~~~~---------~~~~~~~~~~L~rm~~~L~~L---G~p~~~~~l~-vIhVaGTnGKGS-t~a~l 79 (530)
T PLN02881 14 DSYEEALDALSSLITKKS---------RADPSNPGDQFDLLFDYLKIL---ELEEAISRLK-VIHVAGTKGKGS-TCTFT 79 (530)
T ss_pred cCHHHHHHHHHhcccchh---------hccccccCCChHHHHHHHHHc---CCCchhhcCC-EEEEeCCCCHHH-HHHHH
Confidence 367777776666544411 0000 0124455655444443 3332222223 788899988774 45666
Q ss_pred HHHHHhCCCcEEeecCCC
Q psy1330 96 VPALAACGLKVPMVSGRG 113 (221)
Q Consensus 96 a~vlAa~Gv~V~kHG~r~ 113 (221)
.-++.++|++|-..++..
T Consensus 80 ~siL~~~G~rvGl~tSPh 97 (530)
T PLN02881 80 ESILRNCGFRTGLFTSPH 97 (530)
T ss_pred HHHHHHCCCCEEEECCCc
Confidence 777888999999888776
No 197
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=21.04 E-value=1.5e+02 Score=21.55 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=12.1
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHh
Q psy1330 5 IELLRKKRS-GNELSPGEIAKFVNLTV 30 (221)
Q Consensus 5 ~~~i~k~~~-g~~Lt~eEa~~~~~~il 30 (221)
.++++.+.. .-.+|+.++..+++.++
T Consensus 4 ~eli~~ia~~~~~~s~~~~~~vv~~~~ 30 (94)
T PRK00199 4 SELIERLAARNPHLSAKDVENAVKEIL 30 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344444443 23455555555554443
No 198
>PRK08136 glycosyl transferase family protein; Provisional
Probab=21.03 E-value=3e+02 Score=25.02 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHH---HHHHHHHHHHhhC---CCCCCCC---
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNE---ETIALTKSMVDSG---ETLSWRP--- 74 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~e---El~g~~~am~~~~---~~~~~~~--- 74 (221)
..+..+.+.+| +.|..|...++-.+--..-|+.++++|+-++|-+-...+ .....++-. -++ ..++++.
T Consensus 25 A~~~~~~il~g-~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~-gtgGd~~t~nist~aA 102 (317)
T PRK08136 25 ARALYGAMLDG-RVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIP-SYNGARKQANLTPLLA 102 (317)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCCceEEeC-CCCCCCCCcChHHHHH
Confidence 45566666665 458889999998888778899999999999995553221 000000000 010 1222220
Q ss_pred ----CCC-ceeeccCCCCCCcchhhHHHHHHhCCCcEEe
Q psy1330 75 ----EDI-VVDKHSTGGVGDKVSIPLVPALAACGLKVPM 108 (221)
Q Consensus 75 ----~~~-~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~k 108 (221)
..+ .|=+||..+...+ ..++=++.++|+++..
T Consensus 103 ~vlA~~G~~V~kHGnr~vssk--~gsadvleaLGi~~~~ 139 (317)
T PRK08136 103 LLLAREGVPVLVHGVSEDPTR--VTSAEIFEALGIPPTL 139 (317)
T ss_pred HHHHHCCCeEEEECCCCCCCc--ccHHHHHHHcCCCCCC
Confidence 011 3556665443322 4568999999999853
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.02 E-value=6.8e+02 Score=23.31 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=89.6
Q ss_pred cHHHHHHHHhCCCC---C--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC--CCHHHHHHHHHHHHhhCCC-C---C
Q psy1330 3 GIIELLRKKRSGNE---L--SPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING--LTNEETIALTKSMVDSGET-L---S 71 (221)
Q Consensus 3 ~~~~~i~k~~~g~~---L--t~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg--et~eEl~g~~~am~~~~~~-~---~ 71 (221)
+|+.+|+....+.. . ...+-..+++.+.+-.+++.-.-.++-.+.-.. .+.++...+.........+ + +
T Consensus 52 ~lr~ll~~~~~~~~w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 131 (374)
T PRK14722 52 SLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSED 131 (374)
T ss_pred HHHHHHHHHHHhhhhcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCC
Confidence 45666665444311 0 112235667888888898866666666554432 3555544444444333222 1 1
Q ss_pred -CCCCCCceeeccCCCCCCcchhhHHHHHH----hCC-CcEEeecCCCCCCCCcHHHHH----hcCCCCCCC--CCH---
Q psy1330 72 -WRPEDIVVDKHSTGGVGDKVSIPLVPALA----ACG-LKVPMVSGRGLDFSGGTLDKL----ESIPGYQVN--CST--- 136 (221)
Q Consensus 72 -~~~~~~~vD~~gtGGdg~niSt~~a~vlA----a~G-v~V~kHG~r~~ts~~GsaDvL----e~L~Gi~~~--~s~--- 136 (221)
+-....++=++|..|.|+ ||+++.+++ ..| .+|.....+. .+.|..+-| +.+ |+++. .+.
T Consensus 132 ~~~~~g~ii~lvGptGvGK--TTtiakLA~~~~~~~G~~~V~lit~D~--~R~ga~EqL~~~a~~~-gv~~~~~~~~~~l 206 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGK--TTTTAKLAARCVMRFGASKVALLTTDS--YRIGGHEQLRIFGKIL-GVPVHAVKDGGDL 206 (374)
T ss_pred ccccCCcEEEEECCCCCCH--HHHHHHHHHHHHHhcCCCeEEEEeccc--ccccHHHHHHHHHHHc-CCceEecCCcccH
Confidence 111123667899999996 333444433 335 4666555443 345655544 356 77653 233
Q ss_pred HHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhh
Q psy1330 137 ADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVT 171 (221)
Q Consensus 137 ~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~l 171 (221)
....+.+.+..+.++..+ -+.|-...+......+
T Consensus 207 ~~~l~~l~~~DlVLIDTa-G~~~~d~~l~e~La~L 240 (374)
T PRK14722 207 QLALAELRNKHMVLIDTI-GMSQRDRTVSDQIAML 240 (374)
T ss_pred HHHHHHhcCCCEEEEcCC-CCCcccHHHHHHHHHH
Confidence 344444556778899887 8888777666555555
No 200
>PRK09071 hypothetical protein; Validated
Probab=20.92 E-value=2.8e+02 Score=25.26 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=39.5
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLT 52 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget 52 (221)
+..+++..+.+| +.|..|.-.++-.+--...|+.++++|.-+||-+-..
T Consensus 25 Ea~~~~~~il~g-~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~ 73 (323)
T PRK09071 25 EARQAMGMILDG-EVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQA 73 (323)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 356677777777 6788898888888877778999999999999976543
No 201
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=20.83 E-value=63 Score=25.66 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=21.5
Q ss_pred cCCCCCCc-chhhHHHHHHhCCCcEEeecC
Q psy1330 83 STGGVGDK-VSIPLVPALAACGLKVPMVSG 111 (221)
Q Consensus 83 gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~ 111 (221)
+-||.|+. ++...|..+|..|.+|+.-=.
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred CCCCccHHHHHHHHHhcccccccccccccc
Confidence 34888985 777788888889999997543
No 202
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=20.82 E-value=2.2e+02 Score=25.24 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=33.9
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeecc-CCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 49 NGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHS-TGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 49 kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~g-tGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
+..+.+|+..+..... .. .... ..+|=++| -||.|+. ++...|..+|..|.+|+.-
T Consensus 71 ~P~~~~~l~~~l~~~~---~~-~~~~-~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 71 LPEAEGWLVELLADLD---QS-PPAR-GVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CCCCHHHHHHHHHhhc---cC-CCCC-ceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 3556777766554432 11 1111 12555555 4888985 6677778888899998773
No 203
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=20.77 E-value=2.4e+02 Score=25.92 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=39.9
Q ss_pred cCCCHHHHHHHHHHHHhhCCCC----CC--CCCC-Cceeec-cCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 49 NGLTNEETIALTKSMVDSGETL----SW--RPED-IVVDKH-STGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 49 kget~eEl~g~~~am~~~~~~~----~~--~~~~-~~vD~~-gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+.-|.+++..+...+....... +. +..+ .+|=+. .-||.|+. ++...|..+|..|.+|+.-=..
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3457888988888877532211 11 1111 244444 34899985 6677778888999999875444
No 204
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=20.74 E-value=1.3e+02 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=10.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLT 29 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~i 29 (221)
++++.+...-.+|+.++..+++.+
T Consensus 5 eli~~ia~~~~~~~~~v~~vl~~l 28 (90)
T smart00411 5 ELIDAIAEKAGLSKKDAKAAVDAF 28 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444444444444444444443
No 205
>PRK01184 hypothetical protein; Provisional
Probab=20.73 E-value=4.3e+02 Score=20.92 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=18.4
Q ss_pred EEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhC
Q psy1330 106 VPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVG 147 (221)
Q Consensus 106 V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g 147 (221)
|..+|..|.+ |+-.+.+++.+ |+++-..-+.+.+.+.+.+
T Consensus 4 i~l~G~~GsG-KsT~a~~~~~~-g~~~i~~~d~lr~~~~~~~ 43 (184)
T PRK01184 4 IGVVGMPGSG-KGEFSKIAREM-GIPVVVMGDVIREEVKKRG 43 (184)
T ss_pred EEEECCCCCC-HHHHHHHHHHc-CCcEEEhhHHHHHHHHHcC
Confidence 4445555422 33234555666 6655333344455444333
No 206
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=20.68 E-value=1.6e+02 Score=27.02 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=47.5
Q ss_pred cchhhHHHHHHhCC--------CcEEeecCCCCCCCCcHHHHHh-------cCCCCCCCCC---HHHHHHHHHhhCceee
Q psy1330 90 KVSIPLVPALAACG--------LKVPMVSGRGLDFSGGTLDKLE-------SIPGYQVNCS---TADLKAKLSEVGCFIV 151 (221)
Q Consensus 90 niSt~~a~vlAa~G--------v~V~kHG~r~~ts~~GsaDvLe-------~L~Gi~~~~s---~~~~~~~l~~~g~~fl 151 (221)
+|-|+.|.+++..| .+|...+-+..-+..--.+.+. .|||+++..+ ..+..+.+++..+.++
T Consensus 9 ~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIl 88 (342)
T TIGR03376 9 NWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVF 88 (342)
T ss_pred HHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEE
Confidence 68999999999999 8999987432111111123332 3567754322 1356678888888888
Q ss_pred cCCCcCChh-hhhhHH
Q psy1330 152 GANKQLSPG-DQILYR 166 (221)
Q Consensus 152 ~a~~~~~P~-~~~l~~ 166 (221)
..|..+.+. .+++.+
T Consensus 89 AVPs~~i~~vl~~l~~ 104 (342)
T TIGR03376 89 VIPHQFLEGICKQLKG 104 (342)
T ss_pred ECChHHHHHHHHHHHh
Confidence 776555554 555443
No 207
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=20.67 E-value=74 Score=28.52 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=25.7
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
|-+-|-||.|+. ++.=.+..+|..|.+|..+|..
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCD 37 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCD 37 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEeccc
Confidence 456788999985 6777778889999999999954
No 208
>PRK07211 replication factor A; Reviewed
Probab=20.63 E-value=2e+02 Score=27.87 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=38.6
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHcc
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTV--TGTAEDSQIGAMLMAMFIN 49 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il--~g~~~~~Qi~AfL~alr~k 49 (221)
|..+.+...++.. .+|+||..+.++... -|-..+.+.+|.|+|....
T Consensus 1 ~~~I~~~y~~l~~--~is~eefe~~v~~kve~~ggl~dE~~aamlva~elg 49 (485)
T PRK07211 1 MGAIEDVYEDLDT--DVSEEEFREAVEEKVEQMGGLADEETAAMLIAHELR 49 (485)
T ss_pred CchHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhC
Confidence 7778888888766 799999999999987 4667788889999987653
No 209
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.58 E-value=4.4e+02 Score=22.43 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=49.2
Q ss_pred CCHHHHHHHHH---hhCceeecCCCcCChhhhhhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEE-----
Q psy1330 134 CSTADLKAKLS---EVGCFIVGANKQLSPGDQILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVI----- 198 (221)
Q Consensus 134 ~s~~~~~~~l~---~~g~~fl~a~~~~~P~~~~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~----- 198 (221)
.+++++.+..+ +.|+-.+=.+-+..-+++.+..+|++.+ |+.+..+.-. -+.+|++.+|-
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~-----a~~aGA~FivsP~~~~ 98 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQ-----AIEAGAQFIVSPGLTP 98 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHH-----HHHcCCCEEECCCCCH
Confidence 35555554444 5677666333244556777888887654 7777644333 34689998886
Q ss_pred ---------eeecCCCCCCCCHHHHHH
Q psy1330 199 ---------DVKVGEASFFKTYEKAKE 216 (221)
Q Consensus 199 ---------dv~~g~~a~~~~~~~a~~ 216 (221)
+|++=||++ |+.|+.+
T Consensus 99 ~vi~~a~~~~i~~iPG~~--TptEi~~ 123 (212)
T PRK05718 99 PLLKAAQEGPIPLIPGVS--TPSELML 123 (212)
T ss_pred HHHHHHHHcCCCEeCCCC--CHHHHHH
Confidence 888888888 8777665
No 210
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.58 E-value=1.3e+02 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhc
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVT 31 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~ 31 (221)
.+++..+.....||.||++.+++.++.
T Consensus 27 ~klvDelVkkGeln~eEak~~vddl~~ 53 (108)
T COG3937 27 QKLVDELVKKGELNAEEAKRFVDDLLR 53 (108)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455566666678888888888888774
No 211
>PF15392 Joubert: Joubert syndrome-associated
Probab=20.57 E-value=44 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhCceeecCCCcCChh-hhhhHHHhhhhCCCCCchhHHHHhhhh
Q psy1330 134 CSTADLKAKLSEVGCFIVGANKQLSPG-DQILYRVRDVTATVDNLSLCSASILSK 187 (221)
Q Consensus 134 ~s~~~~~~~l~~~g~~fl~a~~~~~P~-~~~l~~lR~~lgTi~~~~l~~asilsk 187 (221)
.-|+++.++|.+..-..+ + ++.|. ......- ..++.+++++-.+.|||||
T Consensus 256 t~P~eI~~iL~~s~~sll-q--d~sp~~~e~~~~p-~~~~g~Ds~SeSTgSILSK 306 (329)
T PF15392_consen 256 TLPSEIHRILHDSHSSLL-Q--DLSPTEEEEPESP-FSVGGMDSISESTGSILSK 306 (329)
T ss_pred cCcHHHHHHHhcCcchhh-c--cCCcchhcCCCCc-cccCCccccccchhhhhhh
Confidence 357899999998655433 2 45555 2222211 2344699999999999999
No 212
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.53 E-value=3.1e+02 Score=22.49 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhhC--CC--CCch-hHHHHhhhhhhhcCCCeEEEeeecC
Q psy1330 129 GYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTA--TV--DNLS-LCSASILSKKVAEGTKYLVIDVKVG 203 (221)
Q Consensus 129 Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lg--Ti--~~~~-l~~asilskk~~~g~~~~v~dv~~g 203 (221)
|+=++.+++++.+...+.++-++... .-.| ...+..+|+.++ -+ ..+. ..... +-+....|+|++++|-+.+
T Consensus 55 ~v~vn~~~~~i~~ia~~~~~d~Vqlh-g~e~-~~~~~~l~~~~~~~~i~~i~~~~~~~~~-~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 55 GVFVNEDLEEILEIAEELGLDVVQLH-GDES-PEYCAQLRARLGLPVIKAIRVKDEEDLE-KAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred EEEeCCCHHHHHHHHHhcCCCEEEEC-CCCC-HHHHHHHHhhcCCcEEEEEecCChhhHH-HhhhccccCCEEEEcCCCC
Confidence 34457788999999999888766433 1112 234677777655 12 2221 11111 1234457999999998876
Q ss_pred C
Q psy1330 204 E 204 (221)
Q Consensus 204 ~ 204 (221)
+
T Consensus 132 ~ 132 (203)
T cd00405 132 G 132 (203)
T ss_pred C
Confidence 4
No 213
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.29 E-value=2e+02 Score=27.81 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=38.4
Q ss_pred eeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCH
Q psy1330 79 VDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCST 136 (221)
Q Consensus 79 vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~ 136 (221)
+=+.|.||-|- ...|-++...|++|- |+....+. ..+.|+++ |+.+-..-
T Consensus 10 iHfIGIgG~GM---sglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~-G~~i~~gh 59 (459)
T COG0773 10 IHFIGIGGIGM---SGLAEILLNLGYKVS--GSDLAESP--MTQRLEAL-GIEIFIGH 59 (459)
T ss_pred EEEEeeccccH---HHHHHHHHhCCCceE--CccccccH--HHHHHHHC-CCeEeCCC
Confidence 55677777773 367889999999998 88876555 88999999 99875533
No 214
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=20.22 E-value=78 Score=26.89 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=24.5
Q ss_pred eeeccCCCCCCc-chhhHHHHHHhCCCcEEee
Q psy1330 79 VDKHSTGGVGDK-VSIPLVPALAACGLKVPMV 109 (221)
Q Consensus 79 vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kH 109 (221)
|=+.|=||.|+. ++.-.|..+|..|.+|+.-
T Consensus 4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344578999986 6777788889999999863
No 215
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.21 E-value=2.1e+02 Score=20.34 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCC-C--C----HHHHHHHHHhhCceee
Q psy1330 95 LVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVN-C--S----TADLKAKLSEVGCFIV 151 (221)
Q Consensus 95 ~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~-~--s----~~~~~~~l~~~g~~fl 151 (221)
.+--+...|+++. .+.||++.|+.- |+++. . . ...+.+.+++..+.++
T Consensus 5 ~~~~l~~lG~~i~--------AT~gTa~~L~~~-Gi~~~~~~~ki~~~~~~i~~~i~~g~id~V 59 (90)
T smart00851 5 LAKRLAELGFELV--------ATGGTAKFLREA-GLPVKTLHPKVHGGILAILDLIKNGEIDLV 59 (90)
T ss_pred HHHHHHHCCCEEE--------EccHHHHHHHHC-CCcceeccCCCCCCCHHHHHHhcCCCeEEE
Confidence 3445667777776 456889999988 88763 1 1 1347777887777666
No 216
>PF02627 CMD: Carboxymuconolactone decarboxylase family; InterPro: IPR003779 The catechol and protocatechuate branches of the 3-oxoadipate pathway, which are important for the bacterial degradation of aromatic compounds, converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase (CMD) is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway [].; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 2GMY_E 2CWQ_C 2QEU_B 1P8C_D 1VKE_C 2OUW_A 2AF7_G 3D7I_A 1ME5_B 1KNC_A ....
Probab=20.06 E-value=2.9e+02 Score=18.57 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=44.3
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRS-GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~-g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+.++...+.. ...|+..+-.-+.-.+....-.+..+..-.-..+-.|.|.||+.......
T Consensus 7 ~~~~~~~~~~~~~~L~~~~reli~la~s~~~~~~~c~~~H~~~a~~~G~t~eei~~~~~~~ 67 (85)
T PF02627_consen 7 FAEFREALLARDGGLDPKERELIALAVSAANGCAYCVKAHARAARKAGVTEEEIDEAVRWA 67 (85)
T ss_dssp HHHHHHHHHHSSSSS-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4445555555 66788888777777777777788888888888889999999998776643
No 217
>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.
Probab=20.02 E-value=2.1e+02 Score=24.21 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGT-AEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~-~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
+.||.||...+++.+.... .....-.+++..+..-|.-..|+.++.
T Consensus 93 ~~lt~eei~~l~~~~~~~~~~~~~r~~~~~~l~~~tGlR~~Ei~~L~ 139 (287)
T cd00799 93 LAILPEDLDKLRSLLDESDTLRDLRDLALLLLGFAGLLRRSELVRLR 139 (287)
T ss_pred CCCCHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhhhhHHHHHhhh
Confidence 5799999999999987543 223344567777788899999998775
No 218
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.01 E-value=4.4e+02 Score=23.02 Aligned_cols=96 Identities=23% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC--------CCCCcchhhHHHHHHhCCCcEEeecCCCCCC
Q psy1330 45 AMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTG--------GVGDKVSIPLVPALAACGLKVPMVSGRGLDF 116 (221)
Q Consensus 45 alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG--------Gdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts 116 (221)
=|++|.-|+||+..+- +.-+.+.. .++.. -+|+.+|| |.|..-=. ...+=++.|+||+ |+
T Consensus 38 Rmpl~~VT~EeL~~M~-~~t~~aAl-~Lada--~vdvI~Y~CtsgS~i~G~~~d~ei-~~~ie~~~~v~vv-------Tt 105 (238)
T COG3473 38 RMPLKNVTPEELLKME-SYTERAAL-ELADA--GVDVIVYGCTSGSLIGGPGYDKEI-AQRIEEAKGVPVV-------TT 105 (238)
T ss_pred ccccccCCHHHHHHHH-HHHHHHHH-hcCcc--ccCEEEEeccceeeecCCchhHHH-HHHHHhccCCcee-------ec
Confidence 4677888999998775 33222211 12211 34555443 22322122 2233334478776 33
Q ss_pred CCcHHHHHhcCCCCCC--------CCCHHHHHHHHHhhCceeecC
Q psy1330 117 SGGTLDKLESIPGYQV--------NCSTADLKAKLSEVGCFIVGA 153 (221)
Q Consensus 117 ~~GsaDvLe~L~Gi~~--------~~s~~~~~~~l~~~g~~fl~a 153 (221)
..-..+-|.+| |++- +-.-+...+.++.+||-.+..
T Consensus 106 s~Avv~aL~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 106 STAVVEALNAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred hHHHHHHHHhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 23345888899 8861 222345667788899987633
Done!