Query psy1330
Match_columns 221
No_of_seqs 133 out of 1539
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 15:57:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h5q_A PYNP, pyrimidine-nucleo 100.0 1.5E-69 5.2E-74 501.6 26.4 219 2-221 4-224 (436)
2 2dsj_A Pyrimidine-nucleoside ( 100.0 6.1E-68 2.1E-72 489.4 26.0 219 3-221 2-220 (423)
3 2tpt_A Thymidine phosphorylase 100.0 1.4E-67 4.6E-72 489.8 26.8 220 1-220 1-223 (440)
4 1brw_A PYNP, protein (pyrimidi 100.0 1.8E-67 6.1E-72 488.2 26.8 219 3-221 2-221 (433)
5 1uou_A Thymidine phosphorylase 100.0 1.3E-66 4.5E-71 486.2 25.8 219 3-221 29-249 (474)
6 1khd_A Anthranilate phosphorib 100.0 1.6E-57 5.4E-62 411.7 17.0 200 2-220 11-218 (345)
7 1o17_A Anthranilate PRT, anthr 100.0 3.6E-56 1.2E-60 402.8 19.2 191 3-199 2-216 (345)
8 2elc_A Trp D, anthranilate pho 100.0 6.2E-56 2.1E-60 399.0 18.3 189 6-198 2-214 (329)
9 3r88_A Anthranilate phosphorib 100.0 2.1E-55 7.2E-60 401.8 20.0 192 2-201 24-221 (377)
10 1vqu_A Anthranilate phosphorib 100.0 1.7E-55 5.7E-60 402.1 19.1 189 2-200 25-229 (374)
11 4hkm_A Anthranilate phosphorib 100.0 3.5E-55 1.2E-59 396.5 20.5 192 3-200 5-199 (346)
12 1zu4_A FTSY; GTPase, signal re 92.3 2.6 8.9E-05 36.7 13.1 109 4-112 18-142 (320)
13 3ol3_A Putative uncharacterize 85.5 4.8 0.00016 30.0 8.1 55 15-69 42-101 (107)
14 1j8m_F SRP54, signal recogniti 84.7 18 0.00061 30.9 16.8 111 3-113 6-136 (297)
15 2lky_A Uncharacterized protein 82.5 1.7 5.9E-05 32.6 4.6 57 15-71 39-96 (112)
16 2kvc_A Putative uncharacterize 80.9 1.7 5.7E-05 32.3 3.9 56 15-70 37-93 (103)
17 2m0n_A Putative uncharacterize 80.8 5.2 0.00018 30.0 6.7 57 14-70 38-102 (112)
18 4gim_A Pseudouridine-5'-phosph 80.3 5.3 0.00018 35.4 7.6 180 19-206 68-264 (335)
19 3fkq_A NTRC-like two-domain pr 78.1 28 0.00096 30.3 11.9 35 78-112 145-181 (373)
20 3ezx_A MMCP 1, monomethylamine 77.1 28 0.00096 28.3 11.0 185 4-221 6-214 (215)
21 3fyb_A Protein of unknown func 76.9 2.2 7.5E-05 31.4 3.5 33 13-45 58-98 (104)
22 4ex8_A ALNA; alpha/beta/alpha- 76.4 1.7 5.9E-05 38.2 3.3 168 28-205 58-242 (316)
23 1vma_A Cell division protein F 75.2 39 0.0013 29.0 16.9 107 4-112 30-141 (306)
24 1vkm_A Conserved hypothetical 74.6 3.3 0.00011 36.1 4.6 146 50-205 73-232 (297)
25 2ffh_A Protein (FFH); SRP54, s 72.5 55 0.0019 29.5 14.2 108 4-112 9-135 (425)
26 2xxa_A Signal recognition part 70.5 61 0.0021 29.2 15.4 117 4-122 9-146 (433)
27 3bfv_A CAPA1, CAPB2, membrane 65.2 9.4 0.00032 32.0 5.4 34 78-111 84-119 (271)
28 1l6x_B Minimized B-domain of p 64.5 19 0.00066 21.1 5.0 32 35-66 2-33 (34)
29 3cio_A ETK, tyrosine-protein k 63.3 8.6 0.00029 32.7 4.9 35 78-112 106-142 (299)
30 2o35_A Hypothetical protein DU 60.0 3.3 0.00011 30.5 1.3 33 13-45 59-99 (105)
31 3kl4_A SRP54, signal recogniti 59.3 1E+02 0.0035 27.8 15.5 111 2-112 4-134 (433)
32 1zug_A Phage 434 CRO protein; 58.7 14 0.00047 23.4 4.2 37 1-43 1-37 (71)
33 1ejd_A MURA, EPT, UDP-N-acetyl 53.8 17 0.00059 32.4 5.3 92 39-134 26-138 (419)
34 2v3c_C SRP54, signal recogniti 53.6 85 0.0029 28.2 10.0 111 3-113 7-137 (432)
35 3ea0_A ATPase, para family; al 53.4 14 0.00047 29.4 4.2 34 78-111 6-42 (245)
36 2ahq_A Sigma-54, RNA polymeras 52.3 22 0.00075 24.6 4.5 31 13-43 12-47 (76)
37 1y80_A Predicted cobalamin bin 51.7 37 0.0013 27.0 6.6 185 1-220 1-207 (210)
38 1rf6_A 5-enolpyruvylshikimate- 49.1 26 0.0009 31.3 5.8 95 37-134 22-138 (427)
39 2qgu_A Probable signal peptide 49.0 29 0.001 28.2 5.6 62 6-67 41-105 (211)
40 4fqd_A NIKO protein; beta/alph 47.7 18 0.00062 33.2 4.5 81 53-134 59-157 (479)
41 1adr_A P22 C2 repressor; trans 46.4 29 0.00099 22.1 4.3 55 1-63 3-57 (76)
42 1g8i_A Frequenin, neuronal cal 45.0 56 0.0019 24.3 6.4 51 7-57 12-66 (190)
43 2r1j_L Repressor protein C2; p 43.8 32 0.0011 21.3 4.1 54 1-62 3-56 (68)
44 1fpw_A Yeast frequenin, calciu 43.6 51 0.0017 24.5 6.0 50 6-55 11-64 (190)
45 2j37_W Signal recognition part 42.9 1.4E+02 0.0047 27.5 9.8 117 6-124 12-148 (504)
46 3tsm_A IGPS, indole-3-glycerol 42.6 1.3E+02 0.0044 25.5 8.8 77 130-217 75-161 (272)
47 3b7h_A Prophage LP1 protein 11 42.4 44 0.0015 21.3 4.8 53 4-63 8-60 (78)
48 1bjf_A Neurocalcin delta; calc 41.6 29 0.00099 26.1 4.2 51 7-57 12-66 (193)
49 3r38_A UDP-N-acetylglucosamine 40.2 35 0.0012 30.9 5.2 79 53-134 72-164 (454)
50 2yvw_A UDP-N-acetylglucosamine 40.2 29 0.00098 31.1 4.5 90 41-134 37-147 (425)
51 2pqc_A 3-phosphoshikimate 1-ca 39.4 37 0.0013 30.5 5.2 95 37-134 25-141 (445)
52 2kpj_A SOS-response transcript 38.5 75 0.0026 21.4 5.7 54 3-64 9-62 (94)
53 3ff5_A PEX14P, peroxisomal bio 36.6 56 0.0019 21.1 4.3 34 24-60 15-51 (54)
54 5pal_A Parvalbumin; calcium-bi 36.3 84 0.0029 21.2 5.7 43 15-60 4-47 (109)
55 3r38_A UDP-N-acetylglucosamine 35.7 25 0.00085 31.9 3.4 97 36-135 187-301 (454)
56 4hkm_A Anthranilate phosphorib 35.1 59 0.002 28.4 5.7 49 3-52 23-71 (346)
57 2o0b_A 3-phosphoshikimate 1-ca 35.0 1.4E+02 0.0047 26.9 8.3 104 30-135 162-287 (450)
58 1ae9_A Lambda integrase; DNA r 34.8 47 0.0016 24.6 4.5 42 15-59 2-43 (179)
59 2yhs_A FTSY, cell division pro 33.5 2.9E+02 0.01 25.5 15.4 104 9-112 215-330 (503)
60 1y7y_A C.AHDI; helix-turn-heli 32.8 40 0.0014 21.3 3.3 52 4-63 14-65 (74)
61 1s1e_A KV channel interacting 32.6 74 0.0025 25.0 5.5 46 16-61 47-96 (224)
62 3mzy_A RNA polymerase sigma-H 31.3 61 0.0021 23.5 4.5 36 23-60 99-134 (164)
63 2d8n_A Recoverin; structural g 30.7 80 0.0027 23.9 5.3 40 17-56 30-73 (207)
64 1s6c_A KV4 potassium channel-i 30.4 78 0.0027 23.4 5.0 47 14-60 12-62 (183)
65 3gr7_A NADPH dehydrogenase; fl 29.9 1E+02 0.0035 26.6 6.4 94 48-154 131-249 (340)
66 2yvw_A UDP-N-acetylglucosamine 29.9 19 0.00064 32.3 1.5 89 42-134 178-282 (425)
67 1h8b_A ACT-EF34, alpha-actinin 29.8 75 0.0026 21.3 4.3 38 18-63 8-47 (75)
68 3kz3_A Repressor protein CI; f 29.7 49 0.0017 21.6 3.4 53 3-63 12-64 (80)
69 2kn2_A Calmodulin; S MAPK phos 29.6 1.2E+02 0.004 19.7 6.4 29 17-46 26-54 (92)
70 1nkz_B Light-harvesting protei 29.5 24 0.00083 21.6 1.5 17 16-32 2-18 (41)
71 3vzx_A Heptaprenylglyceryl pho 29.2 62 0.0021 26.8 4.6 154 48-220 40-224 (228)
72 3u5c_N S27A, YS15, 40S ribosom 28.9 69 0.0023 25.1 4.4 30 16-45 27-56 (151)
73 1aih_A HP1 integrase; DNA inte 28.8 51 0.0017 24.5 3.7 44 14-59 4-47 (170)
74 1o17_A Anthranilate PRT, anthr 28.7 1.2E+02 0.0042 26.5 6.6 46 24-69 5-51 (345)
75 3rmt_A 3-phosphoshikimate 1-ca 28.4 72 0.0025 29.0 5.2 79 53-134 50-143 (455)
76 2xzm_O RPS13E; ribosome, trans 28.2 66 0.0023 25.2 4.2 29 16-44 29-57 (153)
77 3dm5_A SRP54, signal recogniti 28.1 3.4E+02 0.011 24.5 18.7 110 3-112 9-137 (443)
78 2wiu_B HTH-type transcriptiona 27.6 75 0.0026 20.8 4.1 53 4-64 13-65 (88)
79 1ls1_A Signal recognition part 27.5 2.7E+02 0.0091 23.2 14.8 108 4-112 9-135 (295)
80 2xf7_A GP23.1; viral protein; 27.4 35 0.0012 21.4 2.0 22 6-27 22-43 (51)
81 2mys_B Myosin; muscle protein, 26.9 1.8E+02 0.006 20.9 7.7 47 15-62 40-86 (166)
82 2jul_A Calsenilin; EF-hand, ca 26.5 89 0.003 25.0 5.0 45 15-59 86-134 (256)
83 2b4l_A Glycine betaine-binding 26.4 1.5E+02 0.0053 24.5 6.6 35 20-58 108-142 (268)
84 1lmb_3 Protein (lambda repress 26.4 1E+02 0.0035 20.4 4.6 52 4-63 18-69 (92)
85 3ovg_A Amidohydrolase; structu 26.3 1.8E+02 0.0062 25.4 7.3 56 91-148 170-235 (363)
86 3j20_Q 30S ribosomal protein S 26.3 55 0.0019 25.8 3.5 28 16-43 27-54 (158)
87 1wdc_B Scallop myosin; calcium 26.3 1.6E+02 0.0055 20.8 6.1 46 15-62 33-78 (156)
88 1x57_A Endothelial differentia 26.1 1.4E+02 0.0049 19.6 6.1 54 3-64 13-66 (91)
89 2ef8_A C.ECOT38IS, putative tr 26.1 89 0.003 20.1 4.2 53 3-63 10-62 (84)
90 2lr2_A Immunoglobulin G-bindin 25.7 1.5E+02 0.0052 20.6 5.2 37 30-66 14-50 (88)
91 2w7n_A TRFB transcriptional re 25.4 1E+02 0.0035 22.2 4.6 40 15-58 3-42 (101)
92 2p1h_A APAF-1, apoptotic prote 25.2 1.5E+02 0.0053 20.1 5.5 59 4-68 24-82 (94)
93 3bey_A Conserved protein O2701 25.1 1.6E+02 0.0055 19.8 7.4 60 4-63 19-78 (96)
94 1y9i_A Low temperature require 24.9 1.2E+02 0.0041 24.3 5.3 47 15-64 41-108 (178)
95 3w01_A Heptaprenylglyceryl pho 24.9 38 0.0013 28.3 2.4 153 48-219 45-229 (235)
96 1vqu_A Anthranilate phosphorib 24.9 1.3E+02 0.0044 26.7 6.1 49 4-53 45-93 (374)
97 3qwo_C Motavizumab epitope sca 24.8 92 0.0032 20.3 3.7 30 36-65 4-33 (57)
98 3fwb_A Cell division control p 24.8 1.8E+02 0.0063 20.4 6.6 48 15-63 38-88 (161)
99 3iix_A Biotin synthetase, puta 24.7 61 0.0021 27.4 3.8 25 1-27 1-25 (348)
100 4i1u_A Dephospho-COA kinase; s 24.6 21 0.00072 29.2 0.8 25 178-202 97-121 (210)
101 1rfz_A Hypothetical protein AP 24.4 2.3E+02 0.0079 22.4 6.9 57 4-63 30-109 (168)
102 2l2e_A Calcium-binding protein 24.2 79 0.0027 23.5 4.1 30 17-46 22-55 (190)
103 3qwg_A ESX-1 secretion-associa 24.2 2.1E+02 0.0072 20.8 6.5 58 4-63 6-69 (123)
104 3h5q_A PYNP, pyrimidine-nucleo 24.2 2.1E+02 0.007 26.0 7.4 45 6-51 26-70 (436)
105 1zda_A Mini protein A domain, 24.1 20 0.00069 21.6 0.4 34 32-65 4-37 (38)
106 1lgh_B LH II, B800/850, light 24.1 35 0.0012 21.4 1.5 18 15-32 6-23 (45)
107 4h1z_A Enolase Q92ZS5; dehydra 23.9 96 0.0033 27.5 5.1 108 98-219 198-327 (412)
108 3r88_A Anthranilate phosphorib 23.9 1.3E+02 0.0044 26.7 5.9 49 3-52 43-91 (377)
109 1r69_A Repressor protein CI; g 23.6 1.1E+02 0.0039 18.6 4.2 34 4-43 2-35 (69)
110 4e38_A Keto-hydroxyglutarate-a 23.2 1.9E+02 0.0064 23.9 6.4 74 136-216 48-142 (232)
111 3fs7_A Parvalbumin, thymic; ca 23.1 1.7E+02 0.0059 19.5 5.7 47 14-63 4-51 (109)
112 3nvs_A 3-phosphoshikimate 1-ca 23.0 82 0.0028 28.4 4.5 97 37-134 48-166 (450)
113 3nrs_A Dihydrofolate:folylpoly 23.0 49 0.0017 29.6 3.0 35 78-113 54-88 (437)
114 2o97_B NS1, HU-1, DNA-binding 22.7 82 0.0028 21.6 3.6 26 5-30 4-29 (90)
115 3qq6_A HTH-type transcriptiona 22.6 1.6E+02 0.0055 19.0 5.0 54 3-63 10-63 (78)
116 3bul_A Methionine synthase; tr 22.4 2.5E+02 0.0085 26.4 7.8 184 4-220 12-221 (579)
117 1khd_A Anthranilate phosphorib 22.3 1.6E+02 0.0056 25.6 6.2 34 18-51 44-77 (345)
118 1tc3_C Protein (TC3 transposas 22.3 1.1E+02 0.0038 17.0 4.6 27 15-42 4-30 (51)
119 4dye_A Isomerase; enolase fami 22.2 2.5E+02 0.0085 24.7 7.5 73 134-219 223-306 (398)
120 3kat_A Nacht, LRR and PYD doma 22.2 1.9E+02 0.0064 21.0 5.5 58 2-66 34-91 (107)
121 3dtp_E RLC, myosin regulatory 22.1 91 0.0031 23.7 4.1 43 16-60 73-115 (196)
122 3ivp_A Putative transposon-rel 21.8 1.5E+02 0.0052 20.9 5.1 55 2-64 11-65 (126)
123 2y3z_A 3-isopropylmalate dehyd 21.6 1.4E+02 0.0049 26.4 5.7 125 84-220 9-171 (359)
124 3t76_A VANU, transcriptional r 21.6 83 0.0028 21.6 3.4 51 5-64 26-76 (88)
125 3fwy_A Light-independent proto 21.6 47 0.0016 28.5 2.5 35 78-112 50-85 (314)
126 3end_A Light-independent proto 21.5 48 0.0016 27.5 2.5 33 78-110 43-76 (307)
127 3slh_A 3-phosphoshikimate 1-ca 21.4 1.2E+02 0.0041 27.3 5.2 79 53-132 49-142 (441)
128 3op9_A PLI0006 protein; struct 21.4 1.3E+02 0.0043 20.9 4.5 54 2-63 8-61 (114)
129 4dim_A Phosphoribosylglycinami 21.4 42 0.0014 29.0 2.1 123 92-220 19-142 (403)
130 1bu3_A Calcium-binding protein 21.3 1.9E+02 0.0064 19.2 6.2 43 13-58 3-46 (109)
131 2kz2_A Calmodulin, CAM; TR2C, 21.3 1.1E+02 0.0036 20.6 3.9 49 15-64 24-75 (94)
132 2tpt_A Thymidine phosphorylase 21.3 2.4E+02 0.008 25.6 7.2 48 4-52 22-69 (440)
133 3iqw_A Tail-anchored protein t 21.2 61 0.0021 28.0 3.2 45 78-125 18-63 (334)
134 3qja_A IGPS, indole-3-glycerol 21.2 3.6E+02 0.012 22.4 8.1 69 130-203 68-146 (272)
135 2bl0_C Myosin regulatory light 21.1 2.1E+02 0.0072 19.7 6.5 46 16-62 22-70 (142)
136 2cob_A LCOR protein; MLR2, KIA 21.0 93 0.0032 21.2 3.3 26 15-40 12-37 (70)
137 3ol3_A Putative uncharacterize 21.0 2E+02 0.007 21.0 5.5 31 16-46 65-95 (107)
138 2od5_A Hypothetical protein; m 20.9 1.2E+02 0.0042 22.0 4.1 43 3-45 15-57 (116)
139 2dsj_A Pyrimidine-nucleoside ( 20.7 2.6E+02 0.0089 25.2 7.3 49 4-53 21-69 (423)
140 1brw_A PYNP, protein (pyrimidi 20.7 2.6E+02 0.0089 25.3 7.3 49 4-53 21-69 (433)
141 3rmt_A 3-phosphoshikimate 1-ca 20.7 45 0.0015 30.4 2.2 97 35-134 170-282 (455)
142 3l6g_A Betaine ABC transporter 20.3 1.2E+02 0.004 24.9 4.6 34 21-58 206-239 (256)
143 3r1f_A ESX-1 secretion-associa 20.2 2.7E+02 0.0091 20.5 6.7 59 4-64 8-72 (135)
144 2woo_A ATPase GET3; tail-ancho 20.2 47 0.0016 28.4 2.1 35 78-112 21-56 (329)
145 1vz0_A PARB, chromosome partit 20.1 3E+02 0.01 22.3 7.1 46 15-60 97-144 (230)
No 1
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-69 Score=501.64 Aligned_cols=219 Identities=40% Similarity=0.677 Sum_probs=211.8
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCC-Ccee
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPED-IVVD 80 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~-~~vD 80 (221)
++|+++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||.||+++|++||++++.+++|+..+ .++|
T Consensus 4 m~~~~~I~kl~~g~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~vD 83 (436)
T 3h5q_A 4 MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGDMIDLSDIKGVKVD 83 (436)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCTTSCSCCEE
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCccccCCCcee
Confidence 468999999999999999999999999999999999999999999999999999999999999999999987422 3899
Q ss_pred eccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeec-CCCcCCh
Q psy1330 81 KHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVG-ANKQLSP 159 (221)
Q Consensus 81 ~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~-a~~~~~P 159 (221)
||||||||+|+||++++++|++|+||+|||||++||++||+|+||+|||++++++++++.+++++.|++|++ ++ +|||
T Consensus 84 ~~gTGGdG~~tSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaLpGi~~~ls~e~~~~~l~~~g~~fl~~a~-~~~P 162 (436)
T 3h5q_A 84 KHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSG-NLTP 162 (436)
T ss_dssp EEECCCTTCCHHHHHHHHHHHTTCCEEEECCCCSSSSCCHHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEECCCS-SSCH
T ss_pred ecCCCCCCCChHHHHHHHHHhCCCCEEeECCCCCCCcccHHHHHHhCcCCCCCCCHHHHHHHHHHcCCEEEcccc-ccCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 57 9999
Q ss_pred hhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 160 GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
+|++++++|++++||||+||+++||||||+++|++++|||||+|+||||++.++|++||+.|
T Consensus 163 a~~~l~~lR~~~~TvfniPLinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a~~lA~~l 224 (436)
T 3h5q_A 163 ADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAM 224 (436)
T ss_dssp HHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcCChhhhccchhccccccCCCeEEEeeecCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 2
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=6.1e-68 Score=489.36 Aligned_cols=219 Identities=42% Similarity=0.652 Sum_probs=210.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
.|+++|+|+.+|++||+||++++|+.|++|+++|+|+||||||+|+||||.||+++|++||++++.+++|+...+++|+|
T Consensus 2 ~~~~~i~k~~~g~~Lt~eEa~~~~~~i~~G~~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l~~~~~~~~vD~~ 81 (423)
T 2dsj_A 2 NPVAFIREKREGKKHRREDLEAFLLGYLRDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVLDLSGLPHPVDKH 81 (423)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCCCCTTSSSBEEEE
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccccCCceeEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987422279999
Q ss_pred cCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhh
Q psy1330 83 STGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQ 162 (221)
Q Consensus 83 gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~ 162 (221)
||||||+||||+++|++|+||+||+|||||++||++||+|+||+|||++++++++++.+++++.|++|+++.++|||+|+
T Consensus 82 gTGGdG~niSt~~a~vvAa~Gv~VaKhGnR~~ss~~GsaDvLEaL~Gv~i~l~~e~~~~~l~~~Gi~f~~~~~~~~PA~k 161 (423)
T 2dsj_A 82 SSGGVGDKVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKLESVPGWRGEMTEAEFLERARRVGLVIAAQSPDLAPLDG 161 (423)
T ss_dssp EESSSCCSTHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHTSEEEESCGGGBSHHHH
T ss_pred cCCCCCccHHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHhCCCCCCCCCHHHHHHHHHHcCEEEEecccccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988239999999
Q ss_pred hhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 163 ILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 163 ~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
+++++|++|||+++++||++||||||+++|++++|+|||+|+|+||+++++++.||+.|
T Consensus 162 ~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~~l 220 (423)
T 2dsj_A 162 KLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTM 220 (423)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864
No 3
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=1.4e-67 Score=489.84 Aligned_cols=220 Identities=47% Similarity=0.749 Sum_probs=213.1
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCC--CC-C
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRP--ED-I 77 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~--~~-~ 77 (221)
|+.|+++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||.||+++|++||++++.+++|+. ++ .
T Consensus 1 ~m~~~~~i~k~~~g~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~~ 80 (440)
T 2tpt_A 1 LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGP 80 (440)
T ss_dssp CCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBCCCCTTTTCSSC
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccccCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999975 32 2
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
++|+|||||||+||||+++|++|+||+||+|||||++||++||+|+||+|||++++++++++.+++++.|++|++++++|
T Consensus 81 ~vD~~gTGGdG~~iSt~~A~vvAa~Gv~VaKHGnR~~ss~~GsaDvLEaL~Gv~~~ls~e~~~~~l~~~G~~fl~a~~~~ 160 (440)
T 2tpt_A 81 IVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL 160 (440)
T ss_dssp BEEEEECCCSSCCHHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCHHHHHHHHHHTSEEEEECCTTB
T ss_pred eeeeCCCCCCCccHHHHHHHHHHhCCCcEEEECCCCCCCcccHHHHHHhCcCCCCCCCHHHHHHHHHHcCEEEEcCchhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994389
Q ss_pred ChhhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 158 SPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 158 ~P~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
||+|++++++|++|+||||+||+++|+||||+|+|++++|+|||+|+||||++.++++.++..
T Consensus 161 hPA~k~l~~lR~~lrTvfNiPLin~s~lskk~A~G~~alVvdVk~G~gaf~~~~de~~~la~t 223 (440)
T 2tpt_A 161 APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEA 223 (440)
T ss_dssp SHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCSEEEEEEEESTTSSSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCccChhhcCCHHHHHHHhcCCCeEEEEeccCCccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=1.8e-67 Score=488.22 Aligned_cols=219 Identities=43% Similarity=0.713 Sum_probs=211.1
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCC-Cceee
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPED-IVVDK 81 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~-~~vD~ 81 (221)
.|+++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||.||+++|++||++++.+++|+..+ .++|+
T Consensus 2 ~~~~~i~k~~~g~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v~~~~~~~~~vD~ 81 (433)
T 1brw_A 2 RMVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDK 81 (433)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCTTSCSCCEEE
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCceee
Confidence 58899999999999999999999999999999999999999999999999999999999999999999886421 28999
Q ss_pred ccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhh
Q psy1330 82 HSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGD 161 (221)
Q Consensus 82 ~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~ 161 (221)
|||||||+||||+++|++|+||+||+|||||++||++||+|+||+|||++++++++++.+++++.|++|++++++|||+|
T Consensus 82 ~gTGGdG~~iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaL~Gv~i~ls~e~~~~~l~~~Gi~fl~a~~~~hPA~ 161 (433)
T 1brw_A 82 HSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPAD 161 (433)
T ss_dssp EECCCSSCCHHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEEECCTTSCHHH
T ss_pred CCCCCCCcchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHCcCceecCCHHHHHHHHHHcCeeEecCchhhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999944899999
Q ss_pred hhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 162 QILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 162 ~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
++++++|++|+||||+||+++|+||||+|+|++++|+|||+|+|+||++.++++.++..|
T Consensus 162 k~l~~lR~~lrTvfNiPLin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~~~l~~~~ 221 (433)
T 1brw_A 162 KKLYALRDVTATVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVM 221 (433)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccChhhcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998754
No 5
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=1.3e-66 Score=486.19 Aligned_cols=219 Identities=56% Similarity=0.859 Sum_probs=209.0
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCC-C-Ccee
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPE-D-IVVD 80 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~-~-~~vD 80 (221)
+|+++|+|+.+|++||+||++++|+.|++|+++|+|+||||||+|+||||.||+++|++||++++.+++|+.. + .++|
T Consensus 29 ~~~~iI~k~~~g~~Lt~eEa~~~~~~i~~G~~sd~QiaAfLmAlr~kGeT~eEiag~a~AMr~~~~~v~~~~~~~~~~vD 108 (474)
T 1uou_A 29 QLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVD 108 (474)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCCGGGGGGBEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCCeeE
Confidence 4889999999999999999999999999999999999999999999999999999999999999999988742 1 2899
Q ss_pred eccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChh
Q psy1330 81 KHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPG 160 (221)
Q Consensus 81 ~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~ 160 (221)
+|||||||+||||+++|++|+||++|+|||||++||++||+|+||+|||++++++++++.+++++.|++|++++++|||+
T Consensus 109 ~~gTGGdG~~iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GSaDvLEaLpGv~i~ls~e~~~~~l~~~Gi~fl~a~~~~hPA 188 (474)
T 1uou_A 109 KHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPA 188 (474)
T ss_dssp EEESCCTTCCHHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEECCCSSSSHH
T ss_pred eCCCCCCCceeHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCCCCCCCHHHHHHHHHHcCeEEecCchhhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994389999
Q ss_pred hhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHhC
Q psy1330 161 DQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221 (221)
Q Consensus 161 ~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~~ 221 (221)
|++++++|++++||||+||+++|+||||+|+|++++|+|||+|+||||++.++++.++..|
T Consensus 189 ~k~l~~lR~~lrTvfNiPLinpsi~skklA~g~~~~VlgVk~G~gafm~~lde~~~la~~~ 249 (474)
T 1uou_A 189 DGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTL 249 (474)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCccchhhcCcHHHHHHHhhcCCeEEEEeccccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998754
No 6
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=1.6e-57 Score=411.69 Aligned_cols=200 Identities=24% Similarity=0.297 Sum_probs=176.3
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceee
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDK 81 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~ 81 (221)
..|+++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||+||++||++||++++.+++++..+ ++|+
T Consensus 11 ~~~~~~i~kl~~g~~Lt~eEa~~~~~~il~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~~~~-~vD~ 89 (345)
T 1khd_A 11 FTHQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYD-FADI 89 (345)
T ss_dssp -CCHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCCSSC-CEEE
T ss_pred cCHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCC-eeee
Confidence 467899999999999999999999999999999999999999999999999999999999999999998876323 8999
Q ss_pred ccCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCC-CCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 82 HSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDF-SGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 82 ~gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts-~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
|||||||+| |||++|+++|++|+||+|||||++|| ++||+|+||+| |++++++++++.+++++.|++|++++ +|
T Consensus 90 ~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~GsaDvLeaL-Gv~~~~~~~~~~~~l~~~gi~fl~a~-~~ 167 (345)
T 1khd_A 90 VGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAF-GIRLDMSAEDSRQALDDLNVCFLFAP-QY 167 (345)
T ss_dssp EECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHT-TCCTTCCHHHHHHHHHHHSEEEEEHH-HH
T ss_pred cCCCCCCCCccchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHHHHHHhC-CCCCCCCHHHHHHHHHHCCEEEEehh-hh
Confidence 999999974 89999999999999999999999999 99999999999 99999999999999999999999998 99
Q ss_pred ChhhhhhHHHhhhhC--CCCCc--hhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 158 SPGDQILYRVRDVTA--TVDNL--SLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 158 ~P~~~~l~~lR~~lg--Ti~~~--~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
||+|++++++|++|| |+||+ |++++ +|++++|+|| | +++.++.+|+.
T Consensus 168 hPa~k~l~~~R~~Lg~rTvfn~lgpL~nP--------a~~~~~v~GV------~--~~~~~~~~a~~ 218 (345)
T 1khd_A 168 HTGFRHAMPVRQQLKTRTIFNVLGPLINP--------ARPPKALIGV------Y--SPELVLPIAQA 218 (345)
T ss_dssp CGGGGGGHHHHHHHCSCCTHHHHGGGCCT--------TCCSEEEEEC------S--SGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHhcCC--------cCCCeEEEee------c--CHHHHHHHHHH
Confidence 999999999999998 66666 55555 7999999998 5 34667777654
No 7
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=3.6e-56 Score=402.81 Aligned_cols=191 Identities=19% Similarity=0.282 Sum_probs=179.7
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
+|+++|+|+.+|++||+||++++|+.|++|+++|+|+||||+++|+||||+||++||++||++++.+++++ + ++|||
T Consensus 2 ~~~~~i~k~~~g~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~--~-~vD~~ 78 (345)
T 1o17_A 2 NINEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVP--N-AIDTA 78 (345)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCT--T-CEECC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC--C-ceeeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999998876 3 79999
Q ss_pred cCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 83 STGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 83 gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
||||||+| |||++|+++|++ +||+|||||++||++||+|+||+| |++++++++++.+++++.|++|+++| +|||
T Consensus 79 gTGGdg~~tfNiSt~~A~v~Aa~-v~VaKHGnR~~ss~~GsaDvLEaL-Gv~~~~~~e~~~~~l~~~gi~fl~a~-~~hP 155 (345)
T 1o17_A 79 GTGGDGLGTVNVSTASAILLSLV-NPVAKHGNRAVSGKSGSADVLEAL-GYNIIVPPERAKELVNKTNFVFLFAQ-YYHP 155 (345)
T ss_dssp C----CCCBCCHHHHHHHHHTTT-SCEEEEECCCSSSSCSHHHHHHHH-TBCCCCCHHHHHHHHHHHSEEEEEHH-HHCG
T ss_pred CCCCCCCCccchHHHHHHHHHHc-CCEEEECCCCCCCcccHHHHHHhC-CCCCCCCHHHHHHHHHHcCEEEEehH-HhCh
Confidence 99999985 699999999999 999999999999999999999999 99999999999999999999999998 9999
Q ss_pred hhhhhHHHhhhhC--CCCCc--hhHHH------------Hhhhhhhhc-----CCCeEEEe
Q psy1330 160 GDQILYRVRDVTA--TVDNL--SLCSA------------SILSKKVAE-----GTKYLVID 199 (221)
Q Consensus 160 ~~~~l~~lR~~lg--Ti~~~--~l~~a------------silskk~~~-----g~~~~v~d 199 (221)
+|++++++|++|| |+||+ ||+++ +.|+||++. |.++.++.
T Consensus 156 a~k~l~~~R~~lg~rTvfN~lgpL~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv 216 (345)
T 1o17_A 156 AMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILV 216 (345)
T ss_dssp GGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhcCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999999999998 99999 99999 999999999 99965553
No 8
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=6.2e-56 Score=399.04 Aligned_cols=189 Identities=22% Similarity=0.289 Sum_probs=179.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTG 85 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG 85 (221)
++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||+||++||++||++++.+++++..+ ++||||||
T Consensus 2 ~~l~k~~~g~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget~~Eiag~~~am~~~~~~~~~~~~~-~vD~~gTG 80 (329)
T 2elc_A 2 DAVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHRRP-LLDIVGTG 80 (329)
T ss_dssp CHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCCCSS-EEEEEECC
T ss_pred hHHHHHhcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCCCC-eeEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999998886323 89999999
Q ss_pred CCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCChhhh
Q psy1330 86 GVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQ 162 (221)
Q Consensus 86 Gdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P~~~ 162 (221)
|||+| +||++|+++|++|+||+|||||++||++||+|+||+| |++++++++++.+++++.|++|++++ .|||+|+
T Consensus 81 Gdg~~tfNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaDvLeaL-G~~~~~~~~~~~~~l~~~g~~fl~a~-~~hPa~k 158 (329)
T 2elc_A 81 GDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEAL-GVDLEAPPERVGEAIEELGFGFLFAR-VFHPAMR 158 (329)
T ss_dssp CCSSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHT-TCCTTCCHHHHHHHHHHHSEEEEEHH-HHCGGGG
T ss_pred CCCCCccccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHHHHHhC-CCCCCCCHHHHHHHHHHCCEEEEEhH-HhCHHHH
Confidence 99885 7999999999999999999999999999999999999 99999999999999999999999998 9999999
Q ss_pred hhHHHhhhhC--CCCCc--hhHHH------------Hhhhhhhhc-----CCCeEEE
Q psy1330 163 ILYRVRDVTA--TVDNL--SLCSA------------SILSKKVAE-----GTKYLVI 198 (221)
Q Consensus 163 ~l~~lR~~lg--Ti~~~--~l~~a------------silskk~~~-----g~~~~v~ 198 (221)
+++++|++|| |+||+ ||+++ +.|+||++. | ++.++
T Consensus 159 ~~~~~R~~lg~rTvfn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alV 214 (329)
T 2elc_A 159 HVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLV 214 (329)
T ss_dssp GTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEE
T ss_pred HHHHHHHHhCCCCHHHHHHHhcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEE
Confidence 9999999998 99999 99997 999999998 8 55444
No 9
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=2.1e-55 Score=401.84 Aligned_cols=192 Identities=24% Similarity=0.264 Sum_probs=178.5
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCC-Ccee
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPED-IVVD 80 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~-~~vD 80 (221)
+.|.++|+++.+|++||+||++++|+.|++|+++|+|+||||||+|+||||.||++||++||++++.+++++..+ .++|
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~~~~~~~~vD 103 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVD 103 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCTTCSCTTCEE
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCCccCCCCCeE
Confidence 468999999999999999999999999999999999999999999999999999999999999999999876543 3899
Q ss_pred eccCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 81 KHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 81 ~~gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
+|||||||+| |||++|+++|++|+||+|||||++||++||+|+||+| |++++++++++.+++++.|++|+++| .|
T Consensus 104 ~~gTGGdg~~T~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaL-Gv~~~l~~e~~~~~l~~~gi~fl~a~-~~ 181 (377)
T 3r88_A 104 VVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEAL-GVRIDLGPDLVARSLAEVGIGFCFAP-RF 181 (377)
T ss_dssp EEECCCCSCCBCCHHHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHT-TCCCCCCHHHHHHHHHHHSEEEEEHH-HH
T ss_pred EeCCCCCCcCccccHHHHHHHHHhcCCeEEeECCCCCCCcccHHHHHHHc-CCCcccchHHHHHHHHHhccccccch-hh
Confidence 9999999984 8999999999999999999999999999999999999 99999999999999999999999999 99
Q ss_pred ChhhhhhHHHhhhhC--CCCCchhHHHHhhhhhhhcCCCeEEEeee
Q psy1330 158 SPGDQILYRVRDVTA--TVDNLSLCSASILSKKVAEGTKYLVIDVK 201 (221)
Q Consensus 158 ~P~~~~l~~lR~~lg--Ti~~~~l~~asilskk~~~g~~~~v~dv~ 201 (221)
||+|++++++|++|| |+||+ +.++++ ++++++++++|.
T Consensus 182 hPa~k~l~~vR~~Lg~rTifN~---lgpL~N---Pa~~~~~liGv~ 221 (377)
T 3r88_A 182 HPSYRHAAAVRREIGVPTVFNL---LGPLTN---PARPRAGLIGCA 221 (377)
T ss_dssp CGGGHHHHHHHHHHCSCCGGGG---HHHHCC---TTCCSEEEEECS
T ss_pred CHHHHHHHHHHHHhccCchhhh---HHHhcC---cccccccccCCC
Confidence 999999999999999 66666 443333 379999999875
No 10
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=1.7e-55 Score=402.14 Aligned_cols=189 Identities=23% Similarity=0.284 Sum_probs=167.7
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCC--------CCC
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETL--------SWR 73 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~--------~~~ 73 (221)
++|+++|+|+.+|++||+||++++|+.|++|+++|+|+|||||++|+||||+||++||++||++++.++ +++
T Consensus 25 ~~~~~~i~kl~~G~~Lt~eEa~~~~~~il~G~~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~~~~~~~~~~~~~~~~ 104 (374)
T 1vqu_A 25 TSWYLLLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPIT 104 (374)
T ss_dssp CCTHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCC-----------C
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCccccccccccCcc
Confidence 458899999999999999999999999999999999999999999999999999999999999999988 565
Q ss_pred CC-CCceeeccCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCce
Q psy1330 74 PE-DIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCF 149 (221)
Q Consensus 74 ~~-~~~vD~~gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~ 149 (221)
.. ..++|||||||||.| +||++|+++|++|+||+|||||++||++||+|+||+| |++++++++++.+++++.||+
T Consensus 105 ~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaL-Gv~~~~~~e~~~~~l~~~gi~ 183 (374)
T 1vqu_A 105 NSPFSIIDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEAL-GVNLGASPEKVQAALQEVGIT 183 (374)
T ss_dssp CSSSCCEEEEECC---CCBCCHHHHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHT-TCCTTCCHHHHHHHHHHTSEE
T ss_pred ccCCCeeEEeCCCCCCCCccchHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhC-CCCCCCCHHHHHHHHHHCCEE
Confidence 21 138999999999885 7999999999999999999999999999999999999 999999999999999999999
Q ss_pred eecCCCcCChhhhhhHHHhhhhC--CCCCc--hhHHHHhhhhhhhcCCCeEEEee
Q psy1330 150 IVGANKQLSPGDQILYRVRDVTA--TVDNL--SLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 150 fl~a~~~~~P~~~~l~~lR~~lg--Ti~~~--~l~~asilskk~~~g~~~~v~dv 200 (221)
|++++ .|||+|++++++|++|| |+||+ ||+++ ++++++|++|
T Consensus 184 fl~a~-~~hPa~k~l~~~R~~lg~rTvfNilgpL~NP--------a~~~~qv~GV 229 (374)
T 1vqu_A 184 FLFAP-GWHPALKAVATLRRTLRIRTVFNLLGPLVNP--------LRPTGQVVGL 229 (374)
T ss_dssp EEEET-TSSGGGGGGHHHHHHHCSCCHHHHHGGGCCT--------TCCSEEEEEC
T ss_pred EEEhH-HhCHHHHHHHHHHHHhCCCCHHHHHHHhcCC--------CCCCceEEee
Confidence 99998 99999999999999998 88888 88874 4555555555
No 11
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.5e-55 Score=396.53 Aligned_cols=192 Identities=20% Similarity=0.253 Sum_probs=165.2
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeec
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKH 82 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~ 82 (221)
..+++|+|+.+|++||+||++++|+.|++|+++|+|+||||||+|+||||+||++||++||++++.+++++....++|+|
T Consensus 5 ~~~e~l~~~~~~~~Lt~eEa~~~~~~il~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~~~~~~~vD~~ 84 (346)
T 4hkm_A 5 TPQQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTDRRHMVDIV 84 (346)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCSCCTTEEEEE
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCCCccceeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999986544489999
Q ss_pred cCCCCCCc---chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcCCh
Q psy1330 83 STGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSP 159 (221)
Q Consensus 83 gtGGdg~n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~~P 159 (221)
||||||+| |||++|+++|+||+||+|||||+++|++||+|+||+| |++++++++++.+++++.|++|++++ .|||
T Consensus 85 gTGGdg~~t~niSt~~a~v~Aa~G~~V~khG~r~~ss~~GsaD~LeaL-G~~~~ls~~~~~~~l~~~g~~fl~a~-~~~P 162 (346)
T 4hkm_A 85 GTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEAL-GAVIELQPEQVAASLAQTGIGFMYAP-VHHP 162 (346)
T ss_dssp CC------CCCHHHHHHHHHHHTTCEEEEEC---------CHHHHHTT-TCCCCCCHHHHHHHHHHHSEEEECHH-HHCG
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCeeecCCCCCCCCcCHHHHHHHc-CCCcccCHHHHHHHHHhcCcchhchh-hhCh
Confidence 99999884 8999999999999999999999999999999999999 99999999999999999999999998 9999
Q ss_pred hhhhhHHHhhhhCCCCCchhHHHHhhhhhhhcCCCeEEEee
Q psy1330 160 GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDV 200 (221)
Q Consensus 160 ~~~~l~~lR~~lgTi~~~~l~~asilskk~~~g~~~~v~dv 200 (221)
+|++++++|++|| ++.+.+++.++++ ++++++++++|
T Consensus 163 a~k~l~~~R~~lg-~rT~fn~lgpL~n---Pa~~~~~v~Gv 199 (346)
T 4hkm_A 163 AMKVVAPVRREMG-VRTIFNILGPLTN---PAGSPNILMGV 199 (346)
T ss_dssp GGGGTHHHHHHHC-SCCTHHHHGGGCC---TTCCSEEEEEC
T ss_pred hHHHHhhheeccC-CCchhhhcccccC---CCCCcceEeec
Confidence 9999999999999 5555555666655 48999999975
No 12
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.29 E-value=2.6 Score=36.69 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=70.7
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc--cCCC-HHHHH-HHHHHHHhh----C-----CC
Q psy1330 4 IIELLRKKRSG-NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI--NGLT-NEETI-ALTKSMVDS----G-----ET 69 (221)
Q Consensus 4 ~~~~i~k~~~g-~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~--kget-~eEl~-g~~~am~~~----~-----~~ 69 (221)
+.+-++++..+ ..++.+-.+++-..++...+...-.-.|+-.++- +++. .+.+. .+.+.+.+. . ..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 97 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYR 97 (320)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC----CC
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccccccC
Confidence 45566677666 7899988889999999999999988888888764 4433 22211 122222221 1 12
Q ss_pred CCCCCC-CCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 70 LSWRPE-DIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 70 ~~~~~~-~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+++... +.++=++|.+|.|+. +....|..++..|.+|..-+..
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 333222 226778999999975 4444555667789999987755
No 13
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=85.47 E-value=4.8 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHhc-CC----CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCC
Q psy1330 15 NELSPGEIAKFVNLTVT-GT----AEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGET 69 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~-g~----~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~ 69 (221)
+.||.||..++...+.. +. +++.+|+.+...+.-.-.++||+.-...-|...+=+
T Consensus 42 R~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~GWP 101 (107)
T 3ol3_A 42 RSLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVGWP 101 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcCCC
Confidence 45999999999999884 22 788999999999999999999999999888877644
No 14
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.72 E-value=18 Score=30.89 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=71.6
Q ss_pred cHHHHHHHHhCCCCCCHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHcc--------CCCHHH-H-HHHHHHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSPGE----IAKFVNLTVTGTAEDSQIGAMLMAMFIN--------GLTNEE-T-IALTKSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eE----a~~~~~~il~g~~~~~Qi~AfL~alr~k--------get~eE-l-~g~~~am~~~~~ 68 (221)
.+...++++.....++++. .+++-..++...+...-.-.|+-.++-+ +.++.+ + ....+.+...-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (297)
T 1j8m_F 6 NLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNLFG 85 (297)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHHhc
Confidence 4677888888888899843 4566667889999998888888777653 345433 2 334444433321
Q ss_pred ----C-CCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCC
Q psy1330 69 ----T-LSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRG 113 (221)
Q Consensus 69 ----~-~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~ 113 (221)
. +++...+.++=++|-+|.|+. +....+..++..|.+|...+..-
T Consensus 86 ~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 86 GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 1 222211226667899999985 44445556677799999877653
No 15
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=82.52 E-value=1.7 Score=32.64 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCC
Q psy1330 15 NELSPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLS 71 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~ 71 (221)
+.||.||..++...+. +|.+++..|++++.-+.-.-.+++++.-...-|...+=++.
T Consensus 39 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~GWPl~ 96 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREEDIERVRRHLALQGWPLD 96 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHTTCCGGG
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCC
Confidence 7899999999998887 66788899999999998888899999998888888765543
No 16
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=80.92 E-value=1.7 Score=32.29 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCC
Q psy1330 15 NELSPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETL 70 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~ 70 (221)
+.||.||..++...+. +|.+++..|+++..-+.-.-.|++++.-...-|...+=++
T Consensus 37 r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~GWPl 93 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPL 93 (103)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGGCCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCC
Confidence 5799999999998887 5678889999999988888889999998888887766443
No 17
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=80.80 E-value=5.2 Score=30.02 Aligned_cols=57 Identities=11% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCC
Q psy1330 14 GNELSPGEIAKFVNLTVTG--------TAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETL 70 (221)
Q Consensus 14 g~~Lt~eEa~~~~~~il~g--------~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~ 70 (221)
.+.||.||..++...+... .+++.+|+.+..-+.-.-.|+|++.-...-|...+=++
T Consensus 38 ~R~LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~GWPl 102 (112)
T 2m0n_A 38 RRTLTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGGWPL 102 (112)
T ss_dssp CSSCCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCCTTT
T ss_pred hccCCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcCCCC
Confidence 4569999999999999753 47789999999999999999999999999888876444
No 18
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=80.35 E-value=5.3 Score=35.39 Aligned_cols=180 Identities=17% Similarity=0.109 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHH
Q psy1330 19 PGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPA 98 (221)
Q Consensus 19 ~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~v 98 (221)
.|-|+++-+.+-++-+.|+-|+ ++-.--.=|.+.+|+..+++.=.. ..++.-. + +--.+..|.+|--+--...++
T Consensus 68 le~A~~vE~ivR~~GavPATIa-iidG~~~vGL~~~ele~la~~~~~-v~K~SrR--D-l~~~~a~~~~GaTTVaaTm~l 142 (335)
T 4gim_A 68 AQTAIEVEETIRKQGAVPATIA-IIGGVMKVGLSKEEIELLGREGHN-VTKVSRR--D-LPFVVAAGKNGATTVASTMII 142 (335)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-EETTEEEESCCHHHHHHHHHHGGG-SEEECTT--T-HHHHHHTTCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCceEE-EECCEeEEcCCHHHHHHHHhcCCC-ceeeecc--c-HHHHhhcCCCccccHHHHHHH
Confidence 3444444444444444444333 222333347899999988753111 1122211 1 111234444443333333466
Q ss_pred HHhCCCcEEeecCCCCCCCCc------HHHHH--hcCC------CCCCCCCHHHHHHHHHhhCceee-cCCCcCChhhhh
Q psy1330 99 LAACGLKVPMVSGRGLDFSGG------TLDKL--ESIP------GYQVNCSTADLKAKLSEVGCFIV-GANKQLSPGDQI 163 (221)
Q Consensus 99 lAa~Gv~V~kHG~r~~ts~~G------saDvL--e~L~------Gi~~~~s~~~~~~~l~~~g~~fl-~a~~~~~P~~~~ 163 (221)
+..+|++|.-.|+-|==++.+ |+|+- ..-| |++-=++.....+.||..|+..+ |.. +..|++..
T Consensus 143 A~~AGI~VFaTGGIGGVHRgae~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~t-d~fPaFy~ 221 (335)
T 4gim_A 143 AALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQT-KALPAFFC 221 (335)
T ss_dssp HHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEETC-SBCCBTTB
T ss_pred HHHCCCcEEeeCCcCccCCCCCCCccccchHHHhccCCeEEEeecchhhccchhHHHHHHhcCceEEEecC-CCCceeec
Confidence 677999999999876444443 46763 3333 78888899999999999999766 665 88898843
Q ss_pred h-HHHhhhhCCCCCchhHHHHhhhhhhhcC-CCeEEEeeecCCCC
Q psy1330 164 L-YRVRDVTATVDNLSLCSASILSKKVAEG-TKYLVIDVKVGEAS 206 (221)
Q Consensus 164 l-~~lR~~lgTi~~~~l~~asilskk~~~g-~~~~v~dv~~g~~a 206 (221)
= ..++-.. .+++.-.++.-+..+ -..| ...++|=.|+=.-.
T Consensus 222 r~Sg~~~~~-rvd~~~e~A~i~~~~-~~lgl~~g~lvanPIP~e~ 264 (335)
T 4gim_A 222 RTSPFDVSI-RLDSASEIARAMVVK-WQSGLNGGLVVANPIPEQF 264 (335)
T ss_dssp SCCSSBCSE-EECCHHHHHHHHHHH-HHTTCCSCEEEECCCCGGG
T ss_pred cCCCCcCcc-eeCCHHHHHHHHHHH-HHcCCCCceEEeCCCCchh
Confidence 2 0000000 366665555544444 4445 46788887775543
No 19
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=78.15 E-value=28 Score=30.27 Aligned_cols=35 Identities=37% Similarity=0.304 Sum_probs=26.9
Q ss_pred ceeecc-CCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 78 VVDKHS-TGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 78 ~vD~~g-tGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+|=+.| -||.|+. ++...|..+|..|.+|+.--..
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 455554 6899985 7777788888899999987755
No 20
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=77.15 E-value=28 Score=28.29 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHccC-------CCHHHHHHHHHHHHhhCCC----C
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIG--AMLMAMFING-------LTNEETIALTKSMVDSGET----L 70 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~--AfL~alr~kg-------et~eEl~g~~~am~~~~~~----~ 70 (221)
+.++...+.++ .++++.+.++..++..+++.++- .|.-+|+.=| .+..+..-.+++|++.... +
T Consensus 6 ~~~l~~al~~~---d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~lw~~g~i~v~q~~~aa~~~~~~l~~l~~~l 82 (215)
T 3ezx_A 6 FDKLRDAIVNQ---NVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGDKFEAAEIFLPQIMMSGKAMSNAMEVLTPEL 82 (215)
T ss_dssp HHHHHHHHHTT---CTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666 66788888888887667776654 3444544322 3444444445555432111 1
Q ss_pred CC----CCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 71 SW----RPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 71 ~~----~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
+. +...+.+=+...+||..- =-..++.++...|+.|.--| . +.+++++.+...+
T Consensus 83 ~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG-------------------~--~vp~e~iv~~~~~ 141 (215)
T 3ezx_A 83 EKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLG-------------------V--DVLNENVVEEAAK 141 (215)
T ss_dssp TSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECC-------------------S--SCCHHHHHHHHHH
T ss_pred hhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcC-------------------C--CCCHHHHHHHHHH
Confidence 11 111123334445778664 33467778889999987433 2 4578888888888
Q ss_pred hCceeecC--CCcCChhhhhhHHHhhhhC--CC-CCch-hHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 146 VGCFIVGA--NKQLSPGDQILYRVRDVTA--TV-DNLS-LCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 146 ~g~~fl~a--~~~~~P~~~~l~~lR~~lg--Ti-~~~~-l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
.+.-++.. +-...|.+..+..+.+.+. -. .+++ .+-....+..++. ++|...+.+|..+|-++|+
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~a~---------~iGad~~~~dA~~av~~a~ 212 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKWIE---------EIGADATAENAAEAAKVAL 212 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHHHH---------HHTCCBCCSSHHHHHHHHH
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHH---------HhCCeEEECCHHHHHHHHH
Confidence 76654444 4233444444444333332 02 1232 2223334443331 4588888999999999987
Q ss_pred hC
Q psy1330 220 LL 221 (221)
Q Consensus 220 ~~ 221 (221)
.+
T Consensus 213 ~l 214 (215)
T 3ezx_A 213 EV 214 (215)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 21
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=76.87 E-value=2.2 Score=31.41 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHH--------hcCCCCHHHHHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLT--------VTGTAEDSQIGAMLMA 45 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~i--------l~g~~~~~Qi~AfL~a 45 (221)
.|.+++++|+++++-.+ ...++||+|+++|=..
T Consensus 58 ~G~~~~~d~ARE~vYGMpy~eWKa~~Q~eAt~eQ~aafe~~ 98 (104)
T 3fyb_A 58 QGVELDYDGAREYVYGMPFAEWKTLYQKPASEAQLAAFEAK 98 (104)
T ss_dssp HTCCCCHHHHHHHHHSSCHHHHHHHHCCCCCHHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHHHHh
Confidence 37899999999998654 5788999999999554
No 22
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=76.39 E-value=1.7 Score=38.21 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=96.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEE
Q psy1330 28 LTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVP 107 (221)
Q Consensus 28 ~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~ 107 (221)
.+-++-+.|+-|+ ++-.--.=|.+.+|+..+++. +...+++-. + +--.++.|.+|--+--...+++..+|++|.
T Consensus 58 ~vR~~GavPATIa-i~~G~~~VGL~~~eLe~la~~--~~~~K~SrR--D-l~~~~a~g~~GaTTVaaTm~lA~~AGI~VF 131 (316)
T 4ex8_A 58 AVRGAGAVPATIG-IAGGKLVVGLTDSLIERFAST--KGIPKISAR--D-IGGALAGGGLGATTVAGTIVIAERAGIQVF 131 (316)
T ss_dssp HHHTTTCEEEEEE-EETTEEEESCCHHHHHHHHHC--TTCCEECGG--G-HHHHHHHCSCBEECHHHHHHHHHHHTCCEE
T ss_pred HHHHcCCCcceEE-EECCEEEEcCCHHHHHHHhcC--CCccccchh--h-HHHHHhCCCCccccHHHHHHHHHHCCCcEE
Confidence 3344444444444 333333457899999999762 112222211 1 222345566554433344466677899999
Q ss_pred eecCCCCCCCCc------HHHHHh--cCC------CCCCCCCHHHHHHHHHhhCceee-cCCCcCChhhhhh-HHHhhhh
Q psy1330 108 MVSGRGLDFSGG------TLDKLE--SIP------GYQVNCSTADLKAKLSEVGCFIV-GANKQLSPGDQIL-YRVRDVT 171 (221)
Q Consensus 108 kHG~r~~ts~~G------saDvLe--~L~------Gi~~~~s~~~~~~~l~~~g~~fl-~a~~~~~P~~~~l-~~lR~~l 171 (221)
-.|+-|==++.+ |+|+.| .-| |++-=++.....+.||..|+..+ |.. +..|++..= ..++-.
T Consensus 132 aTGGiGGVHRgae~t~DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy~t-d~fPaFy~r~Sg~~~p- 209 (316)
T 4ex8_A 132 TTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGAKSILDHRLTAEYLETAGVPVYGYRT-DKLAAFVVREADVPVT- 209 (316)
T ss_dssp ECSCBCCBBTTHHHHCCBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHHHHHTTCCEEEETC-SBCCBTTBSCCSCBCE-
T ss_pred EeCCccccCCCCCCCcchhhhHHHhcCCCeEEEecccchhhcchHHHHHHHhCCceEEEecC-CCCceeeeCCCCCcCC-
Confidence 999876333332 467644 222 77878899999999999999766 565 788887432 111111
Q ss_pred CCCCCchhHHHHhhhhhhhcC-CCeEEEeeecCCC
Q psy1330 172 ATVDNLSLCSASILSKKVAEG-TKYLVIDVKVGEA 205 (221)
Q Consensus 172 gTi~~~~l~~asilskk~~~g-~~~~v~dv~~g~~ 205 (221)
.+++.-.++. ++--+-..| ...++|-+|+=+-
T Consensus 210 -r~d~~~e~A~-~~~a~~~lgl~~g~lvanPiP~e 242 (316)
T 4ex8_A 210 -RMDDLHTAAR-AAEAHWQVNGPGTVLLTSPIDEQ 242 (316)
T ss_dssp -EESSHHHHHH-HHHHHHHHHCSCEEEEECCCCGG
T ss_pred -CCCCHHHHHH-HHHHHHHhCCCCeEEEEcCCChh
Confidence 2555555544 443333344 3567887777553
No 23
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.23 E-value=39 Score=28.96 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCC---CCCCCC-CCce
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGET---LSWRPE-DIVV 79 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~---~~~~~~-~~~v 79 (221)
+.+-++++..|+.++.+-.+++-..++...++..-.-.|+-.++- .+++-...+.+.+.+.... +++... +.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi 107 (306)
T 1vma_A 30 FFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEE--KDGDALESLKEIILEILNFDTKLNVPPEPPFVI 107 (306)
T ss_dssp THHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTT--CCSCHHHHHHHHHHHHTCSCCCCCCCSSSCEEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHhCCCCCCcccCCCCeEE
Confidence 345566666666899988899999999999999888888887765 3333223344555544322 222211 2267
Q ss_pred eeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 80 DKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 80 D~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
=++|.+|.|+. +.-..|-.++..|.+|..-+..
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 78999999974 3333444555678888877654
No 24
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=74.60 E-value=3.3 Score=36.09 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCCCCCC---CcHHHHHh-
Q psy1330 50 GLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFS---GGTLDKLE- 125 (221)
Q Consensus 50 get~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~~ts~---~GsaDvLe- 125 (221)
|.+.||+..++ .+...+++-. + +--.++.|.+|--+--...+++..+|++|.-.|+-|==++ -=|+|+-|
T Consensus 73 GL~~~eLe~la---~~~~~K~SrR--D-l~~~~a~g~~GaTTVaaTm~lA~~AGI~VFaTGGiGGVHRgt~DISaDL~eL 146 (297)
T 1vkm_A 73 GMSEEELEAMM---REGADKVGTR--E-IPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEM 146 (297)
T ss_dssp SCCHHHHHHHH---HHCCEEECGG--G-HHHHHHHTCCEEECHHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHH
T ss_pred CCCHHHHHHHh---cCCCccccHh--h-HHHHHhCCCCchhhHHHHHHHHHHcCCcEEEecccccccCCCcccchhHHHh
Confidence 68899999887 2222233221 1 2223455555543333344666678999999986542222 22577744
Q ss_pred -cCC------CCCCCCCHHHHHHHHHhhCceee-cCCCcCChhhhhh-HHHhhhhCCCCCchhHHHHhhhhhhhcC-CCe
Q psy1330 126 -SIP------GYQVNCSTADLKAKLSEVGCFIV-GANKQLSPGDQIL-YRVRDVTATVDNLSLCSASILSKKVAEG-TKY 195 (221)
Q Consensus 126 -~L~------Gi~~~~s~~~~~~~l~~~g~~fl-~a~~~~~P~~~~l-~~lR~~lgTi~~~~l~~asilskk~~~g-~~~ 195 (221)
.-| |++-=++.....+.||..|+..+ |.. +..|++..= ..++-. .+++...++. ++--+-..| ...
T Consensus 147 ~rTpV~VVcaG~KsILDi~~TLE~LET~GV~Vvgy~t-~~fPaF~tr~Sg~~~p--~~d~~~e~A~-~~~~~~~lgl~~g 222 (297)
T 1vkm_A 147 SSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRT-NEFPLFFSRKSGRRVP--RIENVEEVLK-IYESMKEMELEKT 222 (297)
T ss_dssp TTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESC-SBCCBTTBSCCSCBCC--EECSHHHHHH-HHHHHHHTTCCSE
T ss_pred cCCCeEEEecccchhhcchhHHHHHHhCCceEEEecC-CCCCceecCCCCCcCC--CCCCHHHHHH-HHHHHHHhCCCCe
Confidence 222 78878899999999999999765 555 788877432 111111 2566555544 444444556 447
Q ss_pred EEEeeecCCC
Q psy1330 196 LVIDVKVGEA 205 (221)
Q Consensus 196 ~v~dv~~g~~ 205 (221)
+++-+|+=+-
T Consensus 223 ~lvanPiP~e 232 (297)
T 1vkm_A 223 LMVLNPVPEE 232 (297)
T ss_dssp EEEECCCCGG
T ss_pred EEEEcCCChh
Confidence 7877776553
No 25
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.55 E-value=55 Score=29.53 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHc--c------CCCHHH-HH-HHHHHHHhhC--
Q psy1330 4 IIELLRKKRSGNELSPGEI----AKFVNLTVTGTAEDSQIGAMLMAMFI--N------GLTNEE-TI-ALTKSMVDSG-- 67 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa----~~~~~~il~g~~~~~Qi~AfL~alr~--k------get~eE-l~-g~~~am~~~~-- 67 (221)
+...++++.....||++.. +++-..++...+...-.-.|+-.++- . +.++.+ +. .+.+.+...-
T Consensus 9 l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~ 88 (425)
T 2ffh_A 9 LQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGG 88 (425)
T ss_dssp HHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 4566677777778997554 44556778899999888888877654 2 234432 32 2333333322
Q ss_pred --CCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 68 --ETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 68 --~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
..+++. .+.++=++|.+|.|+. ++...+..++..|.+|...+..
T Consensus 89 ~~~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 89 EARLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SCCCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CcccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 123333 2236777899999975 4555566667779999988764
No 26
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.50 E-value=61 Score=29.17 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=70.6
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHHhcCCCCHHHHHHHHHHHHc--cC------CCHH-H-HHHHHHHHHhhC--
Q psy1330 4 IIELLRKKRSGNELSPGEI----AKFVNLTVTGTAEDSQIGAMLMAMFI--NG------LTNE-E-TIALTKSMVDSG-- 67 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa----~~~~~~il~g~~~~~Qi~AfL~alr~--kg------et~e-E-l~g~~~am~~~~-- 67 (221)
+...++++.....||++.. +++-..++...+...-.-.|+-.++- .| .++. + ...+.+.+.+..
T Consensus 9 l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (433)
T 2xxa_A 9 LSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGE 88 (433)
T ss_dssp HHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhcc
Confidence 5566777777788999644 45555778889999888888877754 22 2221 1 222333333321
Q ss_pred --CCCCCCC-CCCceeeccCCCCCCc-chhhHHHHHHhC-CCcEEeecCCCCCCCCcHHH
Q psy1330 68 --ETLSWRP-EDIVVDKHSTGGVGDK-VSIPLVPALAAC-GLKVPMVSGRGLDFSGGTLD 122 (221)
Q Consensus 68 --~~~~~~~-~~~~vD~~gtGGdg~n-iSt~~a~vlAa~-Gv~V~kHG~r~~ts~~GsaD 122 (221)
..+.... .+.++=++|.||.|+. ++.-.|..++.. |.+|..--..- .+.++.+
T Consensus 89 ~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~--~r~~a~~ 146 (433)
T 2xxa_A 89 ENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV--YRPAAIK 146 (433)
T ss_dssp SSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC--SSTTHHH
T ss_pred ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC--CCccHHH
Confidence 1222221 1236777899999974 555566667777 99999876553 3344444
No 27
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=65.16 E-value=9.4 Score=32.01 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=26.5
Q ss_pred ceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeecC
Q psy1330 78 VVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVSG 111 (221)
Q Consensus 78 ~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG~ 111 (221)
+|=+.|+ ||.|+. ++.-.|..+|..|.+|..--.
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 5666665 788985 778888899999999997543
No 28
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=64.47 E-value=19 Score=21.15 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 35 EDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 35 ~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
+.+|.-||--.+++.+.|.|+--++++.+++.
T Consensus 2 ~~~qQnaFYevLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 2 NMQCQRRFYEALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHhHHHHHhcc
Confidence 56788999999999999999999999988763
No 29
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=63.30 E-value=8.6 Score=32.75 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.6
Q ss_pred ceeeccC-CCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 78 VVDKHST-GGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 78 ~vD~~gt-GGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+|=+.|+ ||.|+. ++.-.|..+|..|.+|+.--..
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 6666776 788985 8888888999999999986533
No 30
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=60.05 E-value=3.3 Score=30.53 Aligned_cols=33 Identities=27% Similarity=0.172 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHHHH--------hcCCCCHHHHHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLT--------VTGTAEDSQIGAMLMA 45 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~i--------l~g~~~~~Qi~AfL~a 45 (221)
.|.+++++|+++++..+ ...++||+|+++|-..
T Consensus 59 ~G~~~~~d~ARE~vYGMpy~eWKa~~Q~eAt~eQ~aaf~~~ 99 (105)
T 2o35_A 59 SGVPMSKEESREIVYGMPYEEWRTQNQGEASPEQKAAFERN 99 (105)
T ss_dssp TTCCCCHHHHHHHHHSSCHHHHTC-----------------
T ss_pred cCCcCCHHHHHHHHhCCCHHHHHHHHCCCCCHHHHHHHHHh
Confidence 47899999999998765 3667999999999443
No 31
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=59.34 E-value=1e+02 Score=27.83 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=68.3
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHH----HHHHHhcCCCCHHHHHHHHHHHHcc--------CCCHH-HH-HHHHHHHHhhC
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAK----FVNLTVTGTAEDSQIGAMLMAMFIN--------GLTNE-ET-IALTKSMVDSG 67 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~----~~~~il~g~~~~~Qi~AfL~alr~k--------get~e-El-~g~~~am~~~~ 67 (221)
+.+...++++.....||.+...+ +-..++..++...-.-.|.-.++-+ +.++. .+ ..+.+.+.+..
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 35778899998888999988754 4455677888877666666555432 23432 22 22334444321
Q ss_pred C-----CCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 68 E-----TLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 68 ~-----~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
. ..+....+.++=++|.+|.|+. +..-.|..++..|.+|..-+..
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 1 1111111237788899999974 4444555667789999887755
No 32
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=58.67 E-value=14 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.3
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
|+.+.+.|++++..+.+|++|..+.+. ++...++.+.
T Consensus 1 m~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e 37 (71)
T 1zug_A 1 MQTLSERLKKRRIALKMTQTELATKAG------VKQQSIQLIE 37 (71)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHH
Confidence 778889999999999999999887762 4555555444
No 33
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=53.83 E-value=17 Score=32.44 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=60.6
Q ss_pred HHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC--------c--ch-hhHHHHHH
Q psy1330 39 IGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD--------K--VS-IPLVPALA 100 (221)
Q Consensus 39 i~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~--------n--iS-t~~a~vlA 100 (221)
..+++.+...+|+| .+++....++|++.+..+.+.. .+-+.|.+..+. + .| .+++.+++
T Consensus 26 ~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~---~~~I~~~~~~~~~~~~d~~~~~ras~~l~~alla 102 (419)
T 1ejd_A 26 LPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG---SVWIDASNVNNFSAPYDLVKTMRASIWALGPLVA 102 (419)
T ss_dssp HHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS---SEEEECTTCCCCEECHHHHTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc---eEEEecCCCCCCcCchHHhhhhhHHHHHHHHHhh
Confidence 34566666777754 5889999999999998886442 233344332111 1 11 34555666
Q ss_pred hCC-CcEEeecCCCCCCCCc--HHHHHhcCCCCCCCC
Q psy1330 101 ACG-LKVPMVSGRGLDFSGG--TLDKLESIPGYQVNC 134 (221)
Q Consensus 101 a~G-v~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~~ 134 (221)
..| ..|...|+..+..+-- -.|.|+.+ |++++.
T Consensus 103 ~~~~~~v~l~G~~~l~~rp~~~~~~~L~~m-Ga~i~~ 138 (419)
T 1ejd_A 103 RFGQGQVSLPGGCAIGARPVDLHIFGLEKL-GAEIKL 138 (419)
T ss_dssp HHSEEEEECCCCSCCSSCTTHHHHHHHHHT-TCEEEE
T ss_pred cCCceEEEecCCcccCCCchHHHHHHHHHC-CCEEEE
Confidence 555 6888889888766543 46999999 998863
No 34
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=53.57 E-value=85 Score=28.18 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.4
Q ss_pred cHHHHHHHHhCCCCCCH----HHHHHHHHHHhcCCCCHHHHHHHHHHHHcc--------CCCHHH-HHHHH-HHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSP----GEIAKFVNLTVTGTAEDSQIGAMLMAMFIN--------GLTNEE-TIALT-KSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~----eEa~~~~~~il~g~~~~~Qi~AfL~alr~k--------get~eE-l~g~~-~am~~~~~ 68 (221)
.+...++++.....+|. +-.+++...+++.++.....-.|.-.++-+ +.++.+ +.... +.+.+...
T Consensus 7 ~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 86 (432)
T 2v3c_C 7 NLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLG 86 (432)
T ss_dssp HHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHhC
Confidence 35667788877677887 556788889999999999999988777753 234443 33322 23333221
Q ss_pred ----CCCCC-CCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCC
Q psy1330 69 ----TLSWR-PEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRG 113 (221)
Q Consensus 69 ----~~~~~-~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~ 113 (221)
++.+. ..+.++=++|-+|.|+. ++...+..++..|.+|..-....
T Consensus 87 ~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 87 EEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 12222 11236778999999975 34444455556688998776553
No 35
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=53.43 E-value=14 Score=29.44 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=24.6
Q ss_pred ceeecc-CCCCCCc-chhhHHHHHHhC-CCcEEeecC
Q psy1330 78 VVDKHS-TGGVGDK-VSIPLVPALAAC-GLKVPMVSG 111 (221)
Q Consensus 78 ~vD~~g-tGGdg~n-iSt~~a~vlAa~-Gv~V~kHG~ 111 (221)
+|=+.| -||.|+. ++...|..+|.. |.+|+.--.
T Consensus 6 vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 6 VFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 344444 4888985 777788888888 999998543
No 36
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=52.33 E-value=22 Score=24.60 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCC-----CCHHHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLTVTGT-----AEDSQIGAML 43 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~il~g~-----~~~~Qi~AfL 43 (221)
.|...|.+..+..+..|.+++ +||.+|+..|
T Consensus 12 ~g~~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L 47 (76)
T 2ahq_A 12 SAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANIL 47 (76)
T ss_dssp SCCSCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 577899999999999999888 9999999888
No 37
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=51.71 E-value=37 Score=26.99 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHccCC-------CHHHHHHHHHHHHhhCCCC-
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIG--AMLMAMFINGL-------TNEETIALTKSMVDSGETL- 70 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~--AfL~alr~kge-------t~eEl~g~~~am~~~~~~~- 70 (221)
|+.+.++.+.+.++ +.+++.+.++..++...++.++- -++-+|+.=|+ +..+..-.++.|++....+
T Consensus 1 m~~~~~l~~al~~~---d~~~~~~~~~~al~~g~~~~~i~~~~l~p~m~~vG~~w~~g~~~~~~~~~~~~~~~~~l~~l~ 77 (210)
T 1y80_A 1 MPTYEELSQAVFEG---DEAQVVELTRSLLSGGAEPLEVINKGLIAGMDRVGVLFKNNEMFVPEVLMSANAMNAGVEVVK 77 (210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCceeHHHHHHHHHHHHHHHHHHH
Confidence 55555566666655 56677777777765544443332 34444443332 3444444455555443221
Q ss_pred ---CCC--CCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy1330 71 ---SWR--PEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLS 144 (221)
Q Consensus 71 ---~~~--~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~ 144 (221)
..+ ...+.+=+.+.+||... =-..++.++...|+.|.--|. +.+++++.+.++
T Consensus 78 ~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---------------------~vp~~~l~~~~~ 136 (210)
T 1y80_A 78 QSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---------------------DIEPGKFVEAVK 136 (210)
T ss_dssp -------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---------------------SBCHHHHHHHHH
T ss_pred HHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---------------------CCCHHHHHHHHH
Confidence 111 11123333445677654 335667788889999875552 357888888888
Q ss_pred hhCceeecCCC---cCChhhhhhH-HHhhhhCCCC-CchhHH-HHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHH
Q psy1330 145 EVGCFIVGANK---QLSPGDQILY-RVRDVTATVD-NLSLCS-ASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMA 218 (221)
Q Consensus 145 ~~g~~fl~a~~---~~~P~~~~l~-~lR~~lgTi~-~~~l~~-asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la 218 (221)
+.+.-.+..+- ...|.++++. .+|+. | .+ +++.++ ....+..++ -++|.....+|..+|.++|
T Consensus 137 ~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~-~-~~~~~~v~vGG~~~~~~~~---------~~~gad~~~~da~~av~~~ 205 (210)
T 1y80_A 137 KYQPDIVGMSALLTTTMMNMKSTIDALIAA-G-LRDRVKVIVGGAPLSQDFA---------DEIGADGYAPDAASATELC 205 (210)
T ss_dssp HHCCSEEEEECCSGGGTHHHHHHHHHHHHT-T-CGGGCEEEEESTTCCHHHH---------HHHTCSEECSSHHHHHHHH
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHhc-C-CCCCCeEEEECCCCCHHHH---------HHcCCeEEECCHHHHHHHH
Confidence 77664443321 2334454443 34433 2 21 222221 111222221 2345556677888888887
Q ss_pred Hh
Q psy1330 219 EL 220 (221)
Q Consensus 219 ~~ 220 (221)
+.
T Consensus 206 ~~ 207 (210)
T 1y80_A 206 RQ 207 (210)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 38
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=49.09 E-value=26 Score=31.35 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC----------CCc---chhhHH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV----------GDK---VSIPLV 96 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd----------g~n---iSt~~a 96 (221)
.+.-+++.+...+|+| .+++..+.++|++.+..+.... . .+-+.|.+.. ..+ .+-+++
T Consensus 22 ~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~-~-~~~I~g~~~~~~~~p~~~id~~~sgt~~rll~ 99 (427)
T 1rf6_A 22 ISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD-G-VITVQGVGMAGLKAPQNALNMGNSGTSIRLIS 99 (427)
T ss_dssp HHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-T-EEEEECCCSSCCCCCSSCEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecC-C-EEEEECCCCCCcCCCcceeeccccchHHHHHH
Confidence 4567788888888864 5789999999999998876432 1 2344443211 112 112444
Q ss_pred HHHHhCCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCCC
Q psy1330 97 PALAACGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVNC 134 (221)
Q Consensus 97 ~vlAa~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~~ 134 (221)
.+++..+.+|...|...+..+- --.|.|+++ |++++.
T Consensus 100 a~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~m-Ga~i~~ 138 (427)
T 1rf6_A 100 GVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKM-GVSISG 138 (427)
T ss_dssp HHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHT-TCEEEE
T ss_pred HHHhcCCcEEEEeCCCccCCCCHHHHHHHHHHC-CCEEEE
Confidence 5556667899999987765443 357999999 998864
No 39
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=49.03 E-value=29 Score=28.19 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHHHHHhCCC---CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhC
Q psy1330 6 ELLRKKRSGN---ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67 (221)
Q Consensus 6 ~~i~k~~~g~---~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~ 67 (221)
+++..+.+++ .=+.+..+..++.++...++-..++.+.++-+.|..|+++-..|+++++++.
T Consensus 41 ~vl~~lk~~~~~~~~~~~~~~~~v~~~l~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L 105 (211)
T 2qgu_A 41 DVLATIKGDPDLRGGNLQKVFQLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLL 105 (211)
T ss_dssp HHHHHHHTCHHHHTTCHHHHHHHHHHHTGGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccccCHHHHHHHHHHHhhhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHH
Confidence 3444444442 2367888999999999999999999999999999999999999999998764
No 40
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=47.70 E-value=18 Score=33.17 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-----------chhhHHHHHHhCC-CcEEeecCCCCC----C
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-----------VSIPLVPALAACG-LKVPMVSGRGLD----F 116 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-----------iSt~~a~vlAa~G-v~V~kHG~r~~t----s 116 (221)
.+++..+.++|++.+..+++......+.+.|.|..+.. ...+..+++|.+| .++...|+..+. .
T Consensus 59 s~D~~~~~~~l~~lG~~i~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~ts~~~l~~l~a~~~~~~~~l~G~~~l~~~~~~ 138 (479)
T 4fqd_A 59 IVETAVLGEIFRAAGAHAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSASGGCPIGEGPRG 138 (479)
T ss_dssp SHHHHHHHHHHHHTTCEEEEETTTTEEEEECTTCCCSCCCHHHHTTCSGGGGGHHHHHHHTSEEEECC------------
T ss_pred chhHHHHHHHHHHcCCEEEEecCCCEEEEECCCCCCCCCChhHhcccchhHHHHHHHHhcCCCeEEEEeCCcccccCCCC
Confidence 78999999999999999887201225677776654331 2246677788877 488899988876 3
Q ss_pred CC-c-HHHHHhcCCCCCCCC
Q psy1330 117 SG-G-TLDKLESIPGYQVNC 134 (221)
Q Consensus 117 ~~-G-saDvLe~L~Gi~~~~ 134 (221)
+- + -.|.|++| |+++..
T Consensus 139 RPi~~~~~~L~~l-Ga~i~~ 157 (479)
T 4fqd_A 139 RPDEHLLDVMGRF-GVTTRL 157 (479)
T ss_dssp CCCHHHHHHHHTT-TCEEEE
T ss_pred CChHHHHHHHHHC-CCEEEe
Confidence 32 3 46899999 998763
No 41
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.41 E-value=29 Score=22.09 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=37.3
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
|..+.+.|++++..+.+|++|..+.+. ++...++.+.-.- +..+.+.+..+++++
T Consensus 3 m~~~~~~l~~~r~~~gls~~~lA~~~g------is~~~i~~~e~g~--~~~~~~~l~~ia~~l 57 (76)
T 1adr_A 3 TQLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWERSE--TEPNGENLLALSKAL 57 (76)
T ss_dssp SCCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTS--SCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCC--CCCCHHHHHHHHHHH
Confidence 446778888888888999999887763 5666666655431 224666666666554
No 42
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=45.02 E-value=56 Score=24.29 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=32.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHHHH
Q psy1330 7 LLRKKRSGNELSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEETI 57 (221)
Q Consensus 7 ~i~k~~~g~~Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eEl~ 57 (221)
.++.+...-.++++|.+++++.+ -+|.++..++..+|..+.-.+.+.+++.
T Consensus 12 ~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~ 66 (190)
T 1g8i_A 12 VVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFAT 66 (190)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHH
Confidence 45555555677888888777766 3667777887777776633344444433
No 43
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=43.78 E-value=32 Score=21.27 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=34.0
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHH
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKS 62 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~a 62 (221)
|..+.+.|+.++..+.+|++|..+.+. ++...++.+.-. -+..+.+.+..++++
T Consensus 3 m~~~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g--~~~~~~~~l~~i~~~ 56 (68)
T 2r1j_L 3 TQLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWERS--ETEPNGENLLALSKA 56 (68)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTT--SSCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------CCHHHHHHHHcC--CCCCCHHHHHHHHHH
Confidence 446778888888888999999887763 555555554433 112345555555444
No 44
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=43.56 E-value=51 Score=24.53 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHH
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEE 55 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eE 55 (221)
..++.+.....+|++|.+++++.+ -+|.++..++..+|..+...+.+.++
T Consensus 11 ~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~ 64 (190)
T 1fpw_A 11 DDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDF 64 (190)
T ss_dssp HHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHH
Confidence 345666666788998888887766 47788888888887776433333333
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=42.88 E-value=1.4e+02 Score=27.49 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHHhCCCCCCHHH----HHHHHHHHhcCCCCHHHHHHHHHHHH--ccCC------CHHH-HH-HHHHHHHhhCC---
Q psy1330 6 ELLRKKRSGNELSPGE----IAKFVNLTVTGTAEDSQIGAMLMAMF--INGL------TNEE-TI-ALTKSMVDSGE--- 68 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eE----a~~~~~~il~g~~~~~Qi~AfL~alr--~kge------t~eE-l~-g~~~am~~~~~--- 68 (221)
..++++.....+|++. .+++-..++...+.....-.|.-.++ ..++ ++.+ +. .+.+.+.+...
T Consensus 12 ~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~ 91 (504)
T 2j37_W 12 SALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGV 91 (504)
T ss_dssp TTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhcccc
Confidence 3444555556789887 45555666777777666666665544 2332 3322 22 23333333221
Q ss_pred -CCCCC-CCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHH
Q psy1330 69 -TLSWR-PEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKL 124 (221)
Q Consensus 69 -~~~~~-~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvL 124 (221)
.+.+. ..+.+|=++|.+|.|+. ++...+..++..|.+|..-...- .+.++.|-|
T Consensus 92 ~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~--~r~aa~~qL 148 (504)
T 2j37_W 92 KAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT--FRAGAFDQL 148 (504)
T ss_dssp CCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC--SSSHHHHHH
T ss_pred chhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc--cchhHHHHH
Confidence 22221 11236778999999974 33333444556699988776543 344554433
No 46
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=42.56 E-value=1.3e+02 Score=25.45 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHhhCceeecC---CCcCChhhhhhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEEe
Q psy1330 130 YQVNCSTADLKAKLSEVGCFIVGA---NKQLSPGDQILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVID 199 (221)
Q Consensus 130 i~~~~s~~~~~~~l~~~g~~fl~a---~~~~~P~~~~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~d 199 (221)
++-+.+|.++.+..++.|...+.. +..|.-....+..+|+... =|....++-.. .++|||.++|+
T Consensus 75 i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea-----~~~GAD~VlLi 149 (272)
T 3tsm_A 75 IRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEA-----RSWGADCILII 149 (272)
T ss_dssp SCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHH-----HHTTCSEEEEE
T ss_pred cCCCCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHH-----HHcCCCEEEEc
Confidence 566789999999999998765533 3356677778999998765 11222233322 36899999999
Q ss_pred eecCCCCCCCCHHHHHHH
Q psy1330 200 VKVGEASFFKTYEKAKEM 217 (221)
Q Consensus 200 v~~g~~a~~~~~~~a~~l 217 (221)
...= +.++.++|
T Consensus 150 ~a~L------~~~~l~~l 161 (272)
T 3tsm_A 150 MASV------DDDLAKEL 161 (272)
T ss_dssp TTTS------CHHHHHHH
T ss_pred cccc------CHHHHHHH
Confidence 8632 44555554
No 47
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.36 E-value=44 Score=21.32 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+.+.|+.++..+.+|+.|..+.+. ++...++.+.-.-+ +..+.+.+..+++++
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~g------is~~~i~~~e~g~~-~~~~~~~l~~ia~~l 60 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAG------LNQSTVNAMFEGRS-KRPTITTIRKVCGTL 60 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHCTTC-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCC-CCCCHHHHHHHHHHc
Confidence 677888888889999999887763 56666666654421 245677777777665
No 48
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=41.60 E-value=29 Score=26.06 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHHHH
Q psy1330 7 LLRKKRSGNELSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEETI 57 (221)
Q Consensus 7 ~i~k~~~g~~Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eEl~ 57 (221)
.++.+...-.+|.+|.++++..+ -+|.++..++..+|..+.....+.+++.
T Consensus 12 ~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~ 66 (193)
T 1bjf_A 12 VMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAE 66 (193)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCcCChHHHHH
Confidence 34444444568888888877776 3566777777766655433333333333
No 49
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=40.19 E-value=35 Score=30.91 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc-----------chhhHHHHHHhCC-CcEEeecCCCCCCCC-c
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK-----------VSIPLVPALAACG-LKVPMVSGRGLDFSG-G 119 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n-----------iSt~~a~vlAa~G-v~V~kHG~r~~ts~~-G 119 (221)
.+++..+.+++++.+..+++.. . .+.+.|.|..+.. ...+..+++|..| .++...|+..+..+- +
T Consensus 72 ~~D~~~~~~~l~~lG~~i~~~~-~-~~~i~~~~~~~~~~~~~~~~~~Ras~l~l~~l~a~~~~~~~~l~G~~~l~~RPi~ 149 (454)
T 3r38_A 72 LSDVFTINEVLKYLNADVSFVN-D-EVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVD 149 (454)
T ss_dssp CHHHHHHHHHHHHTTCEEEEET-T-EEEEECCSCCCCEECSHHHHHCGGGGGGHHHHHHHHSEEEEECCCCCSSSSCCSH
T ss_pred cHHHHHHHHHHHHCCCEEEEEC-C-EEEEECCCCCCCcCChhHhhccchHHHHHHHHHhCCCCeEEEeCCCcccccCCHH
Confidence 6899999999999999988753 2 5677776544332 1236667778777 589999999887654 3
Q ss_pred -HHHHHhcCCCCCCCC
Q psy1330 120 -TLDKLESIPGYQVNC 134 (221)
Q Consensus 120 -saDvLe~L~Gi~~~~ 134 (221)
..|.|+++ |++++.
T Consensus 150 ~~~~~L~~l-Ga~i~~ 164 (454)
T 3r38_A 150 LHLKGFEAM-GAVVKI 164 (454)
T ss_dssp HHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHC-CCEEEe
Confidence 56999999 998863
No 50
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=40.19 E-value=29 Score=31.10 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=61.4
Q ss_pred HHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC--------c---chhhHHHHHHhC
Q psy1330 41 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD--------K---VSIPLVPALAAC 102 (221)
Q Consensus 41 AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~--------n---iSt~~a~vlAa~ 102 (221)
+++.+.-.+|+| .+++..+.+++++.+..++++. . .+-+.| |..+. + ...+..+++|.+
T Consensus 37 ~l~~aaLa~g~~~i~n~~~~~D~~~~~~~l~~lG~~i~~~~-~-~~~i~~-~~~~~~~p~~~~~~~rts~~~l~~l~a~~ 113 (425)
T 2yvw_A 37 IMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLN-N-TVFINP-SINSFITNQEIIRRMRASVLSLGPLLGRF 113 (425)
T ss_dssp HHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEET-T-EEEEEC-CCCCCEECHHHHHHCGGGGGGHHHHHHHH
T ss_pred HHHHHHhCCCCEEEecCCchHHHHHHHHHHHHCCCEEEEeC-C-EEEEEC-CCCCCCCchhhhcccchHHHHHHHHhccC
Confidence 445554556654 6889999999999999887543 2 334445 43222 1 224666777877
Q ss_pred C-CcEEeecCCCCCCCC-c-HHHHHhcCCCCCCCC
Q psy1330 103 G-LKVPMVSGRGLDFSG-G-TLDKLESIPGYQVNC 134 (221)
Q Consensus 103 G-v~V~kHG~r~~ts~~-G-saDvLe~L~Gi~~~~ 134 (221)
| .++...|+..+..+- + -.|.|++| |++++.
T Consensus 114 ~~~~~~l~G~~~l~~RPi~~~~~~L~~l-Ga~i~~ 147 (425)
T 2yvw_A 114 GRAVVGLPGGCSIGARPIDQHLKFFKEA-GADVEV 147 (425)
T ss_dssp SEEEEECCCCBTTBCCCCHHHHHHHHHT-TCEEEE
T ss_pred CcEEEEECCCcccccCCHHHHHHHHHHC-CCEEEe
Confidence 6 599999998886654 3 46999999 998753
No 51
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=39.41 E-value=37 Score=30.50 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCC----------Cc---chhhHH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVG----------DK---VSIPLV 96 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg----------~n---iSt~~a 96 (221)
.+.-+++.|.-.+|+| .+++..+.++|++.+..+.+.. . .+-+.|.+..+ .| ..-+.+
T Consensus 25 ~t~r~ll~A~La~g~t~i~n~~~~~dv~~~~~~L~~lG~~i~~~~-~-~~~I~g~~~~~~~~p~~~~d~~~sgt~~r~l~ 102 (445)
T 2pqc_A 25 ISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG-D-TWIIDGVGNGGLLAPEAPLDFGNAATGCRLTM 102 (445)
T ss_dssp HHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEET-T-EEEEEEECTTCCCCCSSCEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEccCCCCHHHHHHHHHHHHCCCEEEecC-C-EEEEEccCCCCCCCCCcccchhhhhHHHHHHH
Confidence 3456677777677654 5899999999999998876432 1 23333332110 12 111445
Q ss_pred HHHHhCCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCCC
Q psy1330 97 PALAACGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVNC 134 (221)
Q Consensus 97 ~vlAa~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~~ 134 (221)
.+++..+.+|...|...+..+- --.|.|+++ |+++..
T Consensus 103 ~~l~~~~~~v~l~G~~~l~~Rp~~~~l~~L~~~-Ga~i~~ 141 (445)
T 2pqc_A 103 GLVGVYDFDSTFIGDASLTKRPMGRVLNPLREM-GVQVKS 141 (445)
T ss_dssp HHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHT-TCEEEE
T ss_pred HHHhcCCcEEEEECCccCCCCChHHHHHHHHHC-CCEEEe
Confidence 5556667899999997766554 356999999 998864
No 52
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=38.52 E-value=75 Score=21.42 Aligned_cols=54 Identities=19% Similarity=0.032 Sum_probs=37.0
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
.+.+.|++++..+.+|++|..+.+. ++...++.+.-. -+..+.+.+..+++++.
T Consensus 9 ~~~~~lk~~r~~~glsq~~lA~~~g------is~~~is~~e~G--~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIG------VSPQTFNTWCKG--IAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHT------CCHHHHHHHHTT--SCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHhC--CCCCCHHHHHHHHHHHC
Confidence 4667888999999999999887763 566666665543 12235677777776653
No 53
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=36.62 E-value=56 Score=21.12 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHhcCC---CCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 24 KFVNLTVTGT---AEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 24 ~~~~~il~g~---~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
.++.-+.+.+ .+..+.-+||- -||.|.+||..+.
T Consensus 15 ~Av~FL~dp~V~~sp~~~K~~FL~---sKGLt~~EI~~Al 51 (54)
T 3ff5_A 15 TAVKFLQNSRVRQSPLATRRAFLK---KKGLTDEEIDLAF 51 (54)
T ss_dssp HHHHHHHCTTGGGSCHHHHHHHHH---HTTCCHHHHHHHH
T ss_pred HHHHHhCChhhhcCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 3444444443 56788889984 5999999998754
No 54
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=36.30 E-value=84 Score=21.15 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
..+|.+|++++++.+= +|.++-.+ |+..+..+..+.+++..+-
T Consensus 4 ~~~s~~ei~~~~~~~d~~g~i~~~e---F~~~~~~~~~~~~~l~~~F 47 (109)
T 5pal_A 4 KVLKADDINKAISAFKDPGTFDYKR---FFHLVGLKGKTDAQVKEVF 47 (109)
T ss_dssp GTSCHHHHHHHHHHTCSTTCCCHHH---HHHHHTCTTCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCcCcHHH---HHHHHhhccCcHHHHHHHH
Confidence 4578888888887763 56665544 5556666666666654433
No 55
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=35.70 E-value=25 Score=31.92 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=58.5
Q ss_pred HHHH-HHHHH-HHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCC------cchhhHHHHH
Q psy1330 36 DSQI-GAMLM-AMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGD------KVSIPLVPAL 99 (221)
Q Consensus 36 ~~Qi-~AfL~-alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~------niSt~~a~vl 99 (221)
..|. .++|+ +...+|+| ..++....+.|++.+..+.+.... .+.+.|.+ ..+. .+|-++.+++
T Consensus 187 S~q~~s~lLlAa~la~G~t~I~~~~~~p~i~~t~~~L~~~Ga~I~~~~~~-~i~I~g~~~l~~~~~~v~~D~s~A~~~l~ 265 (454)
T 3r38_A 187 SVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTE-VIRIEGVKELTATEHSIIPDRIEAGTFMI 265 (454)
T ss_dssp CHHHHHHHHHHHTTSBSEEEEESCCCCHHHHHHHHHHHHTTCCEECTTSS-EEEEECCSCEECCEEECCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHCCCCEEECCCe-EEEEecCccccccccccCCChhHHHHHHH
Confidence 3443 34444 44556654 467888899999999998765322 56666642 1222 1343333333
Q ss_pred Hh--CCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCC
Q psy1330 100 AA--CGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCS 135 (221)
Q Consensus 100 Aa--~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s 135 (221)
|+ .|-.|...|-. ..+..+..|+|+.+ |++++..
T Consensus 266 aaal~gg~v~i~g~~-~~~~~~i~~~L~~m-Ga~i~~~ 301 (454)
T 3r38_A 266 AAAITGGNVLIEDAV-PEHISSLIAKLEEM-GVQIIEE 301 (454)
T ss_dssp HHHHTTCEEEEESCC-GGGGHHHHHHHHHT-TCEEEEC
T ss_pred HHHHcCCcEEEcCCC-chHHHHHHHHHHHC-CCEEEec
Confidence 33 25577777642 23445678999999 9998754
No 56
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=35.13 E-value=59 Score=28.42 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=38.5
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLT 52 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget 52 (221)
+++++++.+.+|+ .|..|+-.++-.+.-...|+.++++|.-+||-++..
T Consensus 23 Ea~~~~~~il~G~-~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~ 71 (346)
T 4hkm_A 23 EMVDLMRQIMRGE-VSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRR 71 (346)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 4667788888875 677787777777766667888999999999987765
No 57
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=34.96 E-value=1.4e+02 Score=26.89 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=59.3
Q ss_pred hcCCCCHHHHHHHHH-HHHccC-----------CCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCCc------c
Q psy1330 30 VTGTAEDSQIGAMLM-AMFING-----------LTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDK------V 91 (221)
Q Consensus 30 l~g~~~~~Qi~AfL~-alr~kg-----------et~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~n------i 91 (221)
+++..|---+++||+ |...+| .+..|+..+.+.|++.+..+.... ...+-+.|....|.. +
T Consensus 162 i~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~-~~~i~I~g~~l~g~~~~v~~D~ 240 (450)
T 2o0b_A 162 IDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST-PNRWQVRPGPVAARRWDIEPDL 240 (450)
T ss_dssp ECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCS-TTEEEECCCCCCCCCEECCBCH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecC-CcEEEEECCCCcCceEEcCCCH
Confidence 344455555577777 444544 256788899999999998886432 113444442222321 2
Q ss_pred hhhHHHHHHh--CCCcEEeecCCCCCCCCc--HHHHHhcCCCCCCCCC
Q psy1330 92 SIPLVPALAA--CGLKVPMVSGRGLDFSGG--TLDKLESIPGYQVNCS 135 (221)
Q Consensus 92 St~~a~vlAa--~Gv~V~kHG~r~~ts~~G--saDvLe~L~Gi~~~~s 135 (221)
|-++-+++|+ .|-.|..+|-...+-+.+ -.++|+.+ |++++..
T Consensus 241 s~A~~~laaaa~~~g~v~i~~v~~~~~q~~~~i~~~L~~m-Ga~i~~~ 287 (450)
T 2o0b_A 241 TNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQL-NAVVIHA 287 (450)
T ss_dssp HHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEECCCCcccccchHHHHHHHHHc-CCeEEEc
Confidence 3222222222 255677777554333333 46999999 9998754
No 58
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=34.84 E-value=47 Score=24.65 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIAL 59 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~ 59 (221)
+.||.||...+++.+-.. + ....+++..+..-|.-..|+.++
T Consensus 2 ~~lt~~e~~~l~~~~~~~--~-~~~~~~~~l~~~tGlR~~E~~~L 43 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESS--P-CWLRLAMELAVVTGQRVGDLCEM 43 (179)
T ss_dssp CCCCHHHHHHHHHHGGGS--C-HHHHHHHHHHHHHCCCHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcC--c-HHHHHHHHHHHHhCchHHHHhcC
Confidence 579999999999988543 3 34445555556679999999875
No 59
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.50 E-value=2.9e+02 Score=25.50 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cCCC-HHHHHH-HHHHHHh----hCCCCCCCCCCC-
Q psy1330 9 RKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI----NGLT-NEETIA-LTKSMVD----SGETLSWRPEDI- 77 (221)
Q Consensus 9 ~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~----kget-~eEl~g-~~~am~~----~~~~~~~~~~~~- 77 (221)
.++..++.++.+-.+++-..++...+...-.-.|+-.++- ++.+ .+++.. +.+.|.+ ....+++....+
T Consensus 215 ~~~~~~~~ide~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~Isl~i~~Ge 294 (503)
T 2yhs_A 215 ISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPF 294 (503)
T ss_dssp HHHHTTCBCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTTBCCCCCCSCTTE
T ss_pred HHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCCCceeeccCCe
Confidence 3444567799888888888999999998887777776643 2232 233322 2222222 222333332223
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
++=++|.+|.|+. +.-..+-++...|-.|...|..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 7889999999974 1112222333456677766543
No 60
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=32.79 E-value=40 Score=21.26 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+-+.|+.++..+.+|++|..+.+. ++...++.+.-.- +..+.+.+..+++++
T Consensus 14 ~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g~--~~~~~~~l~~l~~~l 65 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSG------LDRSYVGGVERGQ--RNVSLVNILKLATAL 65 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTC--SCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCC--CCCCHHHHHHHHHHh
Confidence 456677777778889888777663 5666666655431 335566666666554
No 61
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=32.57 E-value=74 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61 (221)
Q Consensus 16 ~Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eEl~g~~~ 61 (221)
.+|++|.+++++.+ -+|.++..++..+|..+...+.+.+++..+.+
T Consensus 47 ~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~ 96 (224)
T 1s1e_A 47 NFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFN 96 (224)
T ss_dssp SCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 47777777666654 35667777766666554434455555554433
No 62
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.28 E-value=61 Score=23.48 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 23 AKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 23 ~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
...+...+...+++.|--.|. +++.|.|.+||+...
T Consensus 99 ~~~l~~~l~~~L~~~~r~v~~--~~~~g~s~~EIA~~l 134 (164)
T 3mzy_A 99 IEEFKKFSENNFSKFEKEVLT--YLIRGYSYREIATIL 134 (164)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH--HHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH--HHHcCCCHHHHHHHH
Confidence 334555555689999999888 699999999998754
No 63
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=30.72 E-value=80 Score=23.94 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHHH
Q psy1330 17 LSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEET 56 (221)
Q Consensus 17 Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eEl 56 (221)
+|.+|.++++..+ -+|.++..++..+|..+...+.+.+++
T Consensus 30 ~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~ 73 (207)
T 2d8n_A 30 FSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYA 73 (207)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 4555555544443 134455555444444433323333333
No 64
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=30.42 E-value=78 Score=23.36 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 14 GNELSPGEIAKFVNLTV----TGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 14 g~~Lt~eEa~~~~~~il----~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
.-.+|++|..++++.+- +|.++..++..++..+.....+.+++..+.
T Consensus 12 ~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f 62 (183)
T 1s6c_A 12 QTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLF 62 (183)
T ss_dssp HSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 34566666666555442 355666666666655544445555554443
No 65
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=29.95 E-value=1e+02 Score=26.63 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=50.6
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCCCCCCceeeccC--------------------CCCCCc----chhhHHHHHHhCC
Q psy1330 48 INGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHST--------------------GGVGDK----VSIPLVPALAACG 103 (221)
Q Consensus 48 ~kget~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gt--------------------GGdg~n----iSt~~a~vlAa~G 103 (221)
-+.+|.|||..+++.+.+.+.+..--..+ -|++|+. ||.=.| ..-.+.-+-.+..
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfD-gVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~ 209 (340)
T 3gr7_A 131 PKEMTKADIEETVQAFQNGARRAKEAGFD-VIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWD 209 (340)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCS-EEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcC
Confidence 36689999998888887765443211123 5676653 221002 1222333344446
Q ss_pred CcEEe-ecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCC
Q psy1330 104 LKVPM-VSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGAN 154 (221)
Q Consensus 104 v~V~k-HG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~ 154 (221)
.||.. -+..... .- |...+ +..++.+.|++.|+.|+...
T Consensus 210 ~pv~vRls~~~~~----------~~-g~~~~-~~~~la~~L~~~Gvd~i~vs 249 (340)
T 3gr7_A 210 GPLFVRISASDYH----------PD-GLTAK-DYVPYAKRMKEQGVDLVDVS 249 (340)
T ss_dssp SCEEEEEESCCCS----------TT-SCCGG-GHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEecccccc----------CC-CCCHH-HHHHHHHHHHHcCCCEEEEe
Confidence 66543 2211100 11 44433 56788899999999988653
No 66
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=29.85 E-value=19 Score=32.32 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCc------chhhHHHHHHhC--CCc
Q psy1330 42 MLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDK------VSIPLVPALAAC--GLK 105 (221)
Q Consensus 42 fL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~n------iSt~~a~vlAa~--Gv~ 105 (221)
+|.+...+|+| .+++....+.|++.+..+.+... ..+ +.|.+ ..+.. +|-++-+++|++ |-.
T Consensus 178 llaa~la~g~t~i~~~~~~~~i~~t~~~L~~~Ga~i~~~~~-~~i-I~g~~~l~~~~~~v~~D~s~A~t~l~aaal~~g~ 255 (425)
T 2yvw_A 178 LLYLASVPEESILENIALEPEVMDLIEVLKKMGAHVKVEGR-SAY-VKGSENLKGFTHSVIPDRIEAGTFMVGAVLTDGE 255 (425)
T ss_dssp HHHHTTCSSEEEEESCCCCHHHHHHHHHHHHTTCEEEEETT-EEE-EECCSSCCCCEEECCBCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHhcCCCEEEeCCCCCchHHHHHHHHHHCCCeEEEcCC-EEE-EeCCCccCCccccccCchhHHHHHHHHHHhCCCc
Confidence 33366667765 48888899999999998876431 245 55532 12221 333333444432 456
Q ss_pred EEeecCCCCCCCCcHHHHHhcCCCCCCCC
Q psy1330 106 VPMVSGRGLDFSGGTLDKLESIPGYQVNC 134 (221)
Q Consensus 106 V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~ 134 (221)
|...|.+ ..+...-.|+|+.+ |++++.
T Consensus 256 v~l~g~~-~~~~~~l~~~L~~m-Ga~i~~ 282 (425)
T 2yvw_A 256 ILLENAR-INHLRAVVEKLKLI-GGEVVE 282 (425)
T ss_dssp EEEESCC-GGGCHHHHHHHHHH-TEEEEE
T ss_pred EEEeCCC-chHHHHHHHHHHHC-CCEEEE
Confidence 7777754 33333467999999 988763
No 67
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=29.78 E-value=75 Score=21.31 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 18 SPGEIAKFVNLTVTGT--AEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 18 t~eEa~~~~~~il~g~--~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+.+|.+++|+.+.+|+ ++..++-. ..|.+|+..+++.+
T Consensus 8 ~~eel~eAFr~f~dg~G~It~~eLr~--------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 8 TAEQVIASFRILASDKPYILAEELRR--------ELPPDQAQYCIKRM 47 (75)
T ss_dssp THHHHHHHHHHHTTSCSSBCHHHHHH--------HSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCcCHHHHHh--------cCCHHHHHHHHHhc
Confidence 7899999999996544 67777766 38999988887764
No 68
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.68 E-value=49 Score=21.60 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=32.7
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
.+.+.|++++..+.+|++|..+.+. ++...++-+.-.- +..+.+.+..+++++
T Consensus 12 ~l~~~l~~~r~~~gltq~~lA~~~g------vs~~~is~~e~g~--~~~~~~~~~~ia~~l 64 (80)
T 3kz3_A 12 RLKAIWEKKKNELGLSYESVADKMG------MGQSAVAALFNGI--NALNAYNAALLAKIL 64 (80)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTT------SCHHHHHHHHTTS--SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHcCC--CCCCHHHHHHHHHHh
Confidence 4667778877778888888776653 4555555544331 223556666666555
No 69
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=29.59 E-value=1.2e+02 Score=19.70 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1330 17 LSPGEIAKFVNLTVTGTAEDSQIGAMLMAM 46 (221)
Q Consensus 17 Lt~eEa~~~~~~il~g~~~~~Qi~AfL~al 46 (221)
++.+|.+.++..+ .-..++.++-.++-.+
T Consensus 26 i~~~el~~~l~~~-g~~~~~~~~~~l~~~~ 54 (92)
T 2kn2_A 26 ISASELRHVMINL-GEKLTDEEVEQMIKEA 54 (92)
T ss_dssp ECHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Confidence 5555555555443 1234444444444443
No 70
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=29.47 E-value=24 Score=21.62 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy1330 16 ELSPGEIAKFVNLTVTG 32 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g 32 (221)
-||.+||+|+=..+++|
T Consensus 2 gLT~~EA~EfH~~~~~~ 18 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDG 18 (41)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 48999999998888776
No 71
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=29.20 E-value=62 Score=26.80 Aligned_cols=154 Identities=10% Similarity=0.047 Sum_probs=84.2
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCC-CCCCCCceeeccCCCCCC---------c--ch-hhHHHHHHhCCC-----cEEee
Q psy1330 48 INGLTNEETIALTKSMVDSGETLS-WRPEDIVVDKHSTGGVGD---------K--VS-IPLVPALAACGL-----KVPMV 109 (221)
Q Consensus 48 ~kget~eEl~g~~~am~~~~~~~~-~~~~~~~vD~~gtGGdg~---------n--iS-t~~a~vlAa~Gv-----~V~kH 109 (221)
..|.|.|++..++++++++..++- .+.. .+-..-|-|+- | |- -.=...+.+.|+ .+.-.
T Consensus 40 s~gvt~~~~~~~v~~ik~~~~Pvvlfp~~---~~~v~~gaD~~l~pslln~~~~~~i~g~~~~a~~~~g~~~~~~e~i~~ 116 (228)
T 3vzx_A 40 SDGVTEDNVLRMMSKVRRFLVPCVLEVSA---IEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAE 116 (228)
T ss_dssp CSCCCHHHHHHHHHHHTTSSSCEEEECSC---GGGCCSCCSEEEEEEETTBSSGGGTTHHHHHHHHHHHHHHHHSCEEEE
T ss_pred cCCCCHHHHHHHHHHhhccCCCEEEeCCC---HHHccccCCEEEEeeecCCCCcchhhhHHHHHHHHcCCCCcccceeee
Confidence 567889999999999998533321 1111 12222234443 2 21 111111355674 44444
Q ss_pred cCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhh-----CceeecCCCcCChhhhhhHHHhhhh-C-------CCCC
Q psy1330 110 SGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEV-----GCFIVGANKQLSPGDQILYRVRDVT-A-------TVDN 176 (221)
Q Consensus 110 G~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~-----g~~fl~a~~~~~P~~~~l~~lR~~l-g-------Ti~~ 176 (221)
|---+.+.+-++.+-++ +...+++++....... ++.|+..+ .-......+..+|+.+ . =|.+
T Consensus 117 gYivv~p~s~~~~~~~a----~~~~~~e~~~~~a~~a~~~g~~~VYld~s-G~~~~~~~i~~i~~~~~~~Pv~vGGGI~t 191 (228)
T 3vzx_A 117 GYCIANPDCKAAALTEA----DADLNMDDIVAYARVSELLQLPIFYLEYS-GVLGDIEAVKKTKAVLETSTLFYGGGIKD 191 (228)
T ss_dssp EEEECCSSSHHHHHTTB----CCCCCHHHHHHHHHHHHHTTCSEEEEECT-TSCCCHHHHHHHHHHCSSSEEEEESSCCS
T ss_pred EEEEECCCCcceeeecc----cCCCCHHHHHHHHHHHHHcCCCEEEecCC-CCcCCHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 43333332223344333 3334678776665543 67777554 2222455678888876 3 2444
Q ss_pred chhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 177 LSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 177 ~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
.-+. +++..|+|.+|++ +|++++++..+++.+.
T Consensus 192 ~e~a------~~~~~gAD~VVVG-----Sa~v~~p~~~~~~v~a 224 (228)
T 3vzx_A 192 AETA------KQYAEHADVIVVG-----NAVYEDFDRALKTVAA 224 (228)
T ss_dssp HHHH------HHHHTTCSEEEEC-----THHHHCHHHHHHHHHH
T ss_pred HHHH------HHHHhCCCEEEEC-----hHHhcCHHHHHHHHHH
Confidence 4333 2334699999984 5778899998888753
No 72
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=28.93 E-value=69 Score=25.08 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMA 45 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~a 45 (221)
++|.||..+.+-.+...-++|.|||-.|==
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 579999999999999999999999987743
No 73
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=28.84 E-value=51 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHH
Q psy1330 14 GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIAL 59 (221)
Q Consensus 14 g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~ 59 (221)
.+.||.+|...+++.+-+... .+...++..+..-|.-..|+.++
T Consensus 4 ~~~lt~~e~~~l~~~~~~~~~--~~~~~~~~l~~~tG~R~~E~~~L 47 (170)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRN--PDLGLIVRICLATGARWSEAETL 47 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHCCCHHHHHTC
T ss_pred cccCCHHHHHHHHHHHhcccc--hhHHHHHHHHHHhCCcHHHHHhC
Confidence 467999999999999865433 34555666677889999999874
No 74
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=28.67 E-value=1.2e+02 Score=26.47 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCCC
Q psy1330 24 KFVNLTVTGT-AEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGET 69 (221)
Q Consensus 24 ~~~~~il~g~-~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~~ 69 (221)
++++.+.+|+ .|..|+..++-.+--...|+.++.+|.-|++-.+..
T Consensus 5 ~~i~k~~~g~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget 51 (345)
T 1o17_A 5 EILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGES 51 (345)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Confidence 3444444433 444443333333222223555555555555555443
No 75
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=28.36 E-value=72 Score=28.99 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC----c-c-------hh-hHHHHHHhCCCcEEeecCCCCCCCC-
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD----K-V-------SI-PLVPALAACGLKVPMVSGRGLDFSG- 118 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~----n-i-------St-~~a~vlAa~Gv~V~kHG~r~~ts~~- 118 (221)
.+++..+.+++++.+..+.+.. . .+-+.|.|..+. . + +. ++..++|..+.++...|+..+..+-
T Consensus 50 ~~Dv~~~~~~L~~lG~~i~~~~-~-~~~i~g~~~~~~~~~~~~i~~g~SGt~mRll~g~la~~~~~~~l~G~~~l~~RPi 127 (455)
T 3rmt_A 50 GADCLSTISCFQKLGVSIEQAE-E-RVTVKGKGWDGLREPSDILDVGNSGTTTRLILGILSTLPFHSVIIGDESIGKRPM 127 (455)
T ss_dssp SHHHHHHHHHHHTTTCEEEEET-T-EEEEECCCGGGCCCCSSCEECTTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCC
T ss_pred cHHHHHHHHHHHHcCCeEEecC-C-EEEEeCCCCCCcCCCcceeecccccccHHHHHHHHHcCCcEEEEeCCcccccCCH
Confidence 6899999999999998887643 2 344444431111 0 1 22 3455677777899999998876554
Q ss_pred c-HHHHHhcCCCCCCCC
Q psy1330 119 G-TLDKLESIPGYQVNC 134 (221)
Q Consensus 119 G-saDvLe~L~Gi~~~~ 134 (221)
+ -.|.|++| |++++.
T Consensus 128 ~~~~~~L~~l-Ga~i~~ 143 (455)
T 3rmt_A 128 KRVTEPLKSM-GAQIDG 143 (455)
T ss_dssp HHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHC-CCEEEE
Confidence 3 46899999 998864
No 76
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=28.16 E-value=66 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLM 44 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~ 44 (221)
++|.||..+.+-.+...-+++.|||-.|-
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 58999999999999999999999998873
No 77
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.06 E-value=3.4e+02 Score=24.51 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=68.1
Q ss_pred cHHHHHHHHhCCCCCCHHHHH----HHHHHHhcCCCCHHHHHHHHHHHHcc--------CCCH-HHH-HHHHHHHHhhCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIA----KFVNLTVTGTAEDSQIGAMLMAMFIN--------GLTN-EET-IALTKSMVDSGE 68 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~----~~~~~il~g~~~~~Qi~AfL~alr~k--------get~-eEl-~g~~~am~~~~~ 68 (221)
.+...++++.....||.+... ++-..++..++...-.-.|.-.++-+ +.++ +++ ..+.+.+.+...
T Consensus 9 ~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L~ 88 (443)
T 3dm5_A 9 ALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLG 88 (443)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhc
Confidence 356778888888899998765 45556778888887666666554322 2333 332 234444544322
Q ss_pred C----CCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 69 T----LSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 69 ~----~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
. ++....+.++=++|.+|.|+. ++.-.|..++..|.+|..-...
T Consensus 89 ~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 89 TEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 1 111111337888999999974 4444556677889999887655
No 78
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.58 E-value=75 Score=20.75 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
+.+.|+.++..+.+|++|..+.+. ++...++.+.-. -+..+.+.+..+++++.
T Consensus 13 ~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g--~~~~~~~~l~~i~~~l~ 65 (88)
T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIG------IKQATISNFENN--PDNTTLTTFFKILQSLE 65 (88)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHHC--GGGCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcC--CCCCCHHHHHHHHHHhC
Confidence 556777777778899988877763 677788777765 23467788777777653
No 79
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=27.52 E-value=2.7e+02 Score=23.18 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHc--c------CCCH-HHHHH-HHHHHHhh-C-
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVN----LTVTGTAEDSQIGAMLMAMFI--N------GLTN-EETIA-LTKSMVDS-G- 67 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~----~il~g~~~~~Qi~AfL~alr~--k------get~-eEl~g-~~~am~~~-~- 67 (221)
+.+.++++.....+++++..++++ .++.-+.....+-.+.--++. + +.++ +|+.. ..+.+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (295)
T 1ls1_A 9 LQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGG 88 (295)
T ss_dssp HHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHCC
Confidence 455666666678899876655554 556677777666666544432 1 2344 55443 22233222 1
Q ss_pred --CCCCCCCCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 68 --ETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 68 --~~~~~~~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
..+++. ...++=++|.+|.|+. +....|-.++..|.+|...+..
T Consensus 89 ~~~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 89 EARLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SCCCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 122333 2226667898999975 4555556667789999988765
No 80
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=27.44 E-value=35 Score=21.44 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVN 27 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~ 27 (221)
..+++-.+..+||++|+.+++.
T Consensus 22 ~~mR~AV~~G~iTQ~E~D~I~~ 43 (51)
T 2xf7_A 22 ELLRVAVNAGDLTQEEADKIMS 43 (51)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHHHHHhcCcccHHHHHHHHh
Confidence 5667777778899999988764
No 81
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=26.86 E-value=1.8e+02 Score=20.87 Aligned_cols=47 Identities=4% Similarity=0.051 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKS 62 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~a 62 (221)
..+|.+|...++..+-....++.++-.++-.. -...+.+|...+...
T Consensus 40 G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-dg~i~~~eF~~~~~~ 86 (166)
T 2mys_B 40 GIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-SGPINFTVFLTMFGE 86 (166)
T ss_pred CcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-CCCcCHHHHHHHHHH
Confidence 35777777777776522145666665554432 222466666655543
No 82
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=26.49 E-value=89 Score=25.03 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHccCCCHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLT----VTGTAEDSQIGAMLMAMFINGLTNEETIAL 59 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~alr~kget~eEl~g~ 59 (221)
-.+|++|+..+++.+ -+|.++..++..+|..+...+.+.+++..+
T Consensus 86 ~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~ 134 (256)
T 2jul_A 86 TKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFL 134 (256)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHH
Confidence 457888877777766 356677777777776654444555554443
No 83
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=26.40 E-value=1.5e+02 Score=24.48 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHH
Q psy1330 20 GEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIA 58 (221)
Q Consensus 20 eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g 58 (221)
.|+.++++.+ +.|..++..+...+. .|++++|.+.
T Consensus 108 P~~~~~L~~~---~lt~~~~~~l~~~v~-~~~~~~~vA~ 142 (268)
T 2b4l_A 108 PNAAKLLSQF---KWTQDEMGEIMIKVE-EGEKPAKVAA 142 (268)
T ss_dssp HHHHHHHHTC---CCCHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHH-cCCCHHHHHH
Confidence 3567777777 788889998888888 7888888654
No 84
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=26.40 E-value=1e+02 Score=20.37 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+.+++++++..+.+|++|..+.+. ++...++-+.-.- +..+.+.+..+++++
T Consensus 18 l~~~l~~~R~~~glsq~~lA~~~g------is~~~is~~e~g~--~~~~~~~l~~ia~~l 69 (92)
T 1lmb_3 18 LKAIYEKKKNELGLSQESVADKMG------MGQSGVGALFNGI--NALNAYNAALLAKIL 69 (92)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTS--SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCC--CCCCHHHHHHHHHHH
Confidence 556666666777888888877653 5666666555431 235666666666655
No 85
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=26.32 E-value=1.8e+02 Score=25.44 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=36.0
Q ss_pred chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCC----------CCCHHHHHHHHHhhCc
Q psy1330 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQV----------NCSTADLKAKLSEVGC 148 (221)
Q Consensus 91 iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~----------~~s~~~~~~~l~~~g~ 148 (221)
+.-..+-+....|.||..|-.++-... -..++|+.. |++. ..+++++.+++++.|+
T Consensus 170 ~f~aq~~~A~e~glPViiH~r~gr~a~-d~l~iL~e~-g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~ 235 (363)
T 3ovg_A 170 ALEVAARTSILTGCPILVHTQLGTMAL-EVAKHLIGF-GANPDKIQISHLNKNPDKYYYEKVIKETGV 235 (363)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETTCSHH-HHHHHHHHH-TCCGGGEEEECGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCCHH-HHHHHHHhc-CCCCCcEEEEcCCCCCCHHHHHHHHHHCCc
Confidence 666666677778999999976531111 244677665 5541 2467888888855664
No 86
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.32 E-value=55 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
++|.||..+.+-.+...-++|.|||..|
T Consensus 27 ~~~~eev~~~i~klakkG~~pSqIG~~L 54 (158)
T 3j20_Q 27 EYTVEEIENLVVKLRKEGYSTAMIGTIL 54 (158)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhHHH
Confidence 4788999999888888889999998876
No 87
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=26.29 E-value=1.6e+02 Score=20.81 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKS 62 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~a 62 (221)
..+|.+|.+.++..+ .-..++.++-.++-- .-...+.+|...+...
T Consensus 33 G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~-~~g~i~~~eF~~~~~~ 78 (156)
T 1wdc_B 33 GFVSKEDIKAISEQL-GRAPDDKELTAMLKE-APGPLNFTMFLSIFSD 78 (156)
T ss_dssp SSCCHHHHHHHHHHH-SSCCCHHHHHHHHTT-SSSCCCHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHh-CCCCCHHHHHHHHHh-CCCcCcHHHHHHHHHH
Confidence 357788887777775 334566666555431 1112466776655543
No 88
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=26.13 E-value=1.4e+02 Score=19.64 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=40.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
.+-+.|+.++..+.||++|..+.+. ++...++-+.-.- +..+.+.+..+++++.
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~g------is~~~is~~e~g~--~~p~~~~l~~la~~l~ 66 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKIN------EKPQVIADYESGR--AIPNNQVLGKIERAIG 66 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHT------SCHHHHHHHHHTC--SCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCC--CCCCHHHHHHHHHHHC
Confidence 4677888999999999999888763 6777777776542 3367888888887764
No 89
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.10 E-value=89 Score=20.09 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=31.6
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
.+.+.|+.++..+.+|++|..+.+. ++...++.+.-.- +..+.+.+..+++++
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~--~~~~~~~l~~~~~~l 62 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLG------LSQSDISKIESFE--RRLDALELFELLEVV 62 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTS--SCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCC--CCCCHHHHHHHHHHH
Confidence 4567788888888999999887763 4444444444321 123444444444444
No 90
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=25.70 E-value=1.5e+02 Score=20.62 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=32.0
Q ss_pred hcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 30 VTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 30 l~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
.++++..+|.-||--.+++-..+.|.--||++.++.-
T Consensus 14 vdNkfnk~qqnAfyEIl~lPNLneeQrnafiqSLkDD 50 (88)
T 2lr2_A 14 VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDD 50 (88)
T ss_dssp CCCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHT
T ss_pred hcchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Confidence 4677888999999999999999999999999998864
No 91
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=25.45 E-value=1e+02 Score=22.22 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIA 58 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g 58 (221)
+.||.+|...++..+ .+++ ++.-..-..+..|.|.+||+.
T Consensus 3 ~rmT~~eFe~~~~~l---~~~~-~~~~~A~lyYv~g~tQ~eIA~ 42 (101)
T 2w7n_A 3 KRLTESQFQEAIQGL---EVGQ-QTIEIARGVLVDGKPQATFAT 42 (101)
T ss_dssp CCCCHHHHHHHHTTC---CCCH-HHHHHHHHHHTTCCCHHHHHH
T ss_pred ccCCHHHHHHHHccC---ChHH-HHHHHHHHHHHcCCCHHHHHH
Confidence 568999988888666 5666 444445556889999988875
No 92
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.19 E-value=1.5e+02 Score=20.13 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGE 68 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~~~ 68 (221)
...++..+....-||.+|...+-. ...+..|.-.||-.+..|| +.-...|.+++++...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~----~~t~~~kar~Lld~l~~kG--~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRN----EPTQQQRAAMLIKMILKKD--NDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHT----SSSHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc----CCChHHHHHHHHHHHHHcC--HHHHHHHHHHHHHcCH
Confidence 345566666667899888776655 3556678888888888777 4556778899987653
No 93
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.06 E-value=1.6e+02 Score=19.84 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
+..+...+.+...|+..+-.-+.-.+..-.-.+.++..-.-.-+-.|.|.||+.....-.
T Consensus 19 ~~~l~~~~~~~~~L~~~~reLi~l~vs~~ngc~~c~~~H~~~a~~~G~t~~ei~~~~~~~ 78 (96)
T 3bey_A 19 FKNFREAVRSEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGITEGELAEAAAVA 78 (96)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344555555556687766555554444333478899888888889999999998876544
No 94
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=24.93 E-value=1.2e+02 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC---------------------CHHHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGL---------------------TNEETIALTKSMV 64 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kge---------------------t~eEl~g~~~am~ 64 (221)
.+||.||+.+-++.++.. .+ -..+++++++.-.. -.||+.|+.-++.
T Consensus 41 p~l~~e~~~e~v~~vL~K--re-V~~~il~GI~Ld~~ae~~~l~epl~~~i~~D~~~iviDEi~G~~Ia~~ 108 (178)
T 1y9i_A 41 PGLELDICRQNVEHVLRK--RE-VQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSIVNV 108 (178)
T ss_dssp TTCCHHHHHHHHHHHHTC--HH-HHHHHHHHHHHHHHHHTTCSCTTHHHHHHTTCTTCCHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCC--HH-HHHHHHHHHHHHHHHHhccCCchhHHHhccCCCceeeehHHHHHHHHH
Confidence 459999999999999987 34 44456666554322 2689999998886
No 95
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=24.88 E-value=38 Score=28.33 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=84.1
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCC-CCCCCCceeeccCCCCCC---------c--chh-hHHHHHHhCCC-----cEEee
Q psy1330 48 INGLTNEETIALTKSMVDSGETLS-WRPEDIVVDKHSTGGVGD---------K--VSI-PLVPALAACGL-----KVPMV 109 (221)
Q Consensus 48 ~kget~eEl~g~~~am~~~~~~~~-~~~~~~~vD~~gtGGdg~---------n--iSt-~~a~vlAa~Gv-----~V~kH 109 (221)
..|.|.+.+..+++.++++..++- .+. . .+-..-|-|+- | |.. .=...+.+.|+ .+.-.
T Consensus 45 s~gvt~~~~~~~v~~ik~~~~Piil~p~-~--~~~~~~gaD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~ 121 (235)
T 3w01_A 45 TDDVTEDNVIHLMSKIRRYPLPLVLEIS-N--IESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFE 121 (235)
T ss_dssp SSCCCHHHHHHHHHHHTTSCSCEEEECC-C--STTCCTTCSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEE
T ss_pred cCCcCHHHHHHHHHHhcCcCCCEEEecC-C--HHHhhcCCCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeee
Confidence 567899999999999998433321 111 1 11112233433 2 322 00112566787 55554
Q ss_pred cCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHH------hhCceeecCCCcCChhhhhhHHHhhhh-C-------CCC
Q psy1330 110 SGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLS------EVGCFIVGANKQLSPGDQILYRVRDVT-A-------TVD 175 (221)
Q Consensus 110 G~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~------~~g~~fl~a~~~~~P~~~~l~~lR~~l-g-------Ti~ 175 (221)
|---+.+.+-.+.+-++- ...+++++...-. ..++.|+-.+ .-......+..+|+.+ . =|.
T Consensus 122 gYivv~p~s~v~~v~~a~----~~~~~e~iaa~A~~a~~~~g~~~vY~e~s-G~~g~~~~v~~ir~~~~~~pv~vGfGI~ 196 (235)
T 3w01_A 122 GYVVCNADSKVAKHTKAN----TDLTTEDLEAYAQMVNHMYRLPVMYIEYS-GIYGDVSKVQAVSEHLTETQLFYGGGIS 196 (235)
T ss_dssp EEEECCSSSHHHHHTTBC----CCCCHHHHHHHHHHHHHTTCCSEEEEECT-TSCCCHHHHHHHHTTCSSSEEEEESCCC
T ss_pred eEEEECCCCChhhcccCC----cCCCHHHHHHHHHHHHHHcCCCEEEEecC-CCcCCHHHHHHHHHhcCCCCEEEECCcC
Confidence 433333322223443333 3346777776633 3466677444 3344456678888866 2 244
Q ss_pred CchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 176 NLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 176 ~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
+.-+. +++..|||.+|++ .|++++++.++++++
T Consensus 197 ~~e~a------~~~~~gAD~VVVG-----Sai~~~~~~~~e~v~ 229 (235)
T 3w01_A 197 SEQQA------TEMAAIADTIIVG-----DIIYKDIKKALKTVK 229 (235)
T ss_dssp SHHHH------HHHHTTSSEEEEC-----THHHHCHHHHHHTTC
T ss_pred CHHHH------HHHHcCCCEEEEC-----CceecCHHHHHHHHH
Confidence 44332 3455699999985 567888888887754
No 96
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=24.88 E-value=1.3e+02 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTN 53 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~ 53 (221)
+..+++.+.+|+ .|..|+-.++-.+.-...|+.++++|.-+||-++...
T Consensus 45 a~~~~~~il~G~-~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~~~~~ 93 (374)
T 1vqu_A 45 AAELMQGWLSEA-VPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMG 93 (374)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc
Confidence 456666666654 4666666666665554557888888888888877764
No 97
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=24.85 E-value=92 Score=20.29 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHh
Q psy1330 36 DSQIGAMLMAMFINGLTNEETIALTKSMVD 65 (221)
Q Consensus 36 ~~Qi~AfL~alr~kget~eEl~g~~~am~~ 65 (221)
++|.-||---+.+.+.|.+.--||++.+.+
T Consensus 4 ~~qQ~AFYeil~lpnLtEeqRn~yI~slkd 33 (57)
T 3qwo_C 4 DEKKLASNEIANLPNLNEEQRSAFLSSIND 33 (57)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcchhhccchHhhhcc
Confidence 445555555555555555555555555543
No 98
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=24.81 E-value=1.8e+02 Score=20.39 Aligned_cols=48 Identities=8% Similarity=-0.016 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC---CCHHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING---LTNEETIALTKSM 63 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg---et~eEl~g~~~am 63 (221)
..+|.+|...+++.+ .-..++.++-.++-.+-..+ .+.+|...+....
T Consensus 38 G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 88 (161)
T 3fwb_A 38 GFLDYHELKVAMKAL-GFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88 (161)
T ss_dssp SEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHH
Confidence 357777777777764 33566666666665554433 3566666555543
No 99
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.73 E-value=61 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.0
Q ss_pred CccHHHHHHHHhCCCCCCHHHHHHHHH
Q psy1330 1 MSGIIELLRKKRSGNELSPGEIAKFVN 27 (221)
Q Consensus 1 m~~~~~~i~k~~~g~~Lt~eEa~~~~~ 27 (221)
|. ++++++|+.+ ..||.+|+..+++
T Consensus 1 m~-~~~i~~k~~~-~~l~~~e~~~ll~ 25 (348)
T 3iix_A 1 MT-GREILEKLER-REFTREVLKEALS 25 (348)
T ss_dssp CC-HHHHHHHHHT-TCCCHHHHHHHHH
T ss_pred CC-HHHHHHHHHh-CCCCHHHHHHHHc
Confidence 44 8899999999 9999999887653
No 100
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=24.64 E-value=21 Score=29.15 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=14.6
Q ss_pred hhHHHHhhhhhhhcCCCeEEEeeec
Q psy1330 178 SLCSASILSKKVAEGTKYLVIDVKV 202 (221)
Q Consensus 178 ~l~~asilskk~~~g~~~~v~dv~~ 202 (221)
|.+...+.......+...+|+|+|+
T Consensus 97 P~I~~~~~~~~~~~~~~~vv~d~pL 121 (210)
T 4i1u_A 97 PLIRAETEREARDAQGPYVIFVVPL 121 (210)
T ss_dssp HHHHHHHHHHHHTCCSSSEEEECTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEec
Confidence 4444444333333467788999985
No 101
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=24.42 E-value=2.3e+02 Score=22.38 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=38.0
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-----cC----------------CCHHHHHHHH
Q psy1330 4 IIELLRKKRSG--NELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI-----NG----------------LTNEETIALT 60 (221)
Q Consensus 4 ~~~~i~k~~~g--~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~-----kg----------------et~eEl~g~~ 60 (221)
+.++.-.+... .+||.||+.+-++.++.. .+.|. +++++++. ++ --.||+.|+.
T Consensus 30 ia~~~~~Lq~~y~p~l~~e~~~e~v~~vL~K--reV~~-~il~GI~Ld~~ae~~~l~~pl~~~~~~D~~~iviDEv~G~~ 106 (168)
T 1rfz_A 30 IAELVYYLQSKYHPDLTMEECIENVNRVISK--REVQN-AILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALS 106 (168)
T ss_dssp HHHHHHHHHTTTCSSCCHHHHHHHHHHHHTC--HHHHH-HHHHHHHHHHHTTTTCSCTTHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHhcCccCCCcCHHHHHHHHHHHHCC--HHHHH-HHHHHHHHHHHHhccccCchhHHHhccCCCceeeehHHHHH
Confidence 33444444333 469999999999999987 45554 55666654 11 1268999998
Q ss_pred HHH
Q psy1330 61 KSM 63 (221)
Q Consensus 61 ~am 63 (221)
-++
T Consensus 107 Ia~ 109 (168)
T 1rfz_A 107 IVN 109 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 102
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=24.23 E-value=79 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHH----hcCCCCHHHHHHHHHHH
Q psy1330 17 LSPGEIAKFVNLT----VTGTAEDSQIGAMLMAM 46 (221)
Q Consensus 17 Lt~eEa~~~~~~i----l~g~~~~~Qi~AfL~al 46 (221)
+|++|.++++..+ -+|.++..++..++..+
T Consensus 22 ~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 2l2e_A 22 FDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQF 55 (190)
T ss_dssp SCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 4555555555544 24556666666655554
No 103
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=24.17 E-value=2.1e+02 Score=20.83 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHHHHhC------CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 4 IIELLRKKRS------GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 4 ~~~~i~k~~~------g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
|.+-|+.+.. ++++|++|..+.++. .-..++...++.+--.-| +-.|.+-+..+++++
T Consensus 6 ~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~-~G~~iS~s~is~iE~G~r-~~Ps~~~l~~iA~~f 69 (123)
T 3qwg_A 6 FAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGNR-TNPSGATMAALANFF 69 (123)
T ss_dssp HHHHHHHHHHHSSCTTTCSCCHHHHHHHHHH-TTCCCCHHHHHHHHHTSS-CCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHcCCC-CCCCHHHHHHHHHHh
Confidence 4444555555 678999999999982 222478777776655432 346777777777664
No 104
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=24.16 E-value=2.1e+02 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q psy1330 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGL 51 (221)
Q Consensus 6 ~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kge 51 (221)
.+++.+.+| ..|..|+-.++-.+.-...|+.++++|..+||-.+.
T Consensus 26 ~~~~~i~~G-~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~ 70 (436)
T 3h5q_A 26 FFIGGYVKG-DIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGD 70 (436)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333333333 234444444433333222444455555555554444
No 105
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=24.10 E-value=20 Score=21.57 Aligned_cols=34 Identities=24% Similarity=0.138 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHh
Q psy1330 32 GTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65 (221)
Q Consensus 32 g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~ 65 (221)
.+...+|.-||--.+++.+.|.|+--++++.+++
T Consensus 4 ~~~~~~QQnaFYevLh~~nLtEeQrn~yI~slkd 37 (38)
T 1zda_A 4 QSFNMQQQRRFYEALHDPNLNEEQRNAKIKSIRD 37 (38)
T ss_dssp TTTTTTSSHHHHHHHSCSSSCTTHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHHcCCCCCHHHHHhHHHHhhc
Confidence 3455678889999999999999999999887753
No 106
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=24.08 E-value=35 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHhcC
Q psy1330 15 NELSPGEIAKFVNLTVTG 32 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g 32 (221)
.-||.+||+|+=..+++|
T Consensus 6 tGLT~~EA~EfH~~~~~~ 23 (45)
T 1lgh_B 6 SGLTEEEAIAVHDQFKTT 23 (45)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 359999999999888776
No 107
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=23.95 E-value=96 Score=27.48 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=61.1
Q ss_pred HHHhCCCcEEeecCCCCCCCCcHH----HHHhcC-CCC------CCCCCHHHHHHH---HHhhCceeecCCCcCCh-hhh
Q psy1330 98 ALAACGLKVPMVSGRGLDFSGGTL----DKLESI-PGY------QVNCSTADLKAK---LSEVGCFIVGANKQLSP-GDQ 162 (221)
Q Consensus 98 vlAa~Gv~V~kHG~r~~ts~~Gsa----DvLe~L-~Gi------~~~~s~~~~~~~---l~~~g~~fl~a~~~~~P-~~~ 162 (221)
-..+.|++..|.....- .-.-. -+-+++ |++ +-..+++++.+. |++.|+.|+=+| +.| .+.
T Consensus 198 ~~~~~G~~~~K~k~g~~--~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~iEqP--~~~~d~~ 273 (412)
T 4h1z_A 198 AWQAKGFSSFKFASPVA--DDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGLWFAEAP--VRTEDID 273 (412)
T ss_dssp HHHHTTCCEEEEEGGGC--TTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCEEEEECC--SCTTCHH
T ss_pred HHHhcCcceeccccccc--hhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhcccccceecCC--CCccchH
Confidence 34467999999753211 11111 233444 222 223477776554 567899999777 433 456
Q ss_pred hhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHH
Q psy1330 163 ILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219 (221)
Q Consensus 163 ~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~ 219 (221)
.+..||+.++ .+.+...... ++.+ -..|.+.+|++.| | +.+++++|.
T Consensus 274 ~~~~l~~~~~iPIa~dE~~~~~~~~~~-~i~~---~a~div~~d~~~G-G-----it~~~kia~ 327 (412)
T 4h1z_A 274 GLARVAASVSTAIAVGEEWRTVHDMVP-RVAR---RALAIVQPEMGHK-G-----ITQFMRIGA 327 (412)
T ss_dssp HHHHHHHHCSSEEEECTTCCSHHHHHH-HHHT---TCCSEECCCHHHH-H-----HHHHHHHHH
T ss_pred HHHHHHhhcCCccccCCcccchHhHHH-HHHc---CCCCEEEecCCCC-C-----hHHHHHHHH
Confidence 7788998876 4444433322 2222 2468888888765 3 566666654
No 108
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=23.95 E-value=1.3e+02 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=38.9
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCC
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLT 52 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget 52 (221)
++..+++.+.+|+ .|..|+-.++-.+.-...|+.++++|.-+||-++..
T Consensus 43 Ea~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~ 91 (377)
T 3r88_A 43 QAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHP 91 (377)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCc
Confidence 4677888888875 678888777777776667899999999999988764
No 109
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.58 E-value=1.1e+02 Score=18.59 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAML 43 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL 43 (221)
+-+.|++++..+.+|++|..+.+. ++...++.+.
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e 35 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVG------TTQQSIEQLE 35 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHH
Confidence 456678888888899999877652 4444444443
No 110
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=23.21 E-value=1.9e+02 Score=23.87 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEE----------
Q psy1330 136 TADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVI---------- 198 (221)
Q Consensus 136 ~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~---------- 198 (221)
..++.+.+-+-|+..+=.+-+=..++..+..+|++++ |+.+.-+.-. -+.+|++.+|.
T Consensus 48 a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~-----Ai~AGA~fIvsP~~~~~vi~~ 122 (232)
T 4e38_A 48 IIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALA-----AKEAGATFVVSPGFNPNTVRA 122 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHH-----HHHHTCSEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHH-----HHHcCCCEEEeCCCCHHHHHH
Confidence 3444555556677766433122345666777887653 7665433322 34689999986
Q ss_pred ----eeecCCCCCCCCHHHHHH
Q psy1330 199 ----DVKVGEASFFKTYEKAKE 216 (221)
Q Consensus 199 ----dv~~g~~a~~~~~~~a~~ 216 (221)
++++-+|+. |++|+.+
T Consensus 123 ~~~~gi~~ipGv~--TptEi~~ 142 (232)
T 4e38_A 123 CQEIGIDIVPGVN--NPSTVEA 142 (232)
T ss_dssp HHHHTCEEECEEC--SHHHHHH
T ss_pred HHHcCCCEEcCCC--CHHHHHH
Confidence 566666655 6666654
No 111
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.08 E-value=1.7e+02 Score=19.45 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 14 GNELSPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 14 g~~Lt~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
|..+|.+|+.++++.+= +|.++-.+ |+..+..+..+.+++..+.+.+
T Consensus 4 ~~~~~~~ei~~~~~~~D~~g~i~~~e---F~~~~~~~~~~~~~l~~~F~~~ 51 (109)
T 3fs7_A 4 TDILSAKDIESALSSCQAADSFNYKS---FFSTVGLSSKTPDQIKKVFGIL 51 (109)
T ss_dssp GGTSCHHHHHHHHHHTCSTTCCCHHH---HHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHhcCCCCcCcHHH---HHHHHhcCCCcHHHHHHHHHHH
Confidence 45688899988888773 55555544 5656666666666665544433
No 112
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=23.03 E-value=82 Score=28.37 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHccCCC-------HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCC----CC------cchh---hHH
Q psy1330 37 SQIGAMLMAMFINGLT-------NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGV----GD------KVSI---PLV 96 (221)
Q Consensus 37 ~Qi~AfL~alr~kget-------~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGd----g~------niSt---~~a 96 (221)
...-+++.+.-.+|+| .+++..+.++|++.+..+.+......+-+.|.||. .. |..+ +..
T Consensus 48 ~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g~~~~~~~~~~~~l~~g~sgt~~R~l~ 127 (450)
T 3nvs_A 48 VSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLA 127 (450)
T ss_dssp HHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCSSCCBCSSCEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeCCCCCcCCCCCceEEccCccchHHHHH
Confidence 3444555555566743 67889999999999988876532112455565531 10 1112 234
Q ss_pred HHHHhCCCcEEeecCCCCCCCC--cHHHHHhcCCCCCCCC
Q psy1330 97 PALAACGLKVPMVSGRGLDFSG--GTLDKLESIPGYQVNC 134 (221)
Q Consensus 97 ~vlAa~Gv~V~kHG~r~~ts~~--GsaDvLe~L~Gi~~~~ 134 (221)
.++|..+.++...|+..+..+- -..|.|++| |++++.
T Consensus 128 ~~la~~~~~~~l~G~~~l~~RPi~~~l~~L~~l-Ga~i~~ 166 (450)
T 3nvs_A 128 AALCLGQGDYVLTGEPRMKERPIGHLVDALRQA-GAQIEY 166 (450)
T ss_dssp HHTTSSBCEEEEECSGGGGGSCCHHHHHHHHHT-TCEEEE
T ss_pred HHHhcCCcEEEEeCCcccccCCHHHHHHHHHHC-CCEEEE
Confidence 4444456789999987765542 357999999 999863
No 113
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=23.02 E-value=49 Score=29.56 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=27.4
Q ss_pred ceeeccCCCCCCcchhhHHHHHHhCCCcEEeecCCC
Q psy1330 78 VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRG 113 (221)
Q Consensus 78 ~vD~~gtGGdg~niSt~~a~vlAa~Gv~V~kHG~r~ 113 (221)
+|=+.||.|+|. ++...+-++.++|++|-.+++..
T Consensus 54 vI~VtGTNGKgS-t~~~l~~iL~~~G~~vg~~tSph 88 (437)
T 3nrs_A 54 IFTVAGTNGKGT-TCCTLEAILLAAGLRVGVYSSPH 88 (437)
T ss_dssp EEEEECSSSHHH-HHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEEEECCcChHH-HHHHHHHHHHHCCCcEEEECCCC
Confidence 788899988663 45566677888999999888764
No 114
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=22.69 E-value=82 Score=21.64 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHh
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTV 30 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il 30 (221)
.++++.+...-.||+.++..+++.++
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 2o97_B 4 SQLIDKIAAGADISKAAAGRALDAII 29 (90)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45555555555556655555555544
No 115
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.61 E-value=1.6e+02 Score=19.02 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=36.8
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
.+-.-|+..+..+.||++|..+.+. ++...++.+.-. +-+..+.+.+..+++++
T Consensus 10 ~~~~~ik~~R~~~gltq~elA~~~g------is~~~is~~E~G-~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 10 MIGQRIKQYRKEKGYSLSELAEKAG------VAKSYLSSIERN-LQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTT-SCCCCBHHHHHHHHHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcC-CCCCCCHHHHHHHHHHH
Confidence 3556788888889999999887763 566666665543 22345677777777665
No 116
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.42 E-value=2.5e+02 Score=26.45 Aligned_cols=184 Identities=12% Similarity=0.067 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHcc------C-CCHHHHHHHHHHHHhhCCCC----
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGT--AEDSQIGAMLMAMFIN------G-LTNEETIALTKSMVDSGETL---- 70 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~--~~~~Qi~AfL~alr~k------g-et~eEl~g~~~am~~~~~~~---- 70 (221)
..++...+.+|. .+++.+.++..++.. ..+.--..++-+|+.= | .+..++.-.+++|++....+
T Consensus 12 ~e~L~~All~gD---~~~~~~~l~eal~~~~~p~~Ii~~~L~pam~~VG~lw~~G~i~vpqv~~sa~~mk~av~~L~p~l 88 (579)
T 3bul_A 12 NKRLEYSLVKGI---TEFIEQDTEEARQQATRPCEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFI 88 (579)
T ss_dssp HHHHHHHHHHTC---CTTHHHHHHHHHHHSSSTTHHHHTHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666663 344444455444333 2232223444444432 2 35555555555554432111
Q ss_pred CCC----CCCCceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy1330 71 SWR----PEDIVVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSE 145 (221)
Q Consensus 71 ~~~----~~~~~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~ 145 (221)
... ...+.|=+...+||..- =-..++.++...|+.|.-- |. ..+++++.+.+++
T Consensus 89 ~~~~~~~~~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~L-------------------G~--~vP~e~iv~aa~~ 147 (579)
T 3bul_A 89 EASKEQCKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL-------------------GV--MVPAEKILRTAKE 147 (579)
T ss_dssp HTSSCCCCCSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEEC-------------------CS--SBCHHHHHHHHHH
T ss_pred hccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEEC-------------------CC--CCCHHHHHHHHHH
Confidence 100 11123334555788764 3456778888999999743 33 2578888888888
Q ss_pred hCceeecCCCcCChhhhhhHHHhhh---hCCCCCchhHHHHhhhhhhhcCCCeEEEeeec-----CCCCCCCCHHHHHHH
Q psy1330 146 VGCFIVGANKQLSPGDQILYRVRDV---TATVDNLSLCSASILSKKVAEGTKYLVIDVKV-----GEASFFKTYEKAKEM 217 (221)
Q Consensus 146 ~g~~fl~a~~~~~P~~~~l~~lR~~---lgTi~~~~l~~asilskk~~~g~~~~v~dv~~-----g~~a~~~~~~~a~~l 217 (221)
.+.-.+..+-...+.+..+..+-++ .| ......+-+...+...+. .++ |.....+|..+|-++
T Consensus 148 ~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g-~~i~ViVGGa~~~~~~a~--------~~i~p~~~GAD~ya~DA~~Av~~ 218 (579)
T 3bul_A 148 VNADLIGLSGLITPSLDEMVNVAKEMERQG-FTIPLLIGGATTSKAHTA--------VKIEQNYSGPTVYVQNASRTVGV 218 (579)
T ss_dssp HTCSEEEEECCSTHHHHHHHHHHHHHHHTT-CCSCEEEESTTCCHHHHH--------HHTGGGCSSCEEECCSHHHHHHH
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHHHcC-CCCeEEEEccccchhhhh--------hhhhhcccCCeEEECCHHHHHHH
Confidence 7776554442334444444333333 33 222223333334443321 122 655667777777777
Q ss_pred HHh
Q psy1330 218 AEL 220 (221)
Q Consensus 218 a~~ 220 (221)
|+.
T Consensus 219 a~~ 221 (579)
T 3bul_A 219 VAA 221 (579)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 117
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=22.29 E-value=1.6e+02 Score=25.61 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q psy1330 18 SPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGL 51 (221)
Q Consensus 18 t~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kge 51 (221)
|..|+-.++-.+.-...|+.++++|.-+||-++.
T Consensus 44 ~~~QiaAfL~alr~kget~eEiag~~~am~~~~~ 77 (345)
T 1khd_A 44 EDSQLAAALISMKMRGERPEEIAGAASALLADAQ 77 (345)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 4444444443333333344555555555554443
No 118
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.29 E-value=1.1e+02 Score=17.01 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIGAM 42 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~Af 42 (221)
+.|+.++-..++..+..| .+-.+++..
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~s~~~IA~~ 30 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-VSLHEMSRK 30 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-CCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 345655555555544333 455555443
No 119
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=22.21 E-value=2.5e+02 Score=24.69 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=45.9
Q ss_pred CCHHHHH---HHHHhhCceeecCCCcCChhhhhhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEEee-ec
Q psy1330 134 CSTADLK---AKLSEVGCFIVGANKQLSPGDQILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVIDV-KV 202 (221)
Q Consensus 134 ~s~~~~~---~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~dv-~~ 202 (221)
.+++++. +.|++.|+.|+=+| +. ....+..||+.++ ++.+...... ++.. -.+|.+.+|+ |+
T Consensus 223 w~~~~A~~~~~~l~~~~i~~iEqP--~~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~-~i~~---~a~d~v~~k~~~~ 295 (398)
T 4dye_A 223 WSVPDSVRAGIALEELDLEYLEDP--CV-GIEGMAQVKAKVRIPLCTNMCVVRFEDFAP-AMRL---NAVDVIHGDVYKW 295 (398)
T ss_dssp SCHHHHHHHHHHHGGGCCSEEECC--SS-HHHHHHHHHHHCCSCEEESSSCCSGGGHHH-HHHT---TCCSEEEECHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCEEcCC--CC-CHHHHHHHHhhCCCCEEeCCcCCCHHHHHH-HHHh---CCCCEEEeCcccc
Confidence 4667665 45667899999887 33 6777888998876 4444433222 2221 3588888888 44
Q ss_pred CCCCCCCCHHHHHHHHH
Q psy1330 203 GEASFFKTYEKAKEMAE 219 (221)
Q Consensus 203 g~~a~~~~~~~a~~la~ 219 (221)
| -+.++++++.
T Consensus 296 G------Git~~~~ia~ 306 (398)
T 4dye_A 296 G------GIAATKALAA 306 (398)
T ss_dssp T------SHHHHHHHHH
T ss_pred C------CHHHHHHHHH
Confidence 4 3566666654
No 120
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=22.18 E-value=1.9e+02 Score=21.03 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~~~ 66 (221)
+.+..++..+.+ +-||+||...+. ....+..|.=.+|-.+..||.++-++ |.+++++.
T Consensus 34 ~~V~~ILD~Ll~-~VLteee~e~I~----ae~T~q~k~R~Lld~v~~kG~~A~~~--F~~~L~e~ 91 (107)
T 3kat_A 34 TSVEVVLDKLHG-QVLSQEQYERVL----AENTRPSQMRKLFSLSQSWDRKCKDG--LYQALKET 91 (107)
T ss_dssp CCHHHHHHHHTT-TTSCHHHHHHHH----HCCSHHHHHHHHHHGGGGCCTTHHHH--HHHHHHHH
T ss_pred hhHHHHHHHHHH-hhCCHHHHHHHH----hCCCCHHHHHHHHHHhhcCCHHHHHH--HHHHHHHc
Confidence 456678888886 589999987644 35677889999999999999987664 67777764
No 121
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=22.07 E-value=91 Score=23.70 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
.+|.+|.+.+++.+- -..++.++-.++-.+ -...+.+|+..+.
T Consensus 73 ~i~~~el~~~l~~lg-~~~~~~~~~~l~~~~-~g~i~~~eF~~~~ 115 (196)
T 3dtp_E 73 FISKNDIRATFDSLG-RLCTEQELDSMVAEA-PGPINFTMFLTIF 115 (196)
T ss_dssp BCCHHHHHHHHHTTS-CCCCHHHHHHHHTTS-SSCCBHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHc-cCCCcHHHHHHHH
Confidence 467777666666542 345555555554433 2223566654444
No 122
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.77 E-value=1.5e+02 Score=20.93 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=39.4
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
..+-+.|+.++..+.||++|..+.+. ++...++.+--+- +..+.+.+..+++++-
T Consensus 11 ~~~g~~lk~~R~~~glsq~~lA~~~g------is~~~is~~E~g~--~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIE------IDPRYLTNIENKG--QHPSLQVLYDLVSLLN 65 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHHSC--CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHCCC--CCCCHHHHHHHHHHHC
Confidence 34667788888888899998877662 6777777766552 3467788877777763
No 123
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=21.63 E-value=1.4e+02 Score=26.38 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=71.6
Q ss_pred CCCCCCc--chhhHHHHHHhC----CCcEEeecCCCCCCCCcHHHHHhcCCCCCCCCCHHHHHHHHHhhCceeecCCCcC
Q psy1330 84 TGGVGDK--VSIPLVPALAAC----GLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQL 157 (221)
Q Consensus 84 tGGdg~n--iSt~~a~vlAa~----Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~s~~~~~~~l~~~g~~fl~a~~~~ 157 (221)
..|||-- +...+--|+.+. |+++--.=-. .|.. -.+.- |- .=|++..+.+++++.+++.+- -
T Consensus 9 ipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~-----~G~~-~~~~~-g~---~lp~~tl~~~~~~da~l~Gav--g 76 (359)
T 2y3z_A 9 LPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFP-----FGGA-AIDAF-GE---PFPEPTRKGVEEAEAVLLGSV--G 76 (359)
T ss_dssp ECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECC-----CTHH-HHHHH-SS---SSCHHHHHHHHHSSEEEECCC--C
T ss_pred ECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEe-----ccHH-HHHhh-CC---cCCHHHHHHHHHCCEEEEccc--c
Confidence 3578763 766666666655 5665433211 2322 22222 32 235677778888888888552 3
Q ss_pred Chhh----------hhhHHHhhhhC------CCCCchhHH-HHhhhhhhhcCCCeEEE-----eeecCC----------C
Q psy1330 158 SPGD----------QILYRVRDVTA------TVDNLSLCS-ASILSKKVAEGTKYLVI-----DVKVGE----------A 205 (221)
Q Consensus 158 ~P~~----------~~l~~lR~~lg------Ti~~~~l~~-asilskk~~~g~~~~v~-----dv~~g~----------~ 205 (221)
.|.. +.+..||+.|+ -+.++|.+. +|.+-+....+.|.+++ |+=.|. .
T Consensus 77 ~P~~~~~~~~~~~~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~ 156 (359)
T 2y3z_A 77 GPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWN 156 (359)
T ss_dssp CGGGTTSCGGGCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEEC
T ss_pred CCccccCCcccccchhHHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEE
Confidence 4432 22789999999 233334442 34443334457888887 333332 4
Q ss_pred CCCCCHHHHHHHHHh
Q psy1330 206 SFFKTYEKAKEMAEL 220 (221)
Q Consensus 206 a~~~~~~~a~~la~~ 220 (221)
.++=|.+..+|+|+.
T Consensus 157 ~~~~T~~~~eRIar~ 171 (359)
T 2y3z_A 157 TERYSKPEVERVARV 171 (359)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHH
Confidence 457788888888764
No 124
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=21.58 E-value=83 Score=21.63 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 5 ~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
.+-|++++..+.+|++|..+.+. ++...++.+.-. +..+.+.+..+++++.
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~G------iS~~tis~iE~G---~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVG------VSKSTFAKLGKN---ENVSLTVLLAICEYLN 76 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTT---CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcC---CCcCHHHHHHHHHHHC
Confidence 34577777888999999888763 688888877766 3368888888888774
No 125
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.58 E-value=47 Score=28.46 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=29.3
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
+|=+.|=||.|+. ++.-.|..+|..|.+|..-...
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6778899999985 6666788889999999998755
No 126
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=21.46 E-value=48 Score=27.50 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=26.5
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeec
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVS 110 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG 110 (221)
+|=+.|-||.|+. ++...|..+|..|.+|+.--
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4555589999985 77778888999999998754
No 127
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=21.39 E-value=1.2e+02 Score=27.25 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCceeeccCCCCCC----------c---chhhHHHHHHhCCCcEEeecCCCCCCCC-
Q psy1330 53 NEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGD----------K---VSIPLVPALAACGLKVPMVSGRGLDFSG- 118 (221)
Q Consensus 53 ~eEl~g~~~am~~~~~~~~~~~~~~~vD~~gtGGdg~----------n---iSt~~a~vlAa~Gv~V~kHG~r~~ts~~- 118 (221)
.+++..+.+++++.+..+.+......+-+.|.|-.+. | .+-+...+++..+-++...|+..+..+-
T Consensus 49 ~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~sgtt~r~l~g~l~~~~g~~~l~G~~~l~~RPi 128 (441)
T 3slh_A 49 GADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPM 128 (441)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEGGGTEEEEECCCTTCCCCCSSCEECTTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCC
T ss_pred cHHHHHHHHHHHHcCCEEEEecCCCEEEEeccccCCCCCCcceeeeccccccHHHHHHHHHhCCCEEEEeCCcccccCCH
Confidence 7899999999999998887631111344455431111 1 2334444555555678889988775543
Q ss_pred c-HHHHHhcCCCCCC
Q psy1330 119 G-TLDKLESIPGYQV 132 (221)
Q Consensus 119 G-saDvLe~L~Gi~~ 132 (221)
+ -.|.|++| |+++
T Consensus 129 ~~~~~~L~~l-Ga~i 142 (441)
T 3slh_A 129 KRIIDPLTLM-GAKI 142 (441)
T ss_dssp HHHHHHHHHT-TCEE
T ss_pred HHHHHHHHHc-CCEE
Confidence 2 45889999 9887
No 128
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.38 E-value=1.3e+02 Score=20.92 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q psy1330 2 SGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63 (221)
Q Consensus 2 ~~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am 63 (221)
..+-+-|++++..+.+|++|..+.+. ++...++.+.-.- +..+.+.+..+++++
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~--~~p~~~~l~~la~~l 61 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLN------VQTRTVAYYMSGE--TKPDIEKLIRLATYF 61 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHHTS--SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCC--CCCCHHHHHHHHHHh
Confidence 45677888888888999999887763 5777777776652 236788888777776
No 129
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=21.38 E-value=42 Score=28.97 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=69.8
Q ss_pred hhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHhcCCCCCCC-CCHHHHHHHHHhhCceeecCCCcCChhhhhhHHHhhh
Q psy1330 92 SIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVN-CSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDV 170 (221)
Q Consensus 92 St~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~-~s~~~~~~~l~~~g~~fl~a~~~~~P~~~~l~~lR~~ 170 (221)
....+.-+...|+++.--.... ..+-........ +.++ .+.+.+.+.+++.++-.+... .+-.....+..+.+.
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~--~~~~~~~~ad~~--~~~~~~d~~~l~~~~~~~~~d~v~~~-~~~~~~~~~a~~~~~ 93 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPN--AHKPCLNLADEI--SYMDISNPDEVEQKVKDLNLDGAATC-CLDTGIVSLARICDK 93 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSS--CCHHHHHHCSEE--EECCTTCHHHHHHHTTTSCCSEEECC-SCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCCC--CCCcchhhCCeE--EEecCCCHHHHHHHHHHcCCCEEEeC-CcchhHHHHHHHHHH
Confidence 3445566677899987763321 111111222111 2222 368888998888888666543 344455577888888
Q ss_pred hCCCCCchhHHHHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHHHHHHHh
Q psy1330 171 TATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAEL 220 (221)
Q Consensus 171 lgTi~~~~l~~asilskk~~~g~~~~v~dv~~g~~a~~~~~~~a~~la~~ 220 (221)
+|.+.+-+..+..+.+|. .+-.-..=.+||+=++..+.+.+++++.++.
T Consensus 94 ~gl~g~~~~~~~~~~dK~-~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 142 (403)
T 4dim_A 94 ENLVGLNEEAAIMCGDKY-KMKEAFKKYNVNTARHFVVRNENELKNALEN 142 (403)
T ss_dssp HTCSSCCHHHHHHHHCHH-HHHHHHHHHTCCCCCEECCCSHHHHHHHHHT
T ss_pred cCcCCCCHHHHHHHhCHH-HHHHHHHHcCCCCCCEEEeCCHHHHHHHHhc
Confidence 884444455544444443 2221111235677777788888888877653
No 130
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=21.34 E-value=1.9e+02 Score=19.25 Aligned_cols=43 Identities=5% Similarity=0.054 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHccCCCHHHHHH
Q psy1330 13 SGNELSPGEIAKFVNLTV-TGTAEDSQIGAMLMAMFINGLTNEETIA 58 (221)
Q Consensus 13 ~g~~Lt~eEa~~~~~~il-~g~~~~~Qi~AfL~alr~kget~eEl~g 58 (221)
-|.++|.+|..+++..+- +|.++-.+ |+..+..+..+.+++..
T Consensus 3 lg~~~~~~e~~~~~~~~d~~g~i~~~e---F~~~~~~~~~~~~~l~~ 46 (109)
T 1bu3_A 3 FSGILADADVAAALKACEAADSFNYKA---FFAKVGLTAKSADDIKK 46 (109)
T ss_dssp CSCSSCHHHHHHHHHHTCSTTCCCHHH---HHHHHTGGGSCHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCCCCcCcHHH---HHHHHHcChhhHHHHHH
Confidence 366788999998888763 56666555 44444445445554443
No 131
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.32 E-value=1.1e+02 Score=20.56 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 15 NELSPGEIAKFVNLTV---TGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il---~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
..-+.++.+++|+.+= +|.++..++..+|..+- ...+.+|+..+.+.+.
T Consensus 24 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-~~~~~~e~~~l~~~~D 75 (94)
T 2kz2_A 24 DTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLG-EKLTDEEVDEMIREAD 75 (94)
T ss_dssp CCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHT-CCCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHhC
Confidence 3457788888887764 46678888877776653 2357777777766553
No 132
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=21.31 E-value=2.4e+02 Score=25.61 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCC
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLT 52 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget 52 (221)
+..+++.+.+|+ .|..|+-.++-.+.-...|+.++++|..+||-.+..
T Consensus 22 a~~~~~~i~~G~-~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~ 69 (440)
T 2tpt_A 22 IRFFINGIRDNT-ISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTV 69 (440)
T ss_dssp HHHHHHHHHHTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBC
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc
Confidence 444555555543 456666555555555556666777777777766654
No 133
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.25 E-value=61 Score=28.01 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=34.8
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCCCCCCCCcHHHHHh
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLE 125 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r~~ts~~GsaDvLe 125 (221)
++=+.|-||.|+. ++...|..+|..|.+|..-... +..+..+.+.
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D---~~~~l~~~l~ 63 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD---PAHNLSDAFS 63 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC---CCCChhHHhc
Confidence 5556788999985 7888888899999999998877 3445567764
No 134
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.22 E-value=3.6e+02 Score=22.44 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHhhCceeecC---CCcCChhhhhhHHHhhhhC-------CCCCchhHHHHhhhhhhhcCCCeEEEe
Q psy1330 130 YQVNCSTADLKAKLSEVGCFIVGA---NKQLSPGDQILYRVRDVTA-------TVDNLSLCSASILSKKVAEGTKYLVID 199 (221)
Q Consensus 130 i~~~~s~~~~~~~l~~~g~~fl~a---~~~~~P~~~~l~~lR~~lg-------Ti~~~~l~~asilskk~~~g~~~~v~d 199 (221)
++-..++.++.+..++.|...+.. +..|.-.+..+..+|+... -|.+..++-- -.++|+|.|.|.
T Consensus 68 i~~~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~-----A~~~GAD~VlLi 142 (272)
T 3qja_A 68 LATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHE-----ARAHGADMLLLI 142 (272)
T ss_dssp -----CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHH-----HHHTTCSEEEEE
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHH-----HHHcCCCEEEEe
Confidence 455679999999999999876643 2133335778888998665 2222222222 236899999996
Q ss_pred eecC
Q psy1330 200 VKVG 203 (221)
Q Consensus 200 v~~g 203 (221)
+..-
T Consensus 143 ~a~l 146 (272)
T 3qja_A 143 VAAL 146 (272)
T ss_dssp GGGS
T ss_pred cccC
Confidence 5543
No 135
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=21.06 E-value=2.1e+02 Score=19.68 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC---CCHHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFING---LTNEETIALTKS 62 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kg---et~eEl~g~~~a 62 (221)
.+|.+|...++..+ .-..++.++-.++-.+-..+ .+.+|...+...
T Consensus 22 ~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 70 (142)
T 2bl0_C 22 FITKEGLQTVLKQF-GVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGR 70 (142)
T ss_dssp EEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHH
Confidence 47777877777765 33466666666665554433 456776665554
No 136
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=21.03 E-value=93 Score=21.18 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHH
Q psy1330 15 NELSPGEIAKFVNLTVTGTAEDSQIG 40 (221)
Q Consensus 15 ~~Lt~eEa~~~~~~il~g~~~~~Qi~ 40 (221)
+..|+|.+.++++.+.+|+++..+.+
T Consensus 12 r~Yte~~L~~Ai~aVr~g~mS~~~Aa 37 (70)
T 2cob_A 12 RQYNSEILEEAISVVMSGKMSVSKAQ 37 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHH
T ss_pred cccCHHHHHHHHHHHHcCCccHHHHH
Confidence 67899999999999999998877755
No 137
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=20.98 E-value=2e+02 Score=21.03 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy1330 16 ELSPGEIAKFVNLTVTGTAEDSQIGAMLMAM 46 (221)
Q Consensus 16 ~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~al 46 (221)
..|.+|+..++..+.+..-++.++.-.-.-|
T Consensus 65 pi~~~dI~~~It~vT~~~P~~eDi~RV~arL 95 (107)
T 3ol3_A 65 PVTDDDIRNAVHQIIEKEPTAEEINQVAARL 95 (107)
T ss_dssp CBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 3566666666666666666665555444333
No 138
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=20.94 E-value=1.2e+02 Score=21.99 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=35.0
Q ss_pred cHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy1330 3 GIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMA 45 (221)
Q Consensus 3 ~~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~a 45 (221)
++++.|++..+-++=+.-|+-+.++.-++..-++.|++-.|.+
T Consensus 15 rlR~kIkkfL~eRprNT~EIleh~nstMrhgttpqqlgNvLsk 57 (116)
T 2od5_A 15 RIREKIKKFLGDRPRNTAEILEHINSTMRHGTTSQQLGNVLSK 57 (116)
T ss_dssp HHHHHHHHHTSSSCEEHHHHHHHHHTSSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHhccCCCCCHHHHhhHHhc
Confidence 4678888888888888888888888888888888888877754
No 139
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.71 E-value=2.6e+02 Score=25.25 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTN 53 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~ 53 (221)
+..+++.+.+|+ .|..|+-.++-.+.-...|+.++++|..+||-.+...
T Consensus 21 a~~~~~~i~~G~-~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l 69 (423)
T 2dsj_A 21 LEAFLLGYLRDE-VPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVL 69 (423)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCC
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 445555555553 4666666666666555677777888888877777653
No 140
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=20.68 E-value=2.6e+02 Score=25.27 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCH
Q psy1330 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTN 53 (221)
Q Consensus 4 ~~~~i~k~~~g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~ 53 (221)
+..+++.+.+|+ .|..|+-.++-.+.-...|+.++++|..+||-.+...
T Consensus 21 a~~~~~~i~~G~-~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v 69 (433)
T 1brw_A 21 IEWIVRGYTNGD-IPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEML 69 (433)
T ss_dssp HHHHHHHHHTTS-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcC
Confidence 455666666654 5777777776666655567888888888888888763
No 141
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=20.67 E-value=45 Score=30.37 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred CHHHHHHHHH-HHHccCCCH---HHHH--HHHHHHHhhCCCCCCCCCCCceeeccCC-CCCCc------chhhHHHHHHh
Q psy1330 35 EDSQIGAMLM-AMFINGLTN---EETI--ALTKSMVDSGETLSWRPEDIVVDKHSTG-GVGDK------VSIPLVPALAA 101 (221)
Q Consensus 35 ~~~Qi~AfL~-alr~kget~---eEl~--g~~~am~~~~~~~~~~~~~~~vD~~gtG-Gdg~n------iSt~~a~vlAa 101 (221)
|---++++|+ +...+|.|. .|+. ...+.|++++..+.+.. . .+-+.|.. ..+.. ||.++-+++|+
T Consensus 170 Ssq~~s~lLlAa~~a~G~t~i~ep~~s~~~t~~~L~~~Ga~i~~~g-~-~i~I~g~~~l~~~~~~V~~D~s~Aa~~l~aa 247 (455)
T 3rmt_A 170 SAQMKSAILLAGLRAEGKTSVTEPAKTRDHTERMLEAFGVNIEKDG-L-TVSIEGGQMLTGQHVVVPGDISSAAFFLVAG 247 (455)
T ss_dssp CHHHHHHHHHHHHTSBSCEEEECSSCCCCHHHHHHHHTTCCEEEET-T-EEEECSCCCCBCCEEECCBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCcCcHHHHHHHHHHCCCCEEecC-C-EEEEcCCccccCCeeECCCCHHHHHHHHHHH
Confidence 4444455555 456677641 1222 36788889998887653 2 44454421 11221 66665555444
Q ss_pred ---CCCcEEeecCCCCCCCCcHHHHHhcCCCCCCCC
Q psy1330 102 ---CGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC 134 (221)
Q Consensus 102 ---~Gv~V~kHG~r~~ts~~GsaDvLe~L~Gi~~~~ 134 (221)
.|-.|...|-...+...+-.|+|+.+ |++++.
T Consensus 248 ai~~gg~v~i~~~~~~~~~~~il~~L~~m-Ga~i~~ 282 (455)
T 3rmt_A 248 AMVPHSRITLTNVGINPTRAGILEVLKQM-GATLAM 282 (455)
T ss_dssp HHSTTEEEEEEEEECCTTTTHHHHHHHHT-TCEEEE
T ss_pred HhcCCCEEEECCCCCchhHHHHHHHHHHc-CCEEEE
Confidence 36677776654334456778999999 999864
No 142
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=20.34 E-value=1.2e+02 Score=24.86 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHH
Q psy1330 21 EIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIA 58 (221)
Q Consensus 21 Ea~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g 58 (221)
|+.++++.+ +.+..++..+...+ .+|++++|.+.
T Consensus 206 ~~~~~L~~~---~l~~~~~~~l~~~v-~~~~~~~~vA~ 239 (256)
T 3l6g_A 206 EAYKVLDKF---NWTTKDMEAVMLDI-QNGKTPEEAAK 239 (256)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred HHHHHHHhc---cCCHHHHHHHHHHH-HcCCCHHHHHH
Confidence 677888887 88999999998888 78888888754
No 143
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.23 E-value=2.7e+02 Score=20.54 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHhC------CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q psy1330 4 IIELLRKKRS------GNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64 (221)
Q Consensus 4 ~~~~i~k~~~------g~~Lt~eEa~~~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~~am~ 64 (221)
|.+=|+.+.. ++.+|++|..+.++. .-..++...++.+--.-| +-.|.+-+..+++++-
T Consensus 8 ~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~-~G~~is~s~is~~E~G~r-~~Ps~~~l~~iA~~f~ 72 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGNR-TNPSGATMAALANFFR 72 (135)
T ss_dssp HHHHHHHHHHHCCCTTSCCCCHHHHHHHHHT-TTCCCCHHHHHHHHHTSS-CCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHCCCC-CCCCHHHHHHHHHHhC
Confidence 5566666666 678999999999982 222478877776655433 3567888888887763
No 144
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=20.15 E-value=47 Score=28.40 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=27.9
Q ss_pred ceeeccCCCCCCc-chhhHHHHHHhCCCcEEeecCC
Q psy1330 78 VVDKHSTGGVGDK-VSIPLVPALAACGLKVPMVSGR 112 (221)
Q Consensus 78 ~vD~~gtGGdg~n-iSt~~a~vlAa~Gv~V~kHG~r 112 (221)
++=..|-||.|+. ++...|..+|..|.+|..-...
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4445677899985 8888889999999999986544
No 145
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.06 E-value=3e+02 Score=22.25 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHccCCCHHHHHHHH
Q psy1330 15 NELSPGEIAK--FVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60 (221)
Q Consensus 15 ~~Lt~eEa~~--~~~~il~g~~~~~Qi~AfL~alr~kget~eEl~g~~ 60 (221)
.++|.+|+.. +...+.....++.+.+.++--+.-.|.|.+|++...
T Consensus 97 ~~~~d~ea~~~~l~eN~~R~~L~~~E~a~~~~~l~~~g~t~~~iA~~l 144 (230)
T 1vz0_A 97 KDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRV 144 (230)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3578777754 345566678888888877766667788888887543
Done!