RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1330
(221 letters)
>gnl|CDD|180276 PRK05820, deoA, thymidine phosphorylase; Reviewed.
Length = 440
Score = 309 bits (794), Expect = e-105
Identities = 117/221 (52%), Positives = 153/221 (69%), Gaps = 3/221 (1%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
E++RKKR G LS EI F++ GT D QI A+ MA+F NG+T E +ALT +M
Sbjct: 4 AQEIIRKKRDGGALSDEEIDWFIDGYTDGTVSDGQIAALAMAIFFNGMTRPERVALTLAM 63
Query: 64 VDSGETLSWRPEDI---VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
DSGE L W ++ +VDKHSTGGVGDK+S+ L P +AACG VPM+SGRGL +GGT
Sbjct: 64 RDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGGT 123
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLC 180
LDKLE+IPGY+ S + L +VG I+G L+P D+ LY +RDVTATV+++ L
Sbjct: 124 LDKLEAIPGYRAFPSNDRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESIPLI 183
Query: 181 SASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
+ASILSKK+AEG LV+DVKVG +F KTYE+A+E+A +
Sbjct: 184 TASILSKKLAEGLDALVLDVKVGSGAFMKTYEEARELARSM 224
>gnl|CDD|233961 TIGR02644, Y_phosphoryl, pyrimidine-nucleoside phosphorylase. In
general, members of this protein family are designated
pyrimidine-nucleoside phosphorylase, enzyme family EC
2.4.2.2, as in Bacillus subtilis, and more narrowly as
the enzyme family EC 2.4.2.4, thymidine phosphorylase
(alternate name: pyrimidine phosphorylase), as in
Escherichia coli. The set of proteins encompassed by
this model is designated subfamily rather than equivalog
for this reason; the protein name from this model should
be used when TIGR02643 does not score above trusted
cutoff [Purines, pyrimidines, nucleosides, and
nucleotides, Other].
Length = 405
Score = 287 bits (736), Expect = 1e-96
Identities = 113/219 (51%), Positives = 155/219 (70%), Gaps = 1/219 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
++++RKKR G +LS EI F+N G D Q+ A+LMA++ NG+T+EET LTK+M
Sbjct: 1 AVDIIRKKRDGKKLSDEEINFFINGYTNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAM 60
Query: 64 VDSGETLSW-RPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
+DSGE L VDKHSTGGVGDKVS+ L P +AACG+KV +SGRGL +GGT+D
Sbjct: 61 IDSGEVLDLSSLPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVAKMSGRGLGHTGGTID 120
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLESIPG++ S A+ +++VG I+G K L+P D+ LY +RDVT TVD++ L ++
Sbjct: 121 KLESIPGFRTELSEAEFIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTGTVDSIPLIAS 180
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G +V+DVKVG +F KT E AKE+A+L+
Sbjct: 181 SIMSKKLAAGADAIVLDVKVGSGAFMKTLEDAKELAKLM 219
>gnl|CDD|223291 COG0213, DeoA, Thymidine phosphorylase [Nucleotide transport and
metabolism].
Length = 435
Score = 272 bits (697), Expect = 2e-90
Identities = 113/219 (51%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+E++RKKR G LS EI F+N V GT D QI A LMA+F G+T +E ALT +M
Sbjct: 4 SVEIIRKKRDGKALSKEEIEFFINGYVNGTIPDYQISAFLMAIFFRGMTMDEIAALTMAM 63
Query: 64 VDSGETLSW-RPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
VDSGE L VVDKHSTGGVGDK S+ LVP +AA GL VP +SGRGL +GGTLD
Sbjct: 64 VDSGEVLDLSDIPGPVVDKHSTGGVGDKTSLILVPIVAAAGLPVPKMSGRGLGHTGGTLD 123
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLESIPG + ++ + G I+G + L+P D+ LY +RDVTATVD++ L ++
Sbjct: 124 KLESIPGVNLELDEIKFIEQVKDNGVAIIGQSGNLAPADKKLYALRDVTATVDSIPLIAS 183
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G +V+DVKVG +F KT E A+E+A+ +
Sbjct: 184 SIMSKKLAAGADAIVLDVKVGSGAFMKTVEDARELAKAM 222
>gnl|CDD|131691 TIGR02643, T_phosphoryl, thymidine phosphorylase. Thymidine
phosphorylase (alternate name: pyrimidine
phosphorylase), EC 2.4.2.4, is the designation for the
enzyme of E. coli and other Proteobacteria involved in
(deoxy)nucleotide degradation. It often occurs in an
operon with a deoxyribose-phosphate aldolase,
phosphopentomutase and a purine nucleoside
phosphorylase. In many other lineages, the corresponding
enzyme is designated pyrimidine-nucleoside phosphorylase
(EC 2.4.2.2); the naming convention imposed by this
model represents standard literature practice [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 437
Score = 256 bits (656), Expect = 2e-84
Identities = 114/219 (52%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
E++RKKR G+ LS EIA+F+N G+ + QI A MA+F NG+ +E +ALT +M D
Sbjct: 5 EIIRKKRDGHSLSDAEIAQFINGITDGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRD 64
Query: 66 SGETLSWRPEDI---VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
SG+ L WR D+ VVDKHSTGGVGD VS+ L P +AACG VPM+SGRGL +GGTLD
Sbjct: 65 SGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGGTLD 124
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLE+IPGY + A + + +VG I+G L+P D+ Y RDVTATV+++ L +A
Sbjct: 125 KLEAIPGYDIFPDPALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTATVESIPLITA 184
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SILSKK+A G LV+DVKVG +F TYE+++E+A L
Sbjct: 185 SILSKKLAAGLDALVMDVKVGNGAFMPTYEESEELARSL 223
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 206 bits (527), Expect = 5e-65
Identities = 97/218 (44%), Positives = 142/218 (65%), Gaps = 1/218 (0%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
++L++KKR G EL+ EI F+ GT D Q+ A+ MA++ +T+ E LT +MV
Sbjct: 4 VDLIQKKRDGKELTTEEINFFIEGYTNGTIPDYQMSALAMAIYFKDMTDRERADLTMAMV 63
Query: 65 DSGETLSWRP-EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
+SG+T+ E I VDKHSTGGVGD ++ L P +AA G+ V +SGRGL +GGT+DK
Sbjct: 64 NSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAFGVPVAKMSGRGLGHTGGTIDK 123
Query: 124 LESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSAS 183
LESI G+ V S D ++E ++G + L+P D+ LY +RDVTATV+++ L ++S
Sbjct: 124 LESIKGFHVEISQEDFIKLVNENKVAVIGQSGNLTPADKKLYALRDVTATVNSIPLIASS 183
Query: 184 ILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
I+SKK+A G +V+DVK G +F KT E A+E+A +
Sbjct: 184 IMSKKIAAGADAIVLDVKTGAGAFMKTVEDAEELAHAM 221
>gnl|CDD|235289 PRK04350, PRK04350, thymidine phosphorylase; Provisional.
Length = 490
Score = 143 bits (363), Expect = 3e-40
Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 16/224 (7%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
+ +RKK G +L EI + V G D ++ A L A INGL +E ALT++MV
Sbjct: 82 LSAIRKKIDGEKLDKEEIEAIIRDIVAGRYSDIELSAFLTASAINGLDMDEIEALTRAMV 141
Query: 65 DSGETLSWRPEDIVVDKHSTGGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
++GE L W VVDKHS GGV G++ ++ +VP +AA GL +P S R + GT D
Sbjct: 142 ETGERLDW-DRPPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAGTADT 200
Query: 124 LESIPGYQVNCSTADLKAKLSEV-GCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCS- 181
+E + V+ S ++K + +V GC + G LSP D IL RV LS+
Sbjct: 201 MEVLA--PVDLSVEEIKRVVEKVGGCLVWGGAVNLSPADDILIRVERP------LSIDPR 252
Query: 182 ----ASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
ASILSKK+A G+ ++VID+ VG + ++ E+A+ +A L
Sbjct: 253 GQLVASILSKKIAAGSTHVVIDIPVGPTAKVRSVEEARRLARLF 296
>gnl|CDD|233962 TIGR02645, ARCH_P_rylase, putative thymidine phosphorylase.
Members of this family are closely related to
characterized examples of thymidine phosphorylase (EC
2.4.2.4) and pyrimidine nucleoside phosphorylase (RC
2.4.2.2). Most examples are found in the archaea, but
other examples in Legionella pneumophila str. Paris and
Rhodopseudomonas palustris CGA009.
Length = 493
Score = 142 bits (360), Expect = 5e-40
Identities = 81/219 (36%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
+ +RKK G +L EIA V V D +I A L A ING+T +E ALT +M
Sbjct: 87 LRAIRKKIDGAKLDQHEIASIVGDIVDERLSDVEISAFLTASAINGMTMDEIEALTIAMA 146
Query: 65 DSGETLSWRPEDIVVDKHSTGGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
D+GE L W + ++DKHS GGV G+K S+ +VP +AA GL +P S R + + GT D
Sbjct: 147 DTGEMLEW-DREPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLIPKTSSRAITSAAGTADT 205
Query: 124 LESIPGYQVNCSTADLKAKLSEV-GCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
+E + +V S ++K + +V GC + G L+P D +L RV + ++D + A
Sbjct: 206 MEVLT--RVALSAEEIKRIVEKVGGCLVWGGALNLAPADDVLIRV-ERPLSIDPRAQMLA 262
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G+ +++ID+ VG + ++ ++A+ +A L
Sbjct: 263 SIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLF 301
>gnl|CDD|132370 TIGR03327, AMP_phos, AMP phosphorylase. This enzyme family is
found, so far, strictly in the Archaea, and only in
those with a type III Rubisco enzyme. Most of the
members previously were annotated as thymidine
phosphorylase, or DeoA. The AMP metabolized by this
enzyme may be produced by ADP-dependent sugar kinases.
Length = 500
Score = 134 bits (339), Expect = 5e-37
Identities = 72/216 (33%), Positives = 123/216 (56%), Gaps = 6/216 (2%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
+E ++KK G +L+ EI V V D +I A + A +ING+ +E LT++M
Sbjct: 88 VEYIKKKMDGEKLTKDEIRAIVADIVDDKLSDIEISAFVTASYINGMDMDEIEWLTRAMA 147
Query: 65 DSGETLSWRPEDIVVDKHSTGGV-GDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
++G+ LS+ ++DKHS GGV G+K+S+ +VP +AA GL +P S R + + GT D
Sbjct: 148 ETGDMLSFD-RHPIMDKHSIGGVPGNKISLLVVPIVAAAGLTIPKTSSRAITSAAGTADV 206
Query: 124 LESIPGYQVNCSTADLKAKLSEV-GCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
+E + V S ++K + + GC + G L+P D + +V + ++D A
Sbjct: 207 MEVLA--PVEFSADEIKRIVEKTGGCLVWGGATNLAPADDKIIKV-ERPLSIDPRGQMLA 263
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMA 218
S+++KK A G ++VID+ VG+ + KT E+ +++A
Sbjct: 264 SVMAKKGAIGADHVVIDIPVGKGAKVKTVEEGRKLA 299
>gnl|CDD|216013 pfam00591, Glycos_transf_3, Glycosyl transferase family, a/b
domain. This family includes anthranilate
phosphoribosyltransferase (TrpD), thymidine
phosphorylase. All these proteins can transfer a
phosphorylated ribose substrate.
Length = 254
Score = 99.6 bits (249), Expect = 1e-25
Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 75 EDIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQ 131
+VD TGG GD +S AACG+KV R + G+ D LE++ G
Sbjct: 1 LGDIVDIVGTGGDGDNTFNISTAAAFVAAACGVKVAKHGNRSVSSKSGSADVLEAL-GIN 59
Query: 132 VNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAE 191
+ + ++ L EVG + A P + + VR T +L L+
Sbjct: 60 LELTPEQVRKLLDEVGVGFLFA-PNYHPAMKHVAPVRKELGTRTIFNLLGP--LTNPARP 116
Query: 192 GTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
G + L + K + E+ E L+
Sbjct: 117 GLQLLGVYSKELVGPIAEVLERLGEERALV 146
>gnl|CDD|145834 pfam02885, Glycos_trans_3N, Glycosyl transferase family, helical
bundle domain. This family includes anthranilate
phosphoribosyltransferase (TrpD), thymidine
phosphorylase. All these proteins can transfer a
phosphorylated ribose substrate.
Length = 66
Score = 74.1 bits (183), Expect = 7e-18
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
I EL++K G +LS E ++ ++G A D+QI A LMA+ I G T EE K+M
Sbjct: 2 IKELIKKLLRGEDLSREEAEALMDAILSGEASDAQIAAFLMALRIKGETPEEIAGAAKAM 61
Query: 64 VDSGE 68
+S
Sbjct: 62 RESAT 66
>gnl|CDD|233329 TIGR01245, trpD, anthranilate phosphoribosyltransferase. In many
widely different species, including E. coli, Thermotoga
maritima, and Archaeoglobus fulgidus, this enzymatic
domain (anthranilate phosphoribosyltransferase) is found
C-terminal to glutamine amidotransferase; the fusion
protein is designated anthranilate synthase component II
(EC 4.1.3.27) [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 330
Score = 64.6 bits (158), Expect = 3e-12
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 8 LRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDSG 67
L K G +LS E + + ++G A +QI A+L A+ I G T EE K+M +
Sbjct: 1 LEKLIDGKDLSRDEAEQLMKEIMSGEASPAQIAAILAALRIKGETPEEITGFAKAMREHA 60
Query: 68 ETLSWRPEDIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKL 124
+ RP + +VD TGG G +S AA G+KV R + G+ D L
Sbjct: 61 VKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVL 120
Query: 125 ESIPGYQVNCSTADLKAKLSEVG-CFI 150
E++ G ++ + L E G F+
Sbjct: 121 EAL-GVNLDLGPEKVARSLEETGIGFL 146
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid
transport and metabolism].
Length = 338
Score = 62.2 bits (152), Expect = 1e-11
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
++L+K G +L E + ++G A +QIGA L A+ I G T EE ++M +
Sbjct: 6 KILKKLGRGRDLDREEARELFKAILSGEASPAQIGAFLTALRIKGETPEEIAGFAEAMRE 65
Query: 66 SGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPA----LAACGLKVPMVSGRGLDFSGGTL 121
L P VD TGG G +I + A AA G+ V R + G+
Sbjct: 66 HAPKLP-VPAADPVDIVGTGGDGAN-TINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSA 123
Query: 122 DKLESIPGYQVNCSTADLKAKLSEVG-CFI 150
D LE++ G + S L E G F+
Sbjct: 124 DVLEAL-GVNLELSPEQAARALEETGIGFL 152
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 56.3 bits (136), Expect = 2e-09
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
I L+K G +LS E + G A D+QI L A+ + G T +E M
Sbjct: 195 IKSYLKKLVEGEDLSFEEAEDVMEDITDGNATDAQIAGFLTALRMKGETADELAGFASVM 254
Query: 64 VDSGETLSWRPEDIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
+ + P VD TGG G +S +AA G+ V R + G+
Sbjct: 255 REKSRHIP-APSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGS 313
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVGC 148
D LE++ G ++ + + + L E G
Sbjct: 314 ADVLEAL-GVKLEMTPEEAASVLRETGF 340
>gnl|CDD|234682 PRK00188, trpD, anthranilate phosphoribosyltransferase;
Provisional.
Length = 339
Score = 49.7 bits (120), Expect = 3e-07
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
ELL K G +LS E + ++ ++G A +QI A L A+ + G T +E ++M +
Sbjct: 5 ELLEKLVEGEDLSEEEAEELMDAIMSGEATPAQIAAFLTALRVKGETVDEIAGAARAMRE 64
Query: 66 SGETLSWRPEDIVVDKHSTGGVGDK-------VSIPLVPALAACGLKVP-----MVSGRG 113
+ D VD TGG G + AA G+KV VS +
Sbjct: 65 HAVPV--PDPDDAVDIVGTGGDGANTFNISTAAAF----VAAAAGVKVAKHGNRSVSSK- 117
Query: 114 LDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVG-CFI 150
SG D LE++ G ++ S + L EVG F+
Sbjct: 118 ---SGSA-DVLEAL-GVNLDLSPEQVARCLEEVGIGFL 150
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 41.9 bits (98), Expect = 1e-04
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Query: 7 LLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVDS 66
+L K LS E + + V G + Q+ A L++M I G E +++++
Sbjct: 203 ILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLEN 262
Query: 67 GETLSWRPEDIVVDKHSTGGVG-DKVSIPLVPAL--AACGLKVPMVSGRGLDFSGGTLDK 123
RP+ + D TGG G + ++I A AACGLKV R + G+ D
Sbjct: 263 AAPFP-RPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDL 321
Query: 124 LESIPGYQVNCSTADLKAKLSEVG-CFI 150
L + G ++ + + L E+G CF+
Sbjct: 322 LAAF-GINLDMNADKSRQALDELGVCFL 348
>gnl|CDD|168934 PRK07394, PRK07394, hypothetical protein; Provisional.
Length = 342
Score = 32.2 bits (74), Expect = 0.20
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 6 ELLRKKRSGNELSPG----EIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEE 55
ELL+K SG S E A + L + G A +QIGA L+A I T EE
Sbjct: 7 ELLKKVGSGEHTSKDLTREEAADALKLMLLGEATPAQIGAFLIAHRIKRPTPEE 60
>gnl|CDD|215345 PLN02641, PLN02641, anthranilate phosphoribosyltransferase.
Length = 343
Score = 31.6 bits (72), Expect = 0.24
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 34 AEDSQIGAMLMAMFINGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVG-DKVS 92
A+++QI A L+ + G T EE L ++M+ + VD TGG G + V+
Sbjct: 33 ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKV--DGLVDAVDIVGTGGDGANTVN 90
Query: 93 IPLVPAL--AACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVG 147
I ++ AACG KV R + G+ D LE++ G ++ +K + EVG
Sbjct: 91 ISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEAL-GVAIDLGPEGVKRCVEEVG 146
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated.
Length = 323
Score = 31.4 bits (72), Expect = 0.27
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 9 RKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTK 61
+ KR L+ E + + + + G ED Q+GA LM + + T EE +
Sbjct: 13 KGKRGRRSLTREEARQAMGMILDGEVEDDQLGAFLMLLRVKEETAEELAGFVE 65
>gnl|CDD|237805 PRK14726, PRK14726, bifunctional preprotein translocase subunit
SecD/SecF; Provisional.
Length = 855
Score = 30.8 bits (70), Expect = 0.63
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 91 VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFI 150
+S+ + A GL + G+DF+GG+L ++ + G N AD++A+L+E+
Sbjct: 563 LSLASLVLFATVGLNL------GIDFTGGSLIEVRAKQG---NADIADIRARLNELNLGE 613
Query: 151 VGANKQLSPGDQILYRV 167
V + SP D L R+
Sbjct: 614 VQVERFGSPRD-ALIRI 629
>gnl|CDD|218017 pfam04305, DUF455, Protein of unknown function (DUF455).
Length = 250
Score = 30.2 bits (69), Expect = 0.68
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 106 VPMV-SGRGLDFSGGTLDKLES 126
VP V RGLD + G + KLE
Sbjct: 153 VPRVLEARGLDATPGIIAKLEG 174
>gnl|CDD|224816 COG1904, UxaC, Glucuronate isomerase [Carbohydrate transport and
metabolism].
Length = 463
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
+ K+ +G LS E +F +T A+ S +M + L N K D
Sbjct: 252 AIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPD 311
Query: 66 SG 67
+G
Sbjct: 312 TG 313
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl
transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase; Reviewed.
Length = 409
Score = 28.3 bits (64), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 54 EETIALTKSMVDSGETLSWRPE 75
ET+AL + MV SGE + PE
Sbjct: 154 PETLALMREMVASGELDALTPE 175
>gnl|CDD|237427 PRK13559, PRK13559, hypothetical protein; Provisional.
Length = 361
Score = 28.2 bits (63), Expect = 3.9
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 64 VDSGE-TLSWRP----EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSG 118
D G ++SW+P +D GG P P LA G ++
Sbjct: 287 ADQGRISISWKPSPEGAGFRIDWQEQGG-------PTPPKLAKRGFGTVIIGAMVESQLN 339
Query: 119 GTLDK 123
G L+K
Sbjct: 340 GQLEK 344
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 27.1 bits (61), Expect = 9.1
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 112 RGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVT 171
G+DF+GGT ++ + ++A L E+G V S +Q+L R +
Sbjct: 480 LGIDFTGGTRYEIRT----DQPVDLEQVRADLKELGLGEVNIVTFGSDNNQVLVRTYGIL 535
Query: 172 ATVDNLSLCSASILSKKVAEGTKYLVI-DVKVG 203
+ + + L + + VG
Sbjct: 536 SDDEEADTEIVAKLKNALKNDKGGTIPSSETVG 568
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,984,454
Number of extensions: 1010612
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 31
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.5 bits)