RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1330
(221 letters)
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 300 bits (770), Expect = e-102
Identities = 92/218 (42%), Positives = 137/218 (62%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ +R+KR G + ++ F+ + D Q+ A LMA F+ GL EET+ LT++M
Sbjct: 3 PVAFIREKREGKKHRREDLEAFLLGYLRDEVPDYQVSAWLMAAFLRGLDPEETLWLTETM 62
Query: 64 VDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDK 123
SG+ L VDKHS+GGVGDKVS+ + P LAA G +SGRGL +GGT+DK
Sbjct: 63 ARSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDK 122
Query: 124 LESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSAS 183
LES+PG++ + A+ + VG I + L+P D LY +RDVTATV+++ L ++S
Sbjct: 123 LESVPGWRGEMTEAEFLERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASS 182
Query: 184 ILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
I+SKK+A G + +V+DVKVG +F KT E+A+ +A+ +
Sbjct: 183 IMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAKTM 220
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 298 bits (766), Expect = e-101
Identities = 95/219 (43%), Positives = 140/219 (63%), Gaps = 1/219 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+++L+ KKR G L+ EI V G D Q+ A+ MA++ G+T EET ALT +M
Sbjct: 3 MVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAM 62
Query: 64 VDSGETLSWRP-EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
V SGE L + VDKHSTGGVGD ++ L P +A+ G+ V +SGRGL +GGT+D
Sbjct: 63 VQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTID 122
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLES+PG+ V S + ++E G I+G L+P D+ LY +RDVTATV+++ L ++
Sbjct: 123 KLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSIPLIAS 182
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G +V+DVK G +F K ++A+ +A ++
Sbjct: 183 SIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVM 221
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 298 bits (764), Expect = e-101
Identities = 88/219 (40%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+I+++ KKR G+ L+ EI F+ V G D Q ++ MA++ + ++E +ALT +M
Sbjct: 6 MIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERVALTMAM 65
Query: 64 VDSGETLSWRP-EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLD 122
V+SG+ + + + VDKHSTGGVGD ++ L P +AA + V +SGRGL +GGT+D
Sbjct: 66 VNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTID 125
Query: 123 KLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSA 182
KLE+I G+ V A ++E +VG + L+P D+ LY +RDVT TV+++ L ++
Sbjct: 126 KLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLIAS 185
Query: 183 SILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
SI+SKK+A G +V+DVK G +F KT E A+ +A +
Sbjct: 186 SIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAM 224
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 296 bits (761), Expect = e-100
Identities = 103/224 (45%), Positives = 142/224 (63%), Gaps = 3/224 (1%)
Query: 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60
+ E++RKKR G+ LS EI F+N T + QI A+ M +F + +T E ++LT
Sbjct: 1 LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLT 60
Query: 61 KSMVDSGETLSW---RPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFS 117
+M DSG L W +VDKHSTGGVGD S+ L P +AACG +PM+SGRGL +
Sbjct: 61 MAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHT 120
Query: 118 GGTLDKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNL 177
GGTLDKLESIPG+ + + + +VG I+G L+P D+ Y RD+TATVD++
Sbjct: 121 GGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSI 180
Query: 178 SLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
L +ASIL+KK+AEG LV+DVKVG +F TYE ++ +AE +
Sbjct: 181 PLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAI 224
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 296 bits (760), Expect = 1e-99
Identities = 122/220 (55%), Positives = 154/220 (70%), Gaps = 2/220 (0%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ EL+R KR G LS +I FV V G+A+ +QIGAMLMA+ + G+ EET LT+++
Sbjct: 30 LPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQAL 89
Query: 64 VDSGETLSWR--PEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTL 121
SG+ L W +VDKHSTGGVGDKVS+ L PALAACG KVPM+SGRGL +GGTL
Sbjct: 90 AQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTL 149
Query: 122 DKLESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCS 181
DKLESIPG+ V S ++ L + GC IVG ++QL P D ILY RDVTATVD+L L +
Sbjct: 150 DKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLIT 209
Query: 182 ASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
ASILSKK+ EG LV+DVK G A+ F E+A+E+A+ L
Sbjct: 210 ASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTL 249
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide
binding fold; 1.86A {Pectobacterium carotovorum} SCOP:
a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 55.2 bits (134), Expect = 2e-09
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 1 MSGIIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALT 60
+ +L K ++ E + V G EDSQ+ A L++M + G EE
Sbjct: 10 IFTHQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAA 69
Query: 61 KSMVDSGETLSWRPEDIVVDKHSTGGVGDK---VS--IPLVPALAACGLKVP-----MVS 110
+++ + RP+ D TGG G +S V A+CG KV V
Sbjct: 70 SALLADAQPFP-RPDYDFADIVGTGGDGTNSINISTASAFV--AASCGAKVAKHGNRSVC 126
Query: 111 GRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVG-CFI 150
G+ D L++ G +++ S D + L ++ CF+
Sbjct: 127 QP----LAGSCDLLQAF-GIRLDMSAEDSRQALDDLNVCFL 162
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics,
NPPSFA, national project O structural and functional
analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1
c.27.1.1 PDB: 1v8g_A
Length = 329
Score = 53.7 bits (130), Expect = 8e-09
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 6/149 (4%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMV 64
++ ++K G L E + + + G + +L+A+ + G E A+ ++M
Sbjct: 1 MDAVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMR 60
Query: 65 DSGETLSWRPEDIVVDKHSTGGVGDK-VSIPLVPAL--AACGLKVPMVSGRGLDFSGGTL 121
++ L ++D TGG G +++ + AL AA G+ V R G+
Sbjct: 61 EAARPLR-VHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSA 119
Query: 122 DKLESIPGYQVNCSTADLKAKLSEVG-CF 149
D LE++ G + + + E+G F
Sbjct: 120 DLLEAL-GVDLEAPPERVGEAIEELGFGF 147
>3qr9_A Anthranilate phosphoribosyltransferase; anthranilic acids, M
tryptophan, magnesium binding, phosphoribosyl
pyrophosphate transferase; 1.87A {Mycobacterium
tuberculosis} PDB: 1zvw_A* 2bpq_A
Length = 377
Score = 50.3 bits (121), Expect = 1e-07
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
++L + +L+ G+ A ++ +TG A +QI A +AM + T +E L M+
Sbjct: 28 QILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87
Query: 66 SGETLS-WRPEDIVVDKHSTGGVGDK-VSIPLVPAL--AACGLKVPMVSGRGLDFSGGTL 121
L D VD TGG G V++ + A+ AA G+ V R G
Sbjct: 88 HAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGA 147
Query: 122 DKLESIPGYQVNCSTADLKAKLSEVG-CF 149
D LE++ G +++ + L+EVG F
Sbjct: 148 DTLEAL-GVRIDLGPDLVARSLAEVGIGF 175
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative, PSI; 1.85A {Nostoc SP}
Length = 374
Score = 49.1 bits (118), Expect = 3e-07
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 22/164 (13%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
LL++ G LS + A+ + ++ GA+L A+ G++ +E + + +
Sbjct: 27 WYLLLQQLIDGESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSADELTGMAEVL 86
Query: 64 ---------VDSGETLSWRPEDIVVDKHSTGGVGDK-------VSIPLVPALAACGLKVP 107
+ + ++D TGG G V+ AA G+ V
Sbjct: 87 QSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTAVAF----VAAAYGVPVA 142
Query: 108 MVSGRGLDFSGGTLDKLESIPGYQVNCSTADLKAKLSEVG-CFI 150
R G+ D LE++ G + S ++A L EVG F+
Sbjct: 143 KHGNRSASSLTGSADVLEAL-GVNLGASPEKVQAALQEVGITFL 185
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 44.5 bits (106), Expect = 9e-06
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
I E+L+K + ++L E + + G + + A+L+A+ + G + E + ++M
Sbjct: 3 INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAM 62
Query: 64 VDSGETLSWRPEDIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGT 120
+ + +D TGG G VS L+ V R + G+
Sbjct: 63 RELAIKI---DVPNAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKSGS 118
Query: 121 LDKLESIPGYQVNCSTADLKAKLSEVG-CF 149
D LE++ GY + K +++ F
Sbjct: 119 ADVLEAL-GYNIIVPPERAKELVNKTNFVF 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 90/241 (37%)
Query: 11 KRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFI-NGLTNEETIALTKSMVDSGET 69
K G +PGE+ ++ TG ++ ++ A+ I + E + +
Sbjct: 254 KLLG--FTPGELRSYLK-GATGHSQG-----LVTAVAIAETDSWESFFVSVRKAI---TV 302
Query: 70 LSWRPEDIVVDKHSTGGVGDKVSIPLVPALAA------CGLKVPMVSGRGLDFSGGTLDK 123
L + I V + S+P P++ G+ PM+S L T ++
Sbjct: 303 LFF----IGVRCYEAYPN---TSLP--PSILEDSLENNEGVPSPMLSISNL-----TQEQ 348
Query: 124 LESIPGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQI-------------------L 164
++ ++ N L G Q+ L
Sbjct: 349 VQD----------------------YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 165 Y----RVRDVTA--TVDNLSLCSASILSK-KVAEGTKYLVIDVKVGEASFFKTY-EKAKE 216
Y +R A +D S S+ K+ ++L + + F A +
Sbjct: 387 YGLNLTLRKAKAPSGLDQ----SRIPFSERKLKFSNRFLPVA-----SPFHSHLLVPASD 437
Query: 217 M 217
+
Sbjct: 438 L 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 4e-04
Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 59/242 (24%)
Query: 6 ELLRKKRSGNEL-------SPGEIAKFVNLT----VTGTAEDSQIGAMLMA--------- 45
LL+ K N L + F NL+ +T T Q+ L A
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLT-TR-FKQVTDFLSAATTTHISLD 292
Query: 46 MFINGLTNEETIALTKSMVD-SGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPALAACGL 104
LT +E +L +D + L P +++ + P ++ A +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDL---PREVL-----------TTN-PRRLSIIAESI 337
Query: 105 KVPMVSGRGLDFSGGTLDKLESIPGYQVNC-STADLKAKLSEVGCFIVGAN---KQLSP- 159
+ + ++ DKL +I +N A+ + + F A+ LS
Sbjct: 338 RDGL--ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 160 -GDQILYRVRDVTATVDNLSLCSASILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMA 218
D I V V L S++ K+ E T + + + + K +
Sbjct: 396 WFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTISI-PSI------YLELKVKLENEY 443
Query: 219 EL 220
L
Sbjct: 444 AL 445
Score = 35.2 bits (80), Expect = 0.014
Identities = 35/236 (14%), Positives = 68/236 (28%), Gaps = 75/236 (31%)
Query: 1 MSGIIELLRKKRSGNELSPGEIAK-FVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIAL 59
++ IIE S N L P E K F L+V + I +L+++ + + + +
Sbjct: 355 LTTIIES-----SLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 60 TKSMVDSGETLSWRPE------DIVVD----------KHSTGGVGDKVSIPLVPALAACG 103
+ E I ++ H + + D +IP
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIP--------- 456
Query: 104 LKVPMVSGRGLDFSGGTLDKLES-----IPGYQV-NCSTAD--------------LKAKL 143
+ D L+ I G+ + N + L+ K+
Sbjct: 457 --------KTFDSDDLIPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 144 SEVGCFIVGANKQLSP-GDQILYR--VRD--------VTATVDNLSLCSASILSKK 188
+ L+ Y+ + D V A +D L +++ K
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
>3r1m_A Putative uncharacterized protein ST0318; sulfolobus
fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg
binding, metal binding protein; 1.50A {Sulfolobus
tokodaii} PDB: 1umg_A*
Length = 385
Score = 27.2 bits (60), Expect = 4.2
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 184 ILSKKVAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
++ + G K+ V+DV GEA ++ ++ L+
Sbjct: 157 VIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALI 194
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 27.5 bits (62), Expect = 4.7
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 17 LSPGEIAKFVNLT---VTGTAEDSQ--IGAMLMAMFINGLTNEETIALTKSMVDSGETLS 71
LS G + F T V G + IG + M +G N + G ++
Sbjct: 479 LSLGSVEAFEAPTGKGVVGQVDGHHVAIGNARL-MQEHGGDNAPLFEKADELRGKGASVM 537
Query: 72 WRPEDIVVDKHSTG--GVGDKV---SIPLVPALAACGLKVPMVSG 111
+ + VD + V D + + + L G+++ M++G
Sbjct: 538 F----MAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTG 578
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 26.3 bits (59), Expect = 8.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 49 NGLTNEETIALTKSMVDSGETLSWRPEDIVVDKHSTGGVGDKVSIPLVPA 98
G + E+T+A + + + G L + S+GGV +V IPL P
Sbjct: 234 GGWSLEDTLAFARRLKELGVDL------LDC---SSGGVVLRVRIPLAPG 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,282,712
Number of extensions: 191607
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 22
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.7 bits)