RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1330
(221 letters)
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 130 bits (328), Expect = 6e-38
Identities = 91/152 (59%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 70 LSW--RPEDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESI 127
L W +VDKHSTGGVGDKVS+ L PALAACG KVPM+SGRGL +GGTLDKLESI
Sbjct: 2 LEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESI 61
Query: 128 PGYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSK 187
PG+ V S ++ L + GC IVG ++QL P D ILY RDVTATVD+L L +ASILSK
Sbjct: 62 PGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSK 121
Query: 188 KVAEGTKYLVIDVKVGEASFFKTYEKAKEMAE 219
K+ EG LV+DVK G A+ F E+A+E+A+
Sbjct: 122 KLVEGLSALVVDVKFGGAAVFPNQEQARELAK 153
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 126 bits (317), Expect = 2e-36
Identities = 76/153 (49%), Positives = 104/153 (67%), Gaps = 3/153 (1%)
Query: 72 WRPEDI---VVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIP 128
W+ + +VDKHSTGGVGD S+ L P +AACG +PM+SGRGL +GGTLDKLESIP
Sbjct: 2 WKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIP 61
Query: 129 GYQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKK 188
G+ + + + +VG I+G L+P D+ Y RD+TATVD++ L +ASIL+KK
Sbjct: 62 GFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKK 121
Query: 189 VAEGTKYLVIDVKVGEASFFKTYEKAKEMAELL 221
+AEG LV+DVKVG +F TYE ++ +AE +
Sbjct: 122 LAEGLDALVMDVKVGSGAFMPTYELSEALAEAI 154
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 260
Score = 119 bits (300), Expect = 7e-34
Identities = 66/145 (45%), Positives = 98/145 (67%)
Query: 75 EDIVVDKHSTGGVGDKVSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC 134
+ VDKHSTGGVGD ++ L P +A+ G+ V +SGRGL +GGT+DKLES+PG+ V
Sbjct: 5 RGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEI 64
Query: 135 STADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGTK 194
S + ++E G I+G L+P D+ LY +RDVTATV+++ L ++SI+SKK+A G
Sbjct: 65 SKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSIPLIASSIMSKKIAAGAD 124
Query: 195 YLVIDVKVGEASFFKTYEKAKEMAE 219
+V+DVK G +F K ++A+ +A
Sbjct: 125 AIVLDVKTGAGAFMKKLDEARRLAR 149
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 78.6 bits (194), Expect = 4e-20
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+++L+ KKR G L+ EI V G D Q+ A+ MA++ G+T EET ALT +M
Sbjct: 3 MVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAM 62
Query: 64 VDSGETL 70
V SGE L
Sbjct: 63 VQSGEML 69
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 74.8 bits (184), Expect = 1e-18
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
E++RKKR G+ LS EI F+N T + QI A+ M +F + +T E ++LT +M D
Sbjct: 6 EIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRD 65
Query: 66 SGETL 70
SG L
Sbjct: 66 SGTVL 70
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 73.7 bits (181), Expect = 2e-18
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
+ EL+R KR G LS +I FV V G+A+ +QIGAMLMA+ + G+ EET LT+++
Sbjct: 4 LPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQAL 63
Query: 64 VDSGE 68
SG+
Sbjct: 64 AQSGQ 68
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase
(TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Length = 264
Score = 78.0 bits (191), Expect = 5e-18
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 73 RPEDIVVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPG 129
RP+ D TGG G +S A+CG KV R + L G
Sbjct: 1 RPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFG 60
Query: 130 YQVNCSTADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKV 189
+++ S D + L ++ + A Q G + VR T ++ I +
Sbjct: 61 IRLDMSAEDSRQALDDLNVCFLFAP-QYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARP 119
Query: 190 AEGTKYLV 197
+ +
Sbjct: 120 PKALIGVY 127
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 70
Score = 68.6 bits (168), Expect = 3e-16
Identities = 13/67 (19%), Positives = 32/67 (47%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSM 63
I E+L+K + ++L E + + G + + A+L+A+ + G + E + ++M
Sbjct: 3 INEILKKLINKSDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESKNEIVGFARAM 62
Query: 64 VDSGETL 70
+ +
Sbjct: 63 RELAIKI 69
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase
(TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Length = 69
Score = 66.7 bits (163), Expect = 1e-15
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 6 ELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEETIALTKSMVD 65
+L K ++ E + V G EDSQ+ A L++M + G EE +++
Sbjct: 4 PILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGERPEEIAGAASALLA 63
Query: 66 SGETL 70
+
Sbjct: 64 DAQPF 68
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase
(TrpD) {Thermus thermophilus [TaxId: 274]}
Length = 264
Score = 69.9 bits (170), Expect = 4e-15
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 78 VVDKHSTGGVGDK---VSIPLVPALAACGLKVPMVSGRGLDFSGGTLDKLESIPGYQVNC 134
++D TGG G +S AA G+ V R G+ D LE++
Sbjct: 8 LLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAP 67
Query: 135 STADLKAKLSEVGCFIVGANKQLSPGDQILYRVRDVTATVDNLSLCSASILSKKVAEGT 193
+A + E+G + A P + + VR +L
Sbjct: 68 PERVGEA-IEELGFGFLFARVF-HPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYV 124
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase
(TrpD) {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 44.2 bits (105), Expect = 2e-07
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 5 IELLRKKRSGNELSPGEIAKFVNLTVTGTAEDSQIGAMLMAMFINGLTNEE 55
++ ++K G L E + + + G + +L+A+ + G E
Sbjct: 1 MDAVKKAILGEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHE 51
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610
{Pyrococcus furiosus [TaxId: 2261]}
Length = 105
Score = 27.1 bits (60), Expect = 0.84
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 4 IIELLRKKRSGNELSPGEIAKFVNLTVTGTAED 36
IIELL + + SP E+A+ +++ G+ +
Sbjct: 16 IIELLLE----GDYSPSELARILDMRGKGSKKV 44
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 25.9 bits (57), Expect = 5.1
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 70 LSWRPEDIVVDKHSTGG-VGDKVSIPLVPALAACGLKVP 107
L + ++ H GG VGD V IP+ + G K P
Sbjct: 85 LKIQA---IMSFHQCGGNVGDAVFIPIPQWILQIGDKNP 120
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458
{Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 85
Score = 24.3 bits (53), Expect = 5.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 4 IIELLRKKRSGNELSPGEIAK 24
I LL + + P ++A+
Sbjct: 12 IRALLDARADSASICPSDVAR 32
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 25.2 bits (55), Expect = 7.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 70 LSWRPEDIVVDKHSTGG-VGDKVSIPL 95
L + ++ H GG VGD V+IP+
Sbjct: 78 LKLQA---IMSFHQCGGNVGDAVNIPI 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.368
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,688
Number of extensions: 32787
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 17
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)