BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13300
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/320 (60%), Positives = 231/320 (72%), Gaps = 54/320 (16%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
MN LL+NVLKMIKKNIGN+NAPWMTRIAAYTQQIIIN+SEELLKDPFLPLAERVKKRT+N
Sbjct: 3418 MNPLLRNVLKMIKKNIGNDNAPWMTRIAAYTQQIIINTSEELLKDPFLPLAERVKKRTEN 3477
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ HKE+S+RGF+KS+ DDTSQ+E+Q+QEDW LLVRDIY+FYPLLIKYVDLQ+ HWL++NI
Sbjct: 3478 MLHKEDSMRGFIKSATDDTSQVETQLQEDWNLLVRDIYSFYPLLIKYVDLQRNHWLKDNI 3537
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
PEAE +YN+V+EIFNIWSKSQYFL+EEQNFISANEIDNM LIMPTATRRSA+ + G
Sbjct: 3538 PEAEELYNHVAEIFNIWSKSQYFLKEEQNFISANEIDNMALIMPTATRRSAISEGAPAVG 3597
Query: 181 G---------------------------------VG-----GK------------MKKMP 190
G VG G+ +KKMP
Sbjct: 3598 GKVKKKKKNRDKKRDKDKEVQASLMVACLKRLLPVGLNLFAGREQELVQHCKDRYLKKMP 3657
Query: 191 EYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVV----PHAGQTPVKPPT 246
EY+++EF + QLTLPDK+DP+DEMSWQHYLYSKLG ++ + +
Sbjct: 3658 EYDVIEFARNQLTLPDKLDPSDEMSWQHYLYSKLGKTEEPVDEQALEKANVNSNEKGKDK 3717
Query: 247 VDDVVERIVAMAKVLFGLHM 266
+ V+RIVAMAKVLFGLHM
Sbjct: 3718 TQETVDRIVAMAKVLFGLHM 3737
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 267 KMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVV----PHAGQTPVK 322
KMPEY+++EF + QLTLPDK+DP+DEMSWQHYLYSKLG ++ + +
Sbjct: 3655 KMPEYDVIEFARNQLTLPDKLDPSDEMSWQHYLYSKLGKTEEPVDEQALEKANVNSNEKG 3714
Query: 323 PPTVDDVVERIVAMAKVLFGLHM 345
+ V+RIVAMAKVLFGLHM
Sbjct: 3715 KDKTQETVDRIVAMAKVLFGLHM 3737
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3
Length = 4967
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 170/346 (49%), Gaps = 60/346 (17%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
MN LL N+LK+I N+G + WM R+A ++Q II +LLK FLPL E++KK+
Sbjct: 3273 MNTLLGNILKIIYNNLGIDEGAWMKRLAVFSQPIINKVKPQLLKTHFLPLMEKLKKKAAT 3332
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +E+ L+ + D S+ E I +++ L RD+YAFYPLLI++VD + WL+
Sbjct: 3333 VVSEEDHLKA---EARGDMSEAELLILDEFTTLARDLYAFYPLLIRFVDYNRAKWLKEPN 3389
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNM-ILIMPTATRRS-AVVSDSSV 178
PEAE ++ V+E+F WSKS F REEQNF+ NEI+NM LI T ++ S A VSD
Sbjct: 3390 PEAEELFRMVAEVFIYWSKSHNFKREEQNFVVQNEINNMSFLITDTKSKMSKAAVSDQER 3449
Query: 179 AGGVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAG 238
KMK+ D S Q L V
Sbjct: 3450 K-----KMKR---------------------KGDRYSMQTSLI-----------VAALKR 3472
Query: 239 QTPVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKI-DPADEMSWQH 297
P+ + ++A+AK F L K E E+ + +++ + L K+ DPA + WQ
Sbjct: 3473 LLPIGLNICAPGDQELIALAKNRFSL--KDTEDEVRDIIRSNIHLQGKLEDPA--IRWQM 3528
Query: 298 YLYSKLGNKKDSTEVVPHAGQTPVKPPTVDDVVERIVAMAKVLFGL 343
LY L N+ D T P K VER++ +A VLF L
Sbjct: 3529 ALYKDLPNRTDDT-------SDPEK------TVERVLDIANVLFHL 3561
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1
Length = 4966
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 169/346 (48%), Gaps = 60/346 (17%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
MN LL N+LK+I N+G + WM R+A ++Q II +LLK FLPL E++KK+
Sbjct: 3272 MNTLLGNILKIIYNNLGIDEGAWMKRLAVFSQPIINKVKPQLLKTHFLPLMEKLKKKAAM 3331
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +E+ L+ + D S+ E I +++ L RD+YAFYPLLI++VD + WL+
Sbjct: 3332 VVSEEDHLKA---EARGDMSEAELLILDEFTTLARDLYAFYPLLIRFVDYNRAKWLKEPN 3388
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNM-ILIMPTATRRS-AVVSDSSV 178
PEAE ++ V+E+F WSKS F REEQNF+ NEI+NM LI T ++ S A +SD
Sbjct: 3389 PEAEELFRMVAEVFIYWSKSHNFKREEQNFVVQNEINNMSFLITDTKSKMSKAAISDQER 3448
Query: 179 AGGVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAG 238
KMK+ D S Q L V
Sbjct: 3449 K-----KMKR---------------------KGDRYSMQTSLI-----------VAALKR 3471
Query: 239 QTPVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKI-DPADEMSWQH 297
P+ + ++A+AK F L K E E+ + +++ + L K+ DPA + WQ
Sbjct: 3472 LLPIGLNICAPGDQELIALAKNRFSL--KDTEEEVRDIIRSNIHLQGKLEDPA--IRWQM 3527
Query: 298 YLYSKLGNKKDSTEVVPHAGQTPVKPPTVDDVVERIVAMAKVLFGL 343
LY L N+ + P + VER++ +A VLF L
Sbjct: 3528 ALYKDLPNRTED-------------PSDPERTVERVLGIANVLFHL 3560
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus GN=RYR2 PE=1 SV=3
Length = 4969
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 169/346 (48%), Gaps = 60/346 (17%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
MN LL N+LK+I N+G + WM R+A ++Q II +LLK FLPL E++KK+
Sbjct: 3274 MNTLLGNILKIIYNNLGIDEGAWMKRLAVFSQPIINKVKPQLLKTHFLPLMEKLKKKAAM 3333
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +E+ L+ + D S+ E I +++ L RD+YAFYPLLI++VD + WL+
Sbjct: 3334 VVSEEDHLKA---EARGDMSEAELLILDEFTTLARDLYAFYPLLIRFVDYNRAKWLKEPT 3390
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNM-ILIMPTATRRS-AVVSDSSV 178
PEAE ++ V+E+F WSKS F REEQNF+ NEI+NM LI T ++ S A VSD
Sbjct: 3391 PEAEELFRMVAEVFIYWSKSHNFKREEQNFVVQNEINNMSFLITDTKSKMSKAAVSDQER 3450
Query: 179 AGGVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAG 238
KMK+ D S Q L V
Sbjct: 3451 K-----KMKR---------------------KGDRYSMQTSLI-----------VAALKR 3473
Query: 239 QTPVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKI-DPADEMSWQH 297
P+ + ++A+AK F L K E E+ + ++ + L K+ DPA + WQ
Sbjct: 3474 LLPIGLNICAPGDQELIALAKNRFSL--KATEDEVRDIIRNNIHLQGKLEDPA--IRWQM 3529
Query: 298 YLYSKLGNKKDSTEVVPHAGQTPVKPPTVDDVVERIVAMAKVLFGL 343
LY L N+ + T P K VER++ +A VLF L
Sbjct: 3530 ALYKDLPNRTEET-------SDPEK------TVERVLDIANVLFHL 3562
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2
Length = 4953
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 169/346 (48%), Gaps = 60/346 (17%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
MN LL N+LK+I N+G + WM R+A ++Q II +LLK FLPL E++KK+
Sbjct: 3263 MNTLLGNILKIIYNNLGIDEGAWMKRLAVFSQPIINKVKPQLLKTHFLPLMEKLKKKAAM 3322
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +E+ L+ + D S+ E I +++ L RD+YAFYPLLI++VD + WL+
Sbjct: 3323 VVSEEDHLKA---EARGDMSEAELLILDEFTTLARDLYAFYPLLIRFVDYNRAKWLKEPN 3379
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNM-ILIMPTATRRS-AVVSDSSV 178
PEAE ++ V+E+F WSKS F REEQNF+ NEI+NM LI T ++ S A +SD
Sbjct: 3380 PEAEELFRMVAEVFIYWSKSHNFKREEQNFVVQNEINNMSFLITDTKSKMSKAAISDQER 3439
Query: 179 AGGVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAG 238
KMK+ D S Q L V
Sbjct: 3440 K-----KMKR---------------------KGDRYSMQTSLI-----------VAALKR 3462
Query: 239 QTPVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKI-DPADEMSWQH 297
P+ + ++A+AK F L K E E+ + +++ + L K+ DPA + WQ
Sbjct: 3463 LLPIGLNICAPGDQELIALAKNRFSL--KDTEEEVRDVIRSNIHLQGKLEDPA--IRWQM 3518
Query: 298 YLYSKLGNKKDSTEVVPHAGQTPVKPPTVDDVVERIVAMAKVLFGL 343
LY L N+ + T + VER++ +A VLF L
Sbjct: 3519 ALYKDLPNRAEDTS-------------DPERTVERVLDIANVLFHL 3551
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1
Length = 5035
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 36/310 (11%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
+N LL N+L++I N+G + A WM R+A + Q I+ + ELL+ F+P R++KR
Sbjct: 3313 LNSLLGNILRIIVNNLGIDEASWMKRLAVFAQPIVSRARPELLRSHFIPTIGRLRKRAGK 3372
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +EE LR K+ ++ + +++++ +L RD+YA YPLLI+YVD + HWL
Sbjct: 3373 VVAEEEQLRLEAKAEAEEGELL---VRDEFSVLCRDLYALYPLLIRYVDNNRAHWLTEPN 3429
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
P AE ++ V EIF WSKS F REEQNF+ NEI+NM + + A D G
Sbjct: 3430 PNAEELFRMVGEIFIYWSKSHNFKREEQNFVVQNEINNMSFLTADNKSKMAKAGDVQSGG 3489
Query: 181 GVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQT 240
+ KK D S Q L K ++P G
Sbjct: 3490 SDQERTKKKRR-------------------GDRYSVQTSLIVATLKK-----MLP-IGLN 3524
Query: 241 PVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLY 300
P D ++ +AK + L K + E+ EF++ L L K++ + + WQ LY
Sbjct: 3525 MCAPTDQD-----LIVLAKARYAL--KDTDEEVREFLQNNLNLQGKVEGSPSLRWQMALY 3577
Query: 301 SKL-GNKKDS 309
+ G ++D+
Sbjct: 3578 RGVPGREEDA 3587
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3
Length = 5038
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 149/310 (48%), Gaps = 36/310 (11%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
+N LL N+L++I N+G + A WM R+A + Q I+ + ELL+ F+P R++KR
Sbjct: 3312 LNSLLGNILRIIVNNLGIDEASWMKRLAVFAQPIVSRARPELLQSHFIPTIGRLRKRAGK 3371
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +EE LR K+ + + E +++++ +L RD+YA YPLLI+YVD + WL
Sbjct: 3372 VVSEEEQLRLEAKA---EAQEGELLVRDEFSVLCRDLYALYPLLIRYVDNNRAQWLTEPN 3428
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
P AE ++ V EIF WSKS F REEQNF+ NEI+NM + + A D G
Sbjct: 3429 PSAEELFRMVGEIFIYWSKSHNFKREEQNFVVQNEINNMSFLTADNKSKMAKAGDIQSGG 3488
Query: 181 GVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQT 240
+ KK D S Q L K ++P G
Sbjct: 3489 SDQERTKKKRR-------------------GDRYSVQTSLIVATLKK-----MLP-IGLN 3523
Query: 241 PVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLY 300
P D ++ +AK + L K + E+ EF+ L L K++ + + WQ LY
Sbjct: 3524 MCAPTDQD-----LITLAKTRYAL--KDTDEEVREFLHNNLHLQGKVEGSPSLRWQMALY 3576
Query: 301 SKL-GNKKDS 309
+ G ++D+
Sbjct: 3577 RGVPGREEDA 3586
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 36/310 (11%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
+N LL N+L++I N+G + A WM R+A + Q I+ + ELL F+P R++KR
Sbjct: 3312 LNSLLGNILRIIVNNLGIDEATWMKRLAVFAQPIVSRARPELLHSHFIPTIGRLRKRAGK 3371
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +EE LR K+ ++ + +++++ +L RD+YA YPLLI+YVD + HWL
Sbjct: 3372 VVAEEEQLRLEAKAEAEEGELL---VRDEFSVLCRDLYALYPLLIRYVDNNRAHWLTEPN 3428
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
AE ++ V EIF WSKS F REEQNF+ NEI+NM + + + A D+ G
Sbjct: 3429 ANAEELFRMVGEIFIYWSKSHNFKREEQNFVVQNEINNMSFLTADSKSKMAKAGDAQSGG 3488
Query: 181 GVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQT 240
+ KK D S Q L K ++P G
Sbjct: 3489 SDQERTKKKRR-------------------GDRYSVQTSLIVATLKK-----MLP-IGLN 3523
Query: 241 PVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLY 300
P D ++ +AK + L K + E+ EF++ L L K++ + + WQ LY
Sbjct: 3524 MCAPTDQD-----LIMLAKTRYAL--KDTDEEVREFLQNNLHLQGKVEGSPSLRWQMALY 3576
Query: 301 SKL-GNKKDS 309
L G ++D+
Sbjct: 3577 RGLPGREEDA 3586
>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2
Length = 5035
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 41/310 (13%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
+N LL N+L++I N+G + A WM R+A + Q I+ + ELL F+P R++KR
Sbjct: 3313 LNSLLGNILRIIVNNLGIDEASWMKRLAVFAQPIVSRARPELLHSHFIPTIGRLRKRAGK 3372
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +EE LR K+ ++ + +++++ +L RD+YA YPLLI+YVD + HWL
Sbjct: 3373 VVAEEEQLRLEAKAEAEEGELL---VRDEFSVLCRDLYALYPLLIRYVDNNRAHWLTEPN 3429
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
P AE ++ V EIF WSKS F REEQNF+ NEI+NM + TA +S + +G
Sbjct: 3430 PSAEELFRMVGEIFIYWSKSHNFKREEQNFVVQNEINNMSFL--TADNKSKMAK----SG 3483
Query: 181 GVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQT 240
G + K K +L D S Q L V
Sbjct: 3484 GSDQERTK----------KKRL--------GDRYSVQTSLI-----------VATLKKML 3514
Query: 241 PVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLY 300
P+ + ++ +AK + L K + E+ EF++ L L K++ + + WQ LY
Sbjct: 3515 PIGLNMCAPTDQELITLAKTRYAL--KDTDEEVREFLQNNLHLQGKVEGSPSLRWQMALY 3572
Query: 301 SKL-GNKKDS 309
L G ++D+
Sbjct: 3573 RGLPGREEDA 3582
>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus GN=Ryr3 PE=1 SV=1
Length = 4863
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 121/202 (59%), Gaps = 9/202 (4%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
++ +L N+LK+I N+G + A WM RIA Y Q II + +LL+ F+P E++KK+
Sbjct: 3167 LSLILGNILKIINNNLGIDEASWMKRIAVYAQPIISKARPDLLRSHFIPTLEKLKKKAVK 3226
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+EE L+ DT + E I +++ +L RD+YAFYP+LI+YVD +++WL++
Sbjct: 3227 TVQEEEQLK---TDGKGDTQEAELLILDEFAVLCRDLYAFYPMLIRYVDNNRSNWLKSPD 3283
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAG 180
P+++ ++ V+E+F +W KS F REEQNF+ NEI+N+ + T +S + S +G
Sbjct: 3284 PDSDQLFRMVAEVFILWCKSHNFKREEQNFVIQNEINNLAFL--TGDSKSKM----SKSG 3337
Query: 181 GVGGKMKKMPEYEIMEFVKTQL 202
G + KK + ++T L
Sbjct: 3338 GQDQERKKTKRRGDLYSIQTSL 3359
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 3/162 (1%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
++ +L N+LK+I N+G + A WM RIA Y Q II + +LL+ F+P E++KK+
Sbjct: 3169 LSLILGNILKIINNNLGIDEASWMKRIAVYAQPIISKARPDLLRSHFIPTLEKLKKKAVK 3228
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+EE L+ K DT + E I +++ +L RD+YAFYP+LI+YVD +++WL++
Sbjct: 3229 TVQEEEQLKADGKG---DTQEAELLILDEFAVLCRDLYAFYPMLIRYVDNNRSNWLKSPD 3285
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILI 162
+++ ++ V+E+F +W KS F REEQNF+ NEI+N+ +
Sbjct: 3286 ADSDQLFRMVAEVFILWCKSHNFKREEQNFVIQNEINNLAFL 3327
>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1
Length = 4872
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 105/162 (64%), Gaps = 3/162 (1%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
++ +L N+LK+I N+G + A WM RIA Y Q II + +LL+ F+P E++KK+
Sbjct: 3172 LSLILGNILKIINNNLGIDEASWMKRIAVYAQPIISKARPDLLRSHFIPTLEKLKKKAVK 3231
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+EE L+ K DT + E I +++ +L RD+YAFYP+LI+YVD +++WL++
Sbjct: 3232 TVQEEEQLKADGKG---DTQEAELLILDEFAILCRDLYAFYPMLIRYVDNNRSNWLKSPD 3288
Query: 121 PEAELIYNYVSEIFNIWSKSQYFLREEQNFISANEIDNMILI 162
+++ ++ V+E+F +W KS F REEQNF+ NEI+N+ +
Sbjct: 3289 GDSDQLFRMVAEVFILWCKSHNFKREEQNFVIQNEINNLAFL 3330
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1
Length = 5035
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 36/311 (11%)
Query: 1 MNQLLKNVLKMIKKNIGNENAPWMTRIAAYTQQIIINSSEELLKDPFLPLAERVKKRTDN 60
+N LL N+L++I N+G + A WM R+A + Q I+ + ELL+ F+P R++KR
Sbjct: 3309 LNSLLGNILRIIVNNLGIDEASWMKRLAVFAQPIVSRARPELLRSHFIPTIGRLRKRAGK 3368
Query: 61 LFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNI 120
+ +EE LR K+ ++ + +++++ +L RD+YA YPLLI+YVD ++ W R
Sbjct: 3369 VVAEEEQLRLEAKAEAEEGELL---VRDEFSVLCRDLYALYPLLIRYVDNNRSAWPRLPP 3425
Query: 121 PEAELIYNYVSEIFNIW-SKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVA 179
+ W K E++F +DN P A +S + + V
Sbjct: 3426 SPSSSFSLPSPSELGRWLMKDHGHQLYEESFTVPLILDNAAF--PLARNQSRAIGCAGVV 3483
Query: 180 GGVGGKMKKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQ 239
G ++ K D S Q L K ++P G
Sbjct: 3484 RSGGSDQERT----------------KKKRRGDRYSVQTSLIVATLKK-----MLP-IGL 3521
Query: 240 TPVKPPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYL 299
P D ++ +AK + L K + E+ EF++ L L K++ + + WQ L
Sbjct: 3522 NMCAPTDQD-----LIVLAKARYAL--KDTDEEVREFLQNNLNLQGKVEGSPSLRWQMAL 3574
Query: 300 YSKL-GNKKDS 309
Y + G ++D+
Sbjct: 3575 YRGVPGREEDA 3585
>sp|Q7Z3U7|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2
Length = 1718
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 86 IQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNIPEAELIYNYVSEIFNIWSKS----Q 141
I++ + LLV + F LL+K++D K WLR E+ + ++ + +S Q
Sbjct: 321 IKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRFCVQPQLLRSFCQSYDMKQ 380
Query: 142 YFLREEQNFISA--NEIDNMILIMPT---ATRRSA-------VVSDSSVAG--GVGGKMK 187
+ + ++ ++A + I ++ L+ PT AT A VS + +G G+GG +
Sbjct: 381 HSTKVFRDIVNALGSFIQSLFLVPPTGNPATSNQAGNNNLGGSVSAPANSGMVGIGGGVT 440
Query: 188 KMPEYE 193
+P +E
Sbjct: 441 LLPAFE 446
>sp|Q80TL7|MON2_MOUSE Protein MON2 homolog OS=Mus musculus GN=Mon2 PE=2 SV=2
Length = 1715
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 86 IQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNIPEA--------ELIYNYVSEIFNIW 137
I++ + LLV + F LL+K++D K WLR E+ +L+ ++ + +++
Sbjct: 320 IKQFYSLLVTECEIFLSLLVKFLDSDKPQWLRAVAVESIHRLCVQPQLLRSFC-QSYDMK 378
Query: 138 SKSQYFLREEQNFISANEIDNMILIMPTATRRSAVVSDSSVAGG 181
S R+ N + + I ++ L+ PT +A + ++ AGG
Sbjct: 379 QHSTKVFRDIVNAL-GSFIQSLFLVPPTGNPATANQAGNNNAGG 421
>sp|Q02T87|RPOB_PSEAB DNA-directed RNA polymerase subunit beta OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=rpoB PE=3 SV=1
Length = 1357
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 194 IMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDST-----EVVPH-AGQTPVKPPTV 247
+++ VK L + +I P D+M+ +H GNK + E +PH A TP V
Sbjct: 1063 VLKIVKVYLAIKRRIQPGDKMAGRH------GNKGVVSVIMPVEDMPHDANGTP-----V 1111
Query: 248 DDVVERIVAMAKVLFG----LHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKL 303
D V+ + +++ G H+ + + E + L K+ A+ + H +Y+++
Sbjct: 1112 DIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKV--AELRKFLHEIYNEI 1169
Query: 304 GNKKDS------TEVVPHA----GQTPVKPPTVDDVVER-IVAMAKV 339
G ++++ E++ A G P+ P D ER I AM K+
Sbjct: 1170 GGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKL 1216
>sp|B7V637|RPOB_PSEA8 DNA-directed RNA polymerase subunit beta OS=Pseudomonas aeruginosa
(strain LESB58) GN=rpoB PE=3 SV=1
Length = 1357
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 194 IMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDST-----EVVPH-AGQTPVKPPTV 247
+++ VK L + +I P D+M+ +H GNK + E +PH A TP V
Sbjct: 1063 VLKIVKVYLAIKRRIQPGDKMAGRH------GNKGVVSVIMPVEDMPHDANGTP-----V 1111
Query: 248 DDVVERIVAMAKVLFG----LHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKL 303
D V+ + +++ G H+ + + E + L K+ A+ + H +Y+++
Sbjct: 1112 DIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKV--AELRKFLHEIYNEI 1169
Query: 304 GNKKDS------TEVVPHA----GQTPVKPPTVDDVVER-IVAMAKV 339
G ++++ E++ A G P+ P D ER I AM K+
Sbjct: 1170 GGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKL 1216
>sp|A6UZI1|RPOB_PSEA7 DNA-directed RNA polymerase subunit beta OS=Pseudomonas aeruginosa
(strain PA7) GN=rpoB PE=3 SV=1
Length = 1357
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 194 IMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDST-----EVVPH-AGQTPVKPPTV 247
+++ VK L + +I P D+M+ +H GNK + E +PH A TP V
Sbjct: 1063 VLKIVKVYLAIKRRIQPGDKMAGRH------GNKGVVSVIMPVEDMPHDANGTP-----V 1111
Query: 248 DDVVERIVAMAKVLFG----LHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKL 303
D V+ + +++ G H+ + + E + L K+ A+ + H +Y+++
Sbjct: 1112 DIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKV--AELRKFLHEIYNEI 1169
Query: 304 GNKKDS------TEVVPHA----GQTPVKPPTVDDVVER-IVAMAKV 339
G ++++ E++ A G P+ P D ER I AM K+
Sbjct: 1170 GGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKL 1216
>sp|Q51561|RPOB_PSEAE DNA-directed RNA polymerase subunit beta OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=rpoB PE=3 SV=2
Length = 1357
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 194 IMEFVKTQLTLPDKIDPADEMSWQHYLYSKLGNKKDST-----EVVPH-AGQTPVKPPTV 247
+++ VK L + +I P D+M+ +H GNK + E +PH A TP V
Sbjct: 1063 VLKIVKVYLAIKRRIQPGDKMAGRH------GNKGVVSVIMPVEDMPHDANGTP-----V 1111
Query: 248 DDVVERIVAMAKVLFG----LHMKMPEYEIMEFVKTQLTLPDKIDPADEMSWQHYLYSKL 303
D V+ + +++ G H+ + + E + L K+ A+ + H +Y+++
Sbjct: 1112 DIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKV--AELRKFLHEIYNEI 1169
Query: 304 GNKKDS------TEVVPHA----GQTPVKPPTVDDVVER-IVAMAKV 339
G ++++ E++ A G P+ P D ER I AM K+
Sbjct: 1170 GGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKL 1216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,843,929
Number of Sequences: 539616
Number of extensions: 5475802
Number of successful extensions: 14736
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 14682
Number of HSP's gapped (non-prelim): 48
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)