Query psy13300
Match_columns 346
No_of_seqs 114 out of 134
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 15:58:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ezv_A Type II restriction enz 28.3 33 0.0011 31.8 2.9 41 84-124 51-94 (269)
2 3sjr_A Uncharacterized protein 26.6 42 0.0014 29.8 3.1 35 244-278 87-121 (175)
3 1wzd_A Heme oxygenase; electro 18.4 79 0.0027 27.8 3.3 45 48-101 6-53 (215)
4 3sjr_A Uncharacterized protein 17.9 77 0.0026 28.1 2.9 24 322-345 86-109 (175)
5 1j77_A HEMO, heme oxygenase; p 16.8 1.3E+02 0.0044 26.5 4.3 48 49-105 10-57 (209)
6 3pbp_A Nucleoporin NUP82; beta 14.6 27 0.00092 35.3 -0.9 11 96-106 204-214 (452)
7 3c01_E Surface presentation of 14.5 86 0.0029 25.2 2.2 14 123-136 64-77 (98)
8 3t7y_A YOP proteins translocat 14.3 88 0.003 25.1 2.2 14 123-136 79-92 (97)
9 1wmh_B Partitioning defective- 13.3 76 0.0026 25.1 1.6 34 86-120 29-64 (86)
10 1sk7_A Hypothetical protein PA 12.8 1.5E+02 0.005 25.8 3.5 51 49-108 13-63 (198)
No 1
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease, protein/DNA complex, hydrolase/DNA complex; 2.40A {Synthetic} PDB: 2f03_A*
Probab=28.33 E-value=33 Score=31.76 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHhhhhhhhccccc---cccchhhhhcccCChhHH
Q psy13300 84 SQIQEDWQLLVRDIYAFYPLLIK---YVDLQKTHWLRNNIPEAE 124 (346)
Q Consensus 84 ~~i~e~~~~L~RDlYAfyPlLik---yvD~~Ra~WLk~p~~eae 124 (346)
..|.||-+.-+=|.--.||+=+| ++|+-||+||-.|.....
T Consensus 51 ~diaEDITreALd~lg~~rI~~Rl~GkIDYKra~~lf~Pd~~~~ 94 (269)
T 2ezv_A 51 IVLAEDITQYALEVAETYPINRRFAGFIDYKRVRWLPSPHGLLP 94 (269)
T ss_dssp HHHHHHHHHHHHTTSCCSBCSCCCCSSCSEEEEEEECCTTCCEE
T ss_pred HHHHHHHHHHHHHHhCCCchhhhhhcccccceEEEEEcCcccce
Confidence 45778888878788888998665 699999999999976543
No 2
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=26.61 E-value=42 Score=29.79 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Q psy13300 244 PPTVDDVVERIVAMAKVLFGLHMKMPEYEIMEFVK 278 (346)
Q Consensus 244 ~~~~e~~VeRIl~mAkVLF~L~q~EHP~k~rk~i~ 278 (346)
..++|.|.+||+.+|..+|.+++--||...-+-+.
T Consensus 87 ~~t~eaTA~RIVsfaT~FF~~yq~qhPd~~~ee~L 121 (175)
T 3sjr_A 87 ELTGDSHSQHLLLGMEILMELYRQQHPDWTAPAIR 121 (175)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHTCSSSCHHHHH
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 35678999999999999999999888876544443
No 3
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=18.38 E-value=79 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHHhhhhhh---cccccCCCCchhhhhHHHHHhHHHHHhhhhhhh
Q psy13300 48 LPLAERVKKRTDNLFHKEESL---RGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFY 101 (346)
Q Consensus 48 LP~~ekl~kra~~~~~eEE~l---r~~~~~~~~d~~e~E~~i~e~~~~L~RDlYAfy 101 (346)
.|+.++||..|.+.-..-|+. +.+ ..+.-+ .+.|..+.+++|.+|
T Consensus 6 ~~l~~~Lr~~T~~~H~~~e~~~~v~~l-~~g~~~--------~~~Y~~~L~~~y~vy 53 (215)
T 1wzd_A 6 AGLAVELKQSTAQAHEKAEHSTFMSDL-LKGRLG--------VAEFTRLQEQAWLFY 53 (215)
T ss_dssp -CHHHHHHHHTHHHHHHHHTCHHHHHH-HTTCSC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHH-HcCCCC--------HHHHHHHHHHHHHHH
Confidence 378999999999888777753 221 112111 367888888888888
No 4
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=17.86 E-value=77 Score=28.12 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcC
Q psy13300 322 KPPTVDDVVERIVAMAKVLFGLHM 345 (346)
Q Consensus 322 ~~~~~e~~VerI~~ma~Vl~~L~~ 345 (346)
...++|.+.+||+.+|.-+|.+|+
T Consensus 86 ~~~t~eaTA~RIVsfaT~FF~~yq 109 (175)
T 3sjr_A 86 SELTGDSHSQHLLLGMEILMELYR 109 (175)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhHHHHHHHHHHHHHHHH
Confidence 346778999999999999999874
No 5
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=16.76 E-value=1.3e+02 Score=26.49 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccCCCCchhhhhHHHHHhHHHHHhhhhhhhcccc
Q psy13300 49 PLAERVKKRTDNLFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLI 105 (346)
Q Consensus 49 P~~ekl~kra~~~~~eEE~lr~~~~~~~~d~~e~E~~i~e~~~~L~RDlYAfyPlLi 105 (346)
++.++||..|...-..=|.. +.. ..+..+ .+.|..+.+.+|.+|.-|-
T Consensus 10 ~l~~~Lr~~T~~~H~~~E~~--~~~-~~g~~~------~~~Y~~~L~~~y~~y~~lE 57 (209)
T 1j77_A 10 TFAKRLKADTTAVHDSVDNL--VMS-VQPFVS------KENYIKFLKLQSVFHKAVD 57 (209)
T ss_dssp SHHHHHHHHHHHHHHHHHHH--HHH-TCTTSC------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh--HHh-ccCCCC------HHHHHHHHHHHHHHHHHHH
Confidence 68999999998876665555 212 223322 4789999999999995443
No 6
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=14.61 E-value=27 Score=35.31 Aligned_cols=11 Identities=64% Similarity=1.274 Sum_probs=10.4
Q ss_pred hhhhhhccccc
Q psy13300 96 DIYAFYPLLIK 106 (346)
Q Consensus 96 DlYAfyPlLik 106 (346)
|+||+||+|-+
T Consensus 204 DIYAlcP~LP~ 214 (452)
T 3pbp_A 204 DIFAFYPFLPS 214 (452)
T ss_dssp EEEEESSCCCS
T ss_pred CEEEECCCCcc
Confidence 99999999986
No 7
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=14.48 E-value=86 Score=25.19 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q psy13300 123 AELIYNYVSEIFNI 136 (346)
Q Consensus 123 ae~Lf~~VaeIF~~ 136 (346)
-++||+-||+|+.+
T Consensus 64 P~ely~aVAeiLa~ 77 (98)
T 3c01_E 64 SLEEIDEVLRLLVW 77 (98)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 47999999999975
No 8
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=14.25 E-value=88 Score=25.08 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy13300 123 AELIYNYVSEIFNI 136 (346)
Q Consensus 123 ae~Lf~~VaeIF~~ 136 (346)
-++||.-||+|+.+
T Consensus 79 P~ely~aVAeiLa~ 92 (97)
T 3t7y_A 79 PETTYEAVGEILLY 92 (97)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 37999999999974
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=13.32 E-value=76 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHHhHHHHHhhhhhhh--ccccccccchhhhhcccCC
Q psy13300 86 IQEDWQLLVRDIYAFY--PLLIKYVDLQKTHWLRNNI 120 (346)
Q Consensus 86 i~e~~~~L~RDlYAfy--PlLikyvD~~Ra~WLk~p~ 120 (346)
--|+|..+++.++-+. |.+|.|+|-+ ..+|.=+|
T Consensus 29 ~fe~f~~lv~~lh~L~~~~f~i~Y~D~d-GDLlpInn 64 (86)
T 1wmh_B 29 GFQEFSRLLRAVHQIPGLDVLLGYTDAH-GDLLPLTN 64 (86)
T ss_dssp CHHHHHHHHHHHTTCTTCCCEEEEECTT-SCEEECCS
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEEECCC-CCEeeecC
Confidence 3478999999999988 8999999954 66665444
No 10
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=12.82 E-value=1.5e+02 Score=25.81 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccCCCCchhhhhHHHHHhHHHHHhhhhhhhccccccc
Q psy13300 49 PLAERVKKRTDNLFHKEESLRGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYV 108 (346)
Q Consensus 49 P~~ekl~kra~~~~~eEE~lr~~~~~~~~d~~e~E~~i~e~~~~L~RDlYAfyPlLikyv 108 (346)
++.++||..|...-..=|.. +.. .++..+ .++|..+.+.+|.+|.-|-.-+
T Consensus 13 ~l~~~Lr~~T~~~H~~~e~~--~~~-~~g~~~------~~~Y~~~L~~~y~~y~~lE~~l 63 (198)
T 1sk7_A 13 LRSQRLNLLTNEPHQRLESL--VKS-KEPFAS------RDNFARFVAAQYLFQHDLEPLY 63 (198)
T ss_dssp CHHHHHHHHTHHHHHHHHHH--HHH-HCTTSC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHh-ccCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999988776665555 211 112222 5789999999999996544433
Done!