Query psy13300
Match_columns 346
No_of_seqs 114 out of 134
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 15:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13300.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13300hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wzda1 a.132.1.1 (A:7-213) He 16.5 32 0.0023 27.7 2.4 53 50-111 2-57 (207)
2 g3bzy.1 d.367.1.1 (A:246-262,B 15.5 23 0.0016 26.8 1.0 31 91-136 64-94 (100)
3 d1x58a1 a.4.1.1 (A:8-56) Hypot 15.0 23 0.0017 23.6 0.8 12 141-152 2-13 (49)
4 d1wova1 a.132.1.1 (A:2-250) He 14.1 80 0.0058 26.5 4.5 54 49-111 2-58 (249)
5 g3c01.1 d.367.1.1 (A:239-258,E 12.7 48 0.0035 25.1 2.2 31 91-136 67-97 (108)
6 d1k3ta2 d.81.1.1 (A:165-333) G 12.7 23 0.0016 29.0 0.3 36 3-39 5-43 (169)
7 d1u8fo2 d.81.1.1 (O:152-315) G 9.5 21 0.0015 29.3 -1.1 39 3-42 4-44 (164)
8 d1uj8a1 a.159.5.1 (A:13-76) Ir 9.2 33 0.0024 24.2 0.1 12 101-112 22-33 (64)
9 g2vt1.1 d.367.1.1 (A:237-257,B 9.1 42 0.0031 25.2 0.7 13 124-136 86-98 (102)
10 d1olma1 a.5.3.1 (A:1-75) Super 8.8 1.6E+02 0.012 19.7 3.9 53 77-132 6-58 (75)
No 1
>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=16.48 E-value=32 Score=27.67 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhhhhhh---cccccCCCCchhhhhHHHHHhHHHHHhhhhhhhccccccccch
Q psy13300 50 LAERVKKRTDNLFHKEESL---RGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQ 111 (346)
Q Consensus 50 ~~ekl~kra~~~~~eEE~l---r~~~~~~~~d~~e~E~~i~e~~~~L~RDlYAfyPlLikyvD~~ 111 (346)
++.+||+.|..+-.+=|+. +.. . .+..+ .++|..+.+.+|.||.-|=.-++.+
T Consensus 2 l~~~Lr~~T~~~H~~~E~~~~~~~l-~--~g~~~------~~~Y~~~L~~~y~~y~~lE~~l~~~ 57 (207)
T d1wzda1 2 LAVELKQSTAQAHEKAEHSTFMSDL-L--KGRLG------VAEFTRLQEQAWLFYTALEQAVDAV 57 (207)
T ss_dssp HHHHHHHHTHHHHHHHHTCHHHHHH-H--TTCSC------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHH-H--cCCCC------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999887776654 211 1 12222 4789999999999987664444333
No 2
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=15.49 E-value=23 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHhhhhhhhccccccccchhhhhcccCChhHHHHHHHHHHHHHH
Q psy13300 91 QLLVRDIYAFYPLLIKYVDLQKTHWLRNNIPEAELIYNYVSEIFNI 136 (346)
Q Consensus 91 ~~L~RDlYAfyPlLikyvD~~Ra~WLk~p~~eae~Lf~~VaeIF~~ 136 (346)
-.|+|.||+-.++- +.. -++||+.||+|+.+
T Consensus 64 ~~LAr~Ly~~~~ig-------------~~I--P~ely~aVAeIL~~ 94 (100)
T g3bzy.1 64 IPLARSLDKNIHKG-------------QYI--TEDFFEPVAQLIRI 94 (100)
T ss_dssp HHHHHHHHHHCCTT-------------CBC--CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-------------Ccc--CHHHHHHHHHHHHH
Confidence 45677777654432 222 37999999999764
No 3
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.02 E-value=23 Score=23.60 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.3
Q ss_pred cchhhhhhhhhh
Q psy13300 141 QYFLREEQNFIS 152 (346)
Q Consensus 141 ~nFkREEqNfvv 152 (346)
+||-+||.||..
T Consensus 2 knft~eEv~YL~ 13 (49)
T d1x58a1 2 KDFTKEEVNYLF 13 (49)
T ss_dssp SSCCHHHHHHHH
T ss_pred CcccHHHHHHHH
Confidence 689999999973
No 4
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=14.14 E-value=80 Score=26.52 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHhhhhhh---cccccCCCCchhhhhHHHHHhHHHHHhhhhhhhccccccccch
Q psy13300 49 PLAERVKKRTDNLFHKEESL---RGFLKSSVDDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQ 111 (346)
Q Consensus 49 P~~ekl~kra~~~~~eEE~l---r~~~~~~~~d~~e~E~~i~e~~~~L~RDlYAfyPlLikyvD~~ 111 (346)
+++++||..|...-.+=|+. +.+ ..+.-+ .+.|..+.+.+|.+|+.|=.-++.+
T Consensus 2 ~ls~~Lre~T~~~H~~aE~~~f~~~l-~~g~~s--------~~~Y~~~L~~~y~vY~~LE~~~~~~ 58 (249)
T d1wova1 2 NLAQKLRYGTQQSHTLAENTAYMKCF-LKGIVE--------REPFRQLLANLYYLYSALEAALRQH 58 (249)
T ss_dssp CHHHHHHHHTHHHHHHHHTSHHHHHH-HHTCCC--------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHccHHHHHH-HcCCCC--------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999877766653 322 112111 4679999999999999986555543
No 5
>g3c01.1 d.367.1.1 (A:239-258,E:259-346) Surface presentation of antigens protein SpaS {Salmonella typhimurium [TaxId: 90371]}
Probab=12.74 E-value=48 Score=25.13 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=20.8
Q ss_pred HHHHhhhhhhhccccccccchhhhhcccCChhHHHHHHHHHHHHHH
Q psy13300 91 QLLVRDIYAFYPLLIKYVDLQKTHWLRNNIPEAELIYNYVSEIFNI 136 (346)
Q Consensus 91 ~~L~RDlYAfyPlLikyvD~~Ra~WLk~p~~eae~Lf~~VaeIF~~ 136 (346)
--|+|-||.-+.+- +..| ++||+.||+|+.+
T Consensus 67 ~~LAr~L~~~~~ig-------------~~IP--~ely~aVA~IL~~ 97 (108)
T g3c01.1 67 IKLARSLFKTHRRY-------------DLVS--LEEIDEVLRLLVW 97 (108)
T ss_dssp HHHHHHHHHHCCTT-------------CBCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-------------CcCC--HHHHHHHHHHHHH
Confidence 34677777654432 2233 7999999999864
No 6
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Probab=12.73 E-value=23 Score=29.00 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=29.2
Q ss_pred hHHHHHHHH-hhhcCCCCCchhhHHHhhhh--hhhcccCc
Q psy13300 3 QLLKNVLKM-IKKNIGNENAPWMTRIAAYT--QQIIINSS 39 (346)
Q Consensus 3 ~llg~iL~i-I~nnlg~~~a~Wm~ria~~~--qpIi~~~~ 39 (346)
++|--++|+ |+.++||++|. |+.|-.|+ ||++-..+
T Consensus 5 NclaP~~kvL~~~~fgI~~g~-mtTvHa~T~~Q~~lD~~~ 43 (169)
T d1k3ta2 5 NCLAPIVHVLVKEGFGVQTGL-MTTIHSYTATQKTVDGVS 43 (169)
T ss_dssp HHHHHHHHHHHHTTCCCSEEE-EEEEEECCTTSBSSSCCC
T ss_pred HHHHHHHHHhhccccceeEEE-EEEeccccCCCccccccc
Confidence 567889997 69999999875 88888787 88888654
No 7
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=9.47 E-value=21 Score=29.34 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhcCCCCCchhhHHHhhhh--hhhcccCcccc
Q psy13300 3 QLLKNVLKMIKKNIGNENAPWMTRIAAYT--QQIIINSSEEL 42 (346)
Q Consensus 3 ~llg~iL~iI~nnlg~~~a~Wm~ria~~~--qpIi~~~~~~l 42 (346)
++|--++++|..++||++| .|+.|-.|+ |+++-..+.+.
T Consensus 4 NclaP~~kvl~~~fgI~~g-~mTTiHayT~~Q~l~D~~~~~~ 44 (164)
T d1u8fo2 4 NCLAPLAKVIHDNFGIVEG-LMTTVHAITATQKTVDGPSGKL 44 (164)
T ss_dssp HHHHHHHHHHHHHHCEEEE-EEEEEEECCTTSBSSSCCCTTC
T ss_pred HHHHHHHHHHHhhcCeeEE-EEEeeecccCccccccccccCc
Confidence 4677899999999999877 477777666 88888765544
No 8
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=9.19 E-value=33 Score=24.20 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=10.2
Q ss_pred hccccccccchh
Q psy13300 101 YPLLIKYVDLQK 112 (346)
Q Consensus 101 yPlLikyvD~~R 112 (346)
=|+-|||||+++
T Consensus 22 DP~~irFtDL~~ 33 (64)
T d1uj8a1 22 DPKTVRFTDMHQ 33 (64)
T ss_dssp CGGGCCHHHHHH
T ss_pred CCCEeehHHHHH
Confidence 478899999986
No 9
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=9.08 E-value=42 Score=25.21 Aligned_cols=13 Identities=8% Similarity=-0.199 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHH
Q psy13300 124 ELIYNYVSEIFNI 136 (346)
Q Consensus 124 e~Lf~~VaeIF~~ 136 (346)
++||+.||+|+.+
T Consensus 86 ~ely~aVAeIL~~ 98 (102)
T g2vt1.1 86 FEHLDEVLRLIVW 98 (102)
T ss_dssp TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999875
No 10
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.75 E-value=1.6e+02 Score=19.73 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=40.1
Q ss_pred CchhhhhHHHHHhHHHHHhhhhhhhccccccccchhhhhcccCChhHHHHHHHHHH
Q psy13300 77 DDTSQIESQIQEDWQLLVRDIYAFYPLLIKYVDLQKTHWLRNNIPEAELIYNYVSE 132 (346)
Q Consensus 77 ~d~~e~E~~i~e~~~~L~RDlYAfyPlLikyvD~~Ra~WLk~p~~eae~Lf~~Vae 132 (346)
|+.++.|....++|.-.+.|.....| .+-|..--+||+...++.+.-+.|.=.
T Consensus 6 gelt~~q~~~l~elr~~l~~~~~~~~---~~dd~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQDVLPALP---NPDDYFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGGGGGGSS---CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhcccCC---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 67777788888888888888654433 466777889999999998887777544
Done!