RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13300
         (346 letters)



>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 166

 Score = 30.4 bits (68), Expect = 0.21
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 263 GLHMKMPEYEIMEFVKTQLTLPD--KIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQTP 320
           G HM + E + +    TQL+LP   +  P DE     YL  K      S +++       
Sbjct: 1   GSHMGIQETDPL----TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYK 56

Query: 321 VKP 323
             P
Sbjct: 57  FDP 59



 Score = 25.7 bits (56), Expect = 7.2
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 200 TQLTLPD--KIDPADEMSWQHYLYSKLGNKKDSTEVVPHAGQTPVKP 244
           TQL+LP   +  P DE     YL  K      S +++         P
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDP 59


>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease,
          domains 2 and 4 {Archaeon Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 78

 Score = 26.2 bits (57), Expect = 1.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 42 LLKDPFLPLAERVKKRTDNLFHKEESLRGFLKSSVDDTSQI 82
          L K P+LP++ER   R + +  K  +      + VD+ S+I
Sbjct: 27 LTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEI 67


>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1
           {Escherichia coli O157:H7 [TaxId: 83334]}
          Length = 186

 Score = 26.5 bits (58), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 243 KPPTVDDVVERIVAMAKVLFGLHMK 267
            P TVDD+V  +VA     FGL   
Sbjct: 154 HPETVDDIVHHVVARVLDQFGLEHP 178



 Score = 26.1 bits (57), Expect = 4.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 322 KPPTVDDVVERIVAMAKVLFGLHM 345
            P TVDD+V  +VA     FGL  
Sbjct: 154 HPETVDDIVHHVVARVLDQFGLEH 177


>d1qaha_ d.79.1.1 (A:) 14.5 kda translational inhibitor protein,
          L-PSP {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 132

 Score = 25.5 bits (55), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 10 KMIKKNIGNENAPWMTRIAAYTQQIIIN 37
           +I+K I    AP    I AY+Q ++++
Sbjct: 2  SIIRKVISTSKAP--AAIGAYSQAVLVD 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,307,784
Number of extensions: 61611
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)