Query psy13301
Match_columns 194
No_of_seqs 114 out of 217
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 15:59:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4l_A ION transport protein; 98.3 5.7E-08 1.9E-12 73.6 -0.2 94 2-106 17-110 (112)
2 3rvy_A ION transport protein; 97.1 9.4E-05 3.2E-09 62.5 0.5 94 2-107 159-253 (285)
3 4dxw_A Navrh, ION transport pr 95.5 0.0021 7.3E-08 52.4 -0.3 84 2-97 144-227 (229)
4 2r9r_B Paddle chimera voltage 88.9 0.24 8.2E-06 45.7 3.3 55 64-120 401-456 (514)
5 3beh_A MLL3241 protein; transm 60.6 8 0.00027 32.8 4.1 107 27-146 161-276 (355)
6 3eff_K Voltage-gated potassium 60.0 34 0.0011 25.3 7.2 63 27-102 40-102 (139)
7 1e7l_A GP49, recombination end 59.5 3.1 0.00011 33.2 1.2 38 94-136 6-43 (157)
8 2a9h_A Voltage-gated potassium 48.5 15 0.00053 28.4 3.6 61 28-101 85-145 (155)
9 4h33_A LMO2059 protein; bilaye 45.0 24 0.00082 26.4 4.1 60 27-99 43-102 (137)
10 3pjs_K KCSA, voltage-gated pot 39.6 25 0.00084 27.1 3.5 68 26-106 66-133 (166)
11 2k1e_A Water soluble analogue 34.9 34 0.0011 24.2 3.4 61 27-100 40-100 (103)
12 3um7_A Potassium channel subfa 34.4 38 0.0013 29.3 4.2 66 29-102 226-292 (309)
13 1dx8_A Rubredoxin; electron tr 32.4 9.6 0.00033 26.3 0.0 22 110-131 42-66 (70)
14 2ih3_C Voltage-gated potassium 29.7 1.2E+02 0.004 22.0 5.7 60 27-99 61-120 (122)
15 3m1d_A Baculoviral IAP repeat- 29.6 12 0.00041 26.4 0.1 28 107-134 45-72 (85)
16 1a6b_B Momulv, zinc finger pro 28.6 13 0.00044 22.9 0.1 10 107-116 9-18 (40)
17 6rxn_A Rubredoxin; electron tr 27.1 13 0.00046 23.5 0.0 14 110-123 32-45 (46)
18 1lnq_A MTHK channels, potassiu 27.0 25 0.00085 29.4 1.7 80 27-119 45-126 (336)
19 2poi_A Baculoviral IAP repeat- 26.7 14 0.00049 26.6 0.1 28 107-134 54-81 (94)
20 1se0_A Apoptosis 1 inhibitor; 25.6 15 0.00052 27.5 0.1 28 107-134 47-74 (116)
21 2qfa_A Baculoviral IAP repeat- 25.4 16 0.00054 28.2 0.1 28 107-134 53-80 (142)
22 2hi2_A Fimbrial protein; type 24.2 91 0.0031 23.3 4.3 30 75-104 6-35 (158)
23 1i4o_C X-linked IAP, baculovir 23.8 23 0.00079 27.5 0.8 28 107-134 77-104 (141)
24 2vm5_A Baculoviral IAP repeat- 23.5 18 0.0006 26.7 0.1 27 108-134 56-82 (106)
25 3sok_A Fimbrial protein; pilus 23.4 88 0.003 23.5 4.1 29 75-103 6-34 (151)
26 1oqw_A Fimbrial protein; type 23.2 91 0.0031 23.0 4.1 28 75-102 6-33 (144)
27 2qra_D XIAP, baculoviral IAP r 22.6 19 0.00066 26.8 0.1 28 107-134 71-98 (111)
28 2w6b_A RHO guanine nucleotide 22.1 47 0.0016 22.0 1.9 20 89-108 8-27 (56)
29 3d9t_A Baculoviral IAP repeat- 21.5 20 0.0007 25.7 0.1 27 108-134 48-74 (97)
30 1jd5_A DIAP1, apoptosis 1 inhi 21.2 21 0.00072 27.1 0.1 29 107-135 59-87 (124)
31 1e8j_A Rubredoxin; iron-sulfur 21.0 23 0.0008 22.8 0.3 14 110-123 38-51 (52)
32 4rxn_A Rubredoxin; electron tr 20.9 20 0.00068 23.5 -0.1 15 110-124 38-52 (54)
33 1g73_C Inhibitors of apoptosis 20.6 22 0.00075 26.8 0.1 27 108-134 60-86 (121)
No 1
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.33 E-value=5.7e-08 Score=73.59 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=49.3
Q ss_pred EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q psy13301 2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVIL 81 (194)
Q Consensus 2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~ 81 (194)
+|+||++|...|.+..+ ..-+++...+++.+.-. ++-|-.+.+..|..... .+-.+|=++|.++...++
T Consensus 17 ~~ifAi~G~~lFg~~~~--------~~F~~~~~s~ltLF~i~--T~e~W~~~~~~~~~~~~-~~a~iyFi~fi~i~~fi~ 85 (112)
T 4f4l_A 17 FYIAAVMATNLYGATFP--------EWFGDLSKSLYTLFQVM--TLESWSMGIVRPVMNVH-PNAWVFFIPFIMLTTFTV 85 (112)
T ss_dssp HHHHHHHHHHHHTTTCH--------HHHSSHHHHHHHHHHHH--TTTTCCCCCHHHHTTTS-TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcc--------ccccCHHHHHHHHHHHH--HccccHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence 58999999999875432 22456666666665322 23344444433322111 233466788889999999
Q ss_pred HHHHHHHhhcchHHhHHHHHHHHHh
Q psy13301 82 LAIIQGLIIDAFGELRDQLESVKED 106 (194)
Q Consensus 82 lnIi~GIIIDtF~eLR~e~~~~~~d 106 (194)
+|++.|+|+|+|++.|+++++.+++
T Consensus 86 lNLfiaVi~~~f~~~~~~~~~~~~~ 110 (112)
T 4f4l_A 86 LNLFIGIIVDAMAITKEQEEEAKTG 110 (112)
T ss_dssp HHHHTTTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888776654
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.09 E-value=9.4e-05 Score=62.53 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=47.1
Q ss_pred EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCccc-ccCCCCCCCCcchhhHhhHHHHHHHHHHH
Q psy13301 2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIG-DEIGDPDGDDYEVYRIIFDITFFFFVIVI 80 (194)
Q Consensus 2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig-~~l~~~~~~~~~~~R~~fDl~ffiiv~ii 80 (194)
+|+||++|+..|.+...+ ..++.-+++|.++.+.- +-|.| |.+.+...... ++. .|=.+|.++..++
T Consensus 159 ~~~fa~~g~~~f~~~~~~----~F~s~~~a~~~~~~~~T------~~g~~~di~~p~~~~~~-~~~-~~f~~~~~i~~~~ 226 (285)
T 3rvy_A 159 FYIFAIMATQLFGERFPE----WFGTLGESFYTLFQVMT------LESWSMGIVRPLMEVYP-YAW-VFFIPFIFVVTFV 226 (285)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHT------TTTCCCCCHHHHHTTCT-TTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccc----ccCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHcCC-hHH-hhHHHHHHHHHHH
Confidence 467888998888643321 12233455555554433 23455 55422111111 222 2335678888999
Q ss_pred HHHHHHHHhhcchHHhHHHHHHHHHhh
Q psy13301 81 LLAIIQGLIIDAFGELRDQLESVKEDM 107 (194)
Q Consensus 81 ~lnIi~GIIIDtF~eLR~e~~~~~~d~ 107 (194)
++|++.|+|+|+|++.++++++.+++.
T Consensus 227 ~lnl~~aii~~~f~~~~~~~~~~~~~~ 253 (285)
T 3rvy_A 227 MINLVVAICVDAMAILNQKEEQHIIDE 253 (285)
T ss_dssp HHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999887766555443
No 3
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=95.48 E-value=0.0021 Score=52.43 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=51.7
Q ss_pred EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q psy13301 2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVIL 81 (194)
Q Consensus 2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~ 81 (194)
+|+||++|...|.+..+ ..=+|....+.+.+.- -++.|-++.+.+.. +...++. +|=.+|.++...++
T Consensus 144 ~~ifa~~g~~lf~~~~~--------~~F~~~~~a~~~lf~~--~t~~~w~~i~~~~~-~~~~~~~-~~f~~~~~i~~~i~ 211 (229)
T 4dxw_A 144 LYIYATMGAILFGNDDP--------SRWGDLGISLITLFQV--LTLSSWETVMLPMQ-EIYWWSW-VYFFSFIIICSITI 211 (229)
T ss_dssp HHHHHHHHHHHTTTTSC--------TTTSSHHHHHHHHHHH--HTTSSTHHHHHHHH-TTCTTHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCc--------ccccCHHHHHHHHHHH--HccCCHHHHHHHHH-HhCCcHH-HHHHHHHHHHHHHH
Confidence 46889999988875321 1235555655555432 23344555443211 1111333 34467888889999
Q ss_pred HHHHHHHhhcchHHhH
Q psy13301 82 LAIIQGLIIDAFGELR 97 (194)
Q Consensus 82 lnIi~GIIIDtF~eLR 97 (194)
+|++.|+|+|+|++-+
T Consensus 212 lNlfiavi~~~f~~~~ 227 (229)
T 4dxw_A 212 LNLVIAILVDVVIQKK 227 (229)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999643
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=88.94 E-value=0.24 Score=45.75 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=28.9
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHH-HHHHhhccCceeecCCccc
Q psy13301 64 VYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLE-SVKEDMESNCFICGIGKDY 120 (194)
Q Consensus 64 ~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~-~~~~d~~~~CFICgi~r~~ 120 (194)
.+|++. ++.+++.++++|++.|+|++.|+++..+++ +.++.+++..-+||.....
T Consensus 401 ~gr~f~--~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~~~ 456 (514)
T 2r9r_B 401 GGKIVG--SLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS 456 (514)
T ss_dssp HHHHHH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred chHhhe--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCccc
Confidence 567653 677888899999999999999999866543 3345566889999976643
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=60.64 E-value=8 Score=32.78 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=40.7
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHHHH--
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVK-- 104 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~~~-- 104 (194)
..-+++|-++.+.-.- |-||.. |.+ ...|++ .++.+++.+++++++.|+|.+.|.+-.++++..+
T Consensus 161 ~~~~s~y~~~~t~ttv------Gygd~~--p~t---~~~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 227 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTT------GYGDTI--PQS---FAGRVL--AGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNW 227 (355)
T ss_dssp SHHHHHHHHHHHHTTC------CCSSSC--CCS---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeec------CCCCCC--CCC---hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456777777665433 446643 322 256765 3567778888999999999999986543332221
Q ss_pred HhhccCceeecCCccccccC-----CCChh--hhhhhhcchhhHHHHHH
Q psy13301 105 EDMESNCFICGIGKDYFDKV-----PHGFD--THVQQEHNLANYMFFLM 146 (194)
Q Consensus 105 ~d~~~~CFICgi~r~~fd~~-----~~gF~--~Hi~~eHnmWnYl~fi~ 146 (194)
+..++.-+-.+++.+.+++- ..-|. +.+-++...-+.+|++.
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~ 276 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVV 276 (355)
T ss_dssp C------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEE
Confidence 12223333345555554431 11222 23344455556677664
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=60.04 E-value=34 Score=25.31 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=41.2
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHH
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLES 102 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~ 102 (194)
..-++++.|+++...- |.||.. |.. ..+|++ .++++++.+.++.++.|.|...+.+-..++++
T Consensus 40 ~~~~a~yf~~~T~tTv------GyGd~~--P~t---~~~r~~--~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~ 102 (139)
T 3eff_K 40 TYPRALWWSVETATTV------GYGDLY--PVT---LWGRLV--AVVVMVAGITSFGLVTAALATWFVGREQERRG 102 (139)
T ss_dssp CHHHHHHHHHHHHTTC------CCSSSC--CCS---SHHHHH--HHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred CHHHHHHHHheeeecc------cCCCCc--CCC---cCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766544 447653 332 256765 34567778888888999999988776555433
No 7
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=59.48 E-value=3.1 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.377 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHhhccCceeecCCccccccCCCChhhhhhhhc
Q psy13301 94 GELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEH 136 (194)
Q Consensus 94 ~eLR~e~~~~~~d~~~~CFICgi~r~~fd~~~~gF~~Hi~~eH 136 (194)
++++++++++-+.+...|-|||.. ++.. .-..|+-++|
T Consensus 6 k~~~~~~~~l~~~Q~g~C~IC~~~---l~~~--~~~~~vDHdH 43 (157)
T 1e7l_A 6 KLYKEEKQKFYDAQNGKCLICQRE---LNPD--VQANHLDHDH 43 (157)
T ss_dssp HHHHHHHHHHHHHTTTBCTTTCCB---CCSS--GGGSEEEECC
T ss_pred hhHHHHHHHHHHHhCCcCcccCCc---cccc--cccccccCCC
Confidence 678999999999999999999975 2211 1145666666
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=48.50 E-value=15 Score=28.36 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=36.7
Q ss_pred CccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHH
Q psy13301 28 KCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLE 101 (194)
Q Consensus 28 ~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~ 101 (194)
.=+++|-|++|.-.- |.||.. |.. ..+|++ .++.+++-++++.++.|+|...|.+...+++
T Consensus 85 ~~~a~y~s~vTltTV------GYGDi~--P~t---~~gr~~--~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 85 YPDALWWSVETATTV------GYGDLY--PVT---LWGRCV--AVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp HHHHHHHHHHHHTTC------CCSSSC--CCS---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred ccceeheeeeeeecc------cCCCCC--CCC---hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666554433 456643 322 257776 4566777777888888888888876654443
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=44.98 E-value=24 Score=26.43 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=40.6
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHH
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ 99 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e 99 (194)
.+-+++|-|++|.-.-| -||.. |.. ..+|++ .++.+++.+.++.++.|.|...|.+.+.+
T Consensus 43 ~~~~a~y~~~~T~tTvG------yGDi~--P~t---~~gr~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 102 (137)
T 4h33_A 43 NYPDALWWAIVTATTVG------YGDIV--PVT---PIGRIL--ASIMMLFGIAFIGMITSTITNFFRCKKPT 102 (137)
T ss_dssp SHHHHHHHHHHHHTTCC------CSSSC--CCS---HHHHHH--HHHHHHHHHHHHHHHHHHHHTTTTTTTTC
T ss_pred CHHHHHHHHHHHHHccc------CCCCC--CCC---HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887765544 47753 322 357766 35667777888888899999888764443
No 10
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=39.62 E-value=25 Score=27.11 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=45.4
Q ss_pred ccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHHHHH
Q psy13301 26 DKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKE 105 (194)
Q Consensus 26 ~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~~~~ 105 (194)
...-++++.|++|...-| .||.. |.+ ..+|++ .++++++.++++-++.|.|...+.+.+.++++..+
T Consensus 66 ~~~~~a~yf~~~T~tTvG------yGDi~--P~t---~~~r~~--~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVG------YGDLY--PVT---LWGRLV--AVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFV 132 (166)
T ss_dssp CSTTTTTTTTHHHHSCCC------CSSSC--CCS---STTTTT--THHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccc------CCCCC--CCC---HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888887765544 46653 322 245654 45667788888889999999999877766655544
Q ss_pred h
Q psy13301 106 D 106 (194)
Q Consensus 106 d 106 (194)
.
T Consensus 133 ~ 133 (166)
T 3pjs_K 133 R 133 (166)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=34.94 E-value=34 Score=24.16 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=40.3
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHH
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQL 100 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~ 100 (194)
..=++++.|+.+...- |.||.. |.. ..+|++ ..+++++.++++.++.|.|...+.+.++++
T Consensus 40 ~~~~a~y~~~~T~tTv------GyGDi~--P~t---~~gr~~--~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2k1e_A 40 SYPDAIWWSVETATTV------GYGDRY--PVT---EEGRKV--AEQVMKAGIEVFALVTAALATDFVRREEER 100 (103)
T ss_dssp CGGGTTTTTTGGGGCC------SCCSSC--CCS---SSCTHH--HHHHHHHHHHHHHHTHHHHHTTGGGHHHHT
T ss_pred cHHHHHHHHHHHHhcc------cCCCCC--CCC---hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667666544433 456653 322 246766 467777888888999999999998776654
No 12
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=34.44 E-value=38 Score=29.32 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=39.7
Q ss_pred ccchHHHHHHhhhhccccCCcccccCCCCCC-CCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHH
Q psy13301 29 CHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG-DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLES 102 (194)
Q Consensus 29 C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~-~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~ 102 (194)
=|.++.|+++.-.-| .||.....+. ......|.+ .++++++-+.++-++.++|-+.+..++.++++
T Consensus 226 ~da~y~~~vTltTvG------yGd~~p~t~~g~~~~~y~~~--~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~~~ 292 (309)
T 3um7_A 226 LEAIYFVIVTLTTVG------FGDYVAGADPRQDSPAYQPL--VWFWILLGLAYFASVLTTIGNWLRVVSRRTRA 292 (309)
T ss_dssp HHHHHHHHHHHTTCC------CSSCCTTCCTTCCCSTHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTTTTTC--
T ss_pred HHHHHHHHhheeccc------cCCCCCCCccccccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888887765554 4665421111 111133433 45777888888888899999888877654443
No 13
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.40 E-value=9.6 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.0
Q ss_pred CceeecCCccccccC---CCChhhh
Q psy13301 110 NCFICGIGKDYFDKV---PHGFDTH 131 (194)
Q Consensus 110 ~CFICgi~r~~fd~~---~~gF~~H 131 (194)
+|-+||..++.|++. ..||++-
T Consensus 42 ~CP~Cga~K~~F~~~~~~~sgf~en 66 (70)
T 1dx8_A 42 MCPACRSPKNQFKSIKKVIAGFAEN 66 (70)
T ss_dssp BCTTTCCBGGGEEECCCBCCCSCCC
T ss_pred cCCCCCCCHHHceEccccCCChhhh
Confidence 899999999999874 4577653
No 14
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=29.69 E-value=1.2e+02 Score=21.99 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=39.1
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHH
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ 99 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e 99 (194)
..-+++|.|+.+.-.- |.||.. |.+ ..+|.+- ++.+++-++++.++.|.+...+.+..++
T Consensus 61 ~~~~a~y~~~~T~tTv------GyGDi~--P~t---~~gr~~~--~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 61 TYPRALWWACETATTV------AYGDLY--PVT---LWGRLVA--VVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp SHHHHHHHHHHHHTTC------CCSSSC--CCS---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeee------ecCCCC--CCC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666655433 456653 332 3578765 5677777888888889998888865554
No 15
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=29.65 E-value=12 Score=26.45 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=23.7
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..-+..+..+.-+++|.+.
T Consensus 45 D~v~Cf~C~~~l~~We~~DdP~~eH~~~ 72 (85)
T 3m1d_A 45 DKVKCFCCGLMLDNWKLGDSPIQKHKQL 72 (85)
T ss_dssp TCEEETTTCCEECSCCTTCCHHHHHHHH
T ss_pred CEEEeCCcCCEecCCCCCCCHHHHHHHH
Confidence 3579999999988888888889999775
No 16
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=28.56 E-value=13 Score=22.91 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=8.1
Q ss_pred hccCceeecC
Q psy13301 107 MESNCFICGI 116 (194)
Q Consensus 107 ~~~~CFICgi 116 (194)
.+++||+||-
T Consensus 9 ~~~~C~~Cgk 18 (40)
T 1a6b_B 9 DRDQCAYCKE 18 (40)
T ss_dssp CSSSCSSSCC
T ss_pred CCCeeeECCC
Confidence 3689999985
No 17
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.08 E-value=13 Score=23.54 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=12.4
Q ss_pred CceeecCCcccccc
Q psy13301 110 NCFICGIGKDYFDK 123 (194)
Q Consensus 110 ~CFICgi~r~~fd~ 123 (194)
+|-+||..++.|++
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 89999999998875
No 18
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=27.02 E-value=25 Score=29.43 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=44.2
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHHHHHh
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKED 106 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~~~~d 106 (194)
..-+++|.|+++...-| .||.. |.+ ..+|++- ++++++.++++-++.|.+.+.+.+-+-++......
T Consensus 45 ~~~~a~y~~~~t~tTvG------yGd~~--p~t---~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVG------YGDYS--PST---PLGMYFT--VTLIVLGIGTFAVAVERLLEFLINREQMKLMGLID 111 (336)
T ss_dssp CSSTTHHHHHHHHTTCC------CSSCC--CCC---SSHHHHH--THHHHTTSTTTTTHHHHHTTTC-------------
T ss_pred CHHHHHHHHHHHhhccc------CCCCC--CCC---cCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56688999988776544 45543 322 2467653 34566666777888899999888754433222222
Q ss_pred --hccCceeecCCcc
Q psy13301 107 --MESNCFICGIGKD 119 (194)
Q Consensus 107 --~~~~CFICgi~r~ 119 (194)
.++.-.|||..|-
T Consensus 112 ~~~~~~viI~G~G~~ 126 (336)
T 1lnq_A 112 VAKSRHVVICGWSES 126 (336)
T ss_dssp ----CEEEEESCCHH
T ss_pred hcccCCEEEECCcHH
Confidence 2567899997553
No 19
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=26.72 E-value=14 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.1
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..=...+..+.-+++|.+.
T Consensus 54 D~V~Cf~C~~~l~~We~~DdP~~eH~r~ 81 (94)
T 2poi_A 54 DTVRCFSCHAAVDRWQYGDSAVGRHRKV 81 (94)
T ss_dssp TCEEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred CEEEcccCCCEeCCCCCCCCHHHHHHHH
Confidence 3579999999888888877888888874
No 20
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=25.56 E-value=15 Score=27.51 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=23.9
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..=...|..+.-|++|.+.
T Consensus 47 D~V~Cf~C~~~L~~We~~DdP~~eH~r~ 74 (116)
T 1se0_A 47 DKVKCFFCGVEIGSWEQEDQPVPEHQRW 74 (116)
T ss_dssp TCEEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred CEEEecCcCCEecCCCCCCCHHHHHHHH
Confidence 4579999999998888888889999875
No 21
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=25.39 E-value=16 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=23.7
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..=...+..+.-|++|.+.
T Consensus 53 D~V~Cf~C~~~L~~We~~DdP~~EH~r~ 80 (142)
T 2qfa_A 53 DLAQCFFCFKELEGWEPDDDPIEEHKKH 80 (142)
T ss_dssp TCEEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred CEEEcCCCCCEecccCCCCCHHHHHHHH
Confidence 3579999999888888888889999875
No 22
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=24.25 E-value=91 Score=23.28 Aligned_cols=30 Identities=7% Similarity=0.416 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhcchHHhHHHHHHHH
Q psy13301 75 FFVIVILLAIIQGLIIDAFGELRDQLESVK 104 (194)
Q Consensus 75 iiv~ii~lnIi~GIIIDtF~eLR~e~~~~~ 104 (194)
++|++.++-|+.+|.+-.+...+++.+..+
T Consensus 6 l~vvi~ii~il~~~~~p~~~~~~~~~~~~~ 35 (158)
T 2hi2_A 6 LMIVIAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 567778889999999999988776655443
No 23
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=23.77 E-value=23 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=23.6
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..=...+..+.-|++|.+.
T Consensus 77 D~V~Cf~C~~~L~~We~~DdP~~EH~r~ 104 (141)
T 1i4o_C 77 DQVQCFCCGGKLKNWEPCDRAWSEHRRH 104 (141)
T ss_pred CEEEeccCCCEecCCCCCCCHHHHHHHH
Confidence 3579999999888888888889898875
No 24
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=23.49 E-value=18 Score=26.67 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=22.7
Q ss_pred ccCceeecCCccccccCCCChhhhhhh
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
+-+||-||..=...|..+.-+++|.+.
T Consensus 56 ~V~Cf~C~~~L~~We~~DdP~~eH~r~ 82 (106)
T 2vm5_A 56 TVQCFSCGGCLGNWEEGDDPWKEHAKW 82 (106)
T ss_dssp CEEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEEccccCCEecCCCCCCCHHHHHHHH
Confidence 469999999888888877888888875
No 25
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=23.41 E-value=88 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHhHHHHHHH
Q psy13301 75 FFVIVILLAIIQGLIIDAFGELRDQLESV 103 (194)
Q Consensus 75 iiv~ii~lnIi~GIIIDtF~eLR~e~~~~ 103 (194)
++|++.++-|+.+|.+-.|...+++.+..
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~ 34 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAA 34 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888899999999998877665543
No 26
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=23.16 E-value=91 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.439 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHhHHHHHH
Q psy13301 75 FFVIVILLAIIQGLIIDAFGELRDQLES 102 (194)
Q Consensus 75 iiv~ii~lnIi~GIIIDtF~eLR~e~~~ 102 (194)
++|++.++-|+.+|.+-.|...+++.+.
T Consensus 6 llivi~Ii~il~~ia~p~~~~~~~~~~~ 33 (144)
T 1oqw_A 6 LMIVVAIIGILAAIAIPQYQNYVARSEG 33 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888899999888777655443
No 27
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=22.56 E-value=19 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.4
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-+-+||-||..=...+..+.-+++|.+.
T Consensus 71 D~V~Cf~C~~~L~~We~~DdP~~eH~r~ 98 (111)
T 2qra_D 71 DTVRCFSCHAAVDRWQYGDSAVGRHRKV 98 (111)
T ss_dssp TCEEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred CEEEcccCCCEeCCCCCCCCHHHHHHHH
Confidence 3579999999988888877888888874
No 28
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.08 E-value=47 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.4
Q ss_pred hhcchHHhHHHHHHHHHhhc
Q psy13301 89 IIDAFGELRDQLESVKEDME 108 (194)
Q Consensus 89 IIDtF~eLR~e~~~~~~d~~ 108 (194)
++||--+|||+-+++.++.+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k 27 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNK 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988766
No 29
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=21.51 E-value=20 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=22.4
Q ss_pred ccCceeecCCccccccCCCChhhhhhh
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
+-+||-||..=...+..+.-+++|.+.
T Consensus 48 ~v~Cf~C~~~l~~We~~Ddp~~eH~r~ 74 (97)
T 3d9t_A 48 DVKCFCCDGGLRCWESGDDPWVEHAKW 74 (97)
T ss_dssp CEEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEEecCcCCEecCCCCCCCHHHHHHHh
Confidence 469999999888888777788888865
No 30
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=21.16 E-value=21 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=24.1
Q ss_pred hccCceeecCCccccccCCCChhhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQE 135 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~e 135 (194)
-+-+||-||..=...+....-|++|.+.-
T Consensus 59 D~V~Cf~C~~~L~~We~~DdP~~EH~r~~ 87 (124)
T 1jd5_A 59 DRVRCFSCGGGLMDWNDNDEPWEQHALWL 87 (124)
T ss_dssp TCEEETTTCCEEECCCTTCCHHHHHHHHC
T ss_pred CEEEecCCCCEecCCCCCCCHHHHHHHHC
Confidence 35799999999988888888898888753
No 31
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.02 E-value=23 Score=22.82 Aligned_cols=14 Identities=50% Similarity=1.113 Sum_probs=12.2
Q ss_pred CceeecCCcccccc
Q psy13301 110 NCFICGIGKDYFDK 123 (194)
Q Consensus 110 ~CFICgi~r~~fd~ 123 (194)
+|-+||..++.|++
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 89999999998875
No 32
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.94 E-value=20 Score=23.50 Aligned_cols=15 Identities=53% Similarity=1.234 Sum_probs=13.2
Q ss_pred CceeecCCccccccC
Q psy13301 110 NCFICGIGKDYFDKV 124 (194)
Q Consensus 110 ~CFICgi~r~~fd~~ 124 (194)
+|-+||..|+.|++.
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEV 52 (54)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCcCCCCcHHHceEc
Confidence 899999999999764
No 33
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=20.59 E-value=22 Score=26.82 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=23.1
Q ss_pred ccCceeecCCccccccCCCChhhhhhh
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
+-+||-||..=...+..+.-|++|.+.
T Consensus 60 ~V~Cf~C~~~L~~We~~DdP~~eH~r~ 86 (121)
T 1g73_C 60 KVKCFHCGGGLTDWKPSEDPWEQHAKW 86 (121)
T ss_dssp CEEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEEcCcCCCCcCCCCCCCCHHHHHHHH
Confidence 479999999888888878888888875
Done!