Query psy13301
Match_columns 194
No_of_seqs 114 out of 217
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 15:59:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 63.1 7.9 0.00057 25.9 5.7 61 27-100 40-100 (103)
2 d1e7la2 d.4.1.5 (A:1-103) Reco 53.5 2.5 0.00018 29.7 1.5 24 94-117 6-29 (103)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 48.5 9.6 0.0007 25.6 4.1 31 75-105 6-36 (158)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 42.1 13 0.00098 20.2 3.1 21 70-90 4-24 (32)
5 d2dsxa1 g.41.5.1 (A:1-52) Rubr 39.2 3 0.00022 25.8 0.0 16 109-124 37-52 (52)
6 d1nnqa2 g.41.5.1 (A:135-171) R 30.5 5 0.00037 23.1 0.0 16 108-123 20-35 (37)
7 d1dx8a_ g.41.5.1 (A:) Rubredox 30.0 4.8 0.00035 26.3 -0.2 23 109-131 41-66 (70)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 26.9 15 0.0011 19.4 1.6 15 142-156 13-27 (27)
9 d1yuza2 g.41.5.1 (A:167-202) N 25.5 7 0.00051 22.3 0.0 15 108-122 20-34 (36)
10 d1i3oe_ g.52.1.1 (E:) BIR doma 24.3 8 0.00058 27.0 0.1 28 107-134 70-97 (111)
11 d6rxna_ g.41.5.1 (A:) Rubredox 24.1 7.8 0.00057 23.1 0.0 14 110-123 31-44 (45)
12 d2vsla1 g.52.1.1 (A:250-345) B 21.7 9.5 0.00069 25.9 0.1 27 108-134 48-74 (96)
13 d1lkoa2 g.41.5.1 (A:148-191) R 21.6 11 0.00078 22.4 0.3 18 109-126 25-42 (44)
14 d1se0a_ g.52.1.1 (A:) BIR doma 21.4 9.6 0.0007 25.8 0.1 27 108-134 39-65 (97)
15 d1jd5a_ g.52.1.1 (A:) BIR doma 20.4 10 0.00076 26.0 0.1 40 108-151 47-86 (105)
16 d1brfa_ g.41.5.1 (A:) Rubredox 20.3 9.8 0.00071 23.4 -0.1 16 109-124 36-51 (53)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=63.10 E-value=7.9 Score=25.92 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=41.0
Q ss_pred cCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHH
Q psy13301 27 KKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQL 100 (194)
Q Consensus 27 ~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~ 100 (194)
..-+++|-|+++.-.- |-||.. |.. ..+|++ .++.+++.+.++.++.|++.+.|.+-|+++
T Consensus 40 s~~~aly~~~vT~tTv------GYGDi~--P~t---~~gr~~--~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~r 100 (103)
T d1r3jc_ 40 TYPRALWWSVETATTV------GYGDLY--PVT---LWGRCV--AVVVMVAGITSFGLVTAALATWFVGREQER 100 (103)
T ss_dssp SHHHHHHHHHHHHTTC------CCSSSC--CCS---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhheeeeccc------ccCccc--cCC---hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557788888776654 457753 322 367876 456677777788888888888887655544
No 2
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=53.46 E-value=2.5 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHhhccCceeecCC
Q psy13301 94 GELRDQLESVKEDMESNCFICGIG 117 (194)
Q Consensus 94 ~eLR~e~~~~~~d~~~~CFICgi~ 117 (194)
...++|++++-+.+..+|-|||.+
T Consensus 6 k~~~ee~~~l~~~Q~g~C~IC~~~ 29 (103)
T d1e7la2 6 KLYKEEKQKFYDAQNGKCLICQRE 29 (103)
T ss_dssp HHHHHHHHHHHHHTTTBCTTTCCB
T ss_pred ccCHHHHHHHHHHhCCcCCCCCCC
Confidence 446788999999999999999853
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=48.51 E-value=9.6 Score=25.56 Aligned_cols=31 Identities=6% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhcchHHhHHHHHHHHH
Q psy13301 75 FFVIVILLAIIQGLIIDAFGELRDQLESVKE 105 (194)
Q Consensus 75 iiv~ii~lnIi~GIIIDtF~eLR~e~~~~~~ 105 (194)
++|+|.++-|+++|.+-.|...|++.+..+.
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~~a~~~~~ 36 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTARAQVSEA 36 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999988887655443
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=42.13 E-value=13 Score=20.17 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy13301 70 DITFFFFVIVILLAIIQGLII 90 (194)
Q Consensus 70 Dl~ffiiv~ii~lnIi~GIII 90 (194)
--.||++.+-++.-|-.|||-
T Consensus 4 gavfyivfialffgiavgiif 24 (32)
T d2e74e1 4 GAVFYIVFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHhhhee
Confidence 346888888888888888873
No 5
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=39.19 E-value=3 Score=25.81 Aligned_cols=16 Identities=44% Similarity=0.874 Sum_probs=13.7
Q ss_pred cCceeecCCccccccC
Q psy13301 109 SNCFICGIGKDYFDKV 124 (194)
Q Consensus 109 ~~CFICgi~r~~fd~~ 124 (194)
=.|-+||..|+.|+++
T Consensus 37 w~CP~C~a~K~~F~kk 52 (52)
T d2dsxa1 37 WACPVCGASKDAFEKQ 52 (52)
T ss_dssp CBCTTTCCBGGGEEEC
T ss_pred CCCcCCCCcHHHhccC
Confidence 3899999999999874
No 6
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=30.50 E-value=5 Score=23.07 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.3
Q ss_pred ccCceeecCCcccccc
Q psy13301 108 ESNCFICGIGKDYFDK 123 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~ 123 (194)
-.+|-|||-.++.|++
T Consensus 20 P~~CPvCg~~~~~F~~ 35 (37)
T d1nnqa2 20 PEYCPVCGAPKEKFVV 35 (37)
T ss_dssp CSBCTTTCCBGGGSEE
T ss_pred CCcCCCCCCcHHHcEE
Confidence 3689999999998865
No 7
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=29.98 E-value=4.8 Score=26.33 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.1
Q ss_pred cCceeecCCccccccC---CCChhhh
Q psy13301 109 SNCFICGIGKDYFDKV---PHGFDTH 131 (194)
Q Consensus 109 ~~CFICgi~r~~fd~~---~~gF~~H 131 (194)
=.|-+||-.|+.|++. .-||++-
T Consensus 41 W~CP~Cga~K~~F~~~~~~~agf~~N 66 (70)
T d1dx8a_ 41 FMCPACRSPKNQFKSIKKVIAGFAEN 66 (70)
T ss_dssp CBCTTTCCBGGGEEECCCBCCCSCCC
T ss_pred CCCcCCCCcHHHheEcccccCChHHh
Confidence 3799999999999874 4577643
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=26.92 E-value=15 Score=19.35 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHhccCCCCCC
Q psy13301 142 MFFLMHLINKPDTEF 156 (194)
Q Consensus 142 l~fi~yL~~K~~te~ 156 (194)
+||.+|-+.|.++|.
T Consensus 13 lf~aayqqykrpnel 27 (27)
T d2e74g1 13 LFYAAYQQYKRPNEL 27 (27)
T ss_dssp HHHHHHHHTTSCCCT
T ss_pred HHHHHHHHhcCCCCC
Confidence 688899888888773
No 9
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=25.54 E-value=7 Score=22.32 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=12.0
Q ss_pred ccCceeecCCccccc
Q psy13301 108 ESNCFICGIGKDYFD 122 (194)
Q Consensus 108 ~~~CFICgi~r~~fd 122 (194)
-.+|-|||-.++.|.
T Consensus 20 Pe~CPvCg~~~~~F~ 34 (36)
T d1yuza2 20 FEKCPICFRPKDTFT 34 (36)
T ss_dssp CSBCTTTCCBGGGCE
T ss_pred CCcCCCCCCcHHHcC
Confidence 367999999888875
No 10
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.32 E-value=8 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=23.1
Q ss_pred hccCceeecCCccccccCCCChhhhhhh
Q psy13301 107 MESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 107 ~~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
-.-+||-||+.=...+..+.-+++|.+.
T Consensus 70 D~v~Cf~C~~~l~~W~~~DdP~~eH~r~ 97 (111)
T d1i3oe_ 70 DQVQCFACGGKLKNWEPGDRAWSEHRRH 97 (111)
T ss_dssp TEEEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred CeEEeCcCCCEeCCCCCCCCHHHHHHHH
Confidence 3568999999988888888788888765
No 11
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=24.09 E-value=7.8 Score=23.13 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=12.2
Q ss_pred CceeecCCcccccc
Q psy13301 110 NCFICGIGKDYFDK 123 (194)
Q Consensus 110 ~CFICgi~r~~fd~ 123 (194)
+|-+||-.|+.|+.
T Consensus 31 ~CP~C~a~K~~F~P 44 (45)
T d6rxna_ 31 CCPVCGVSKDQFSP 44 (45)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCcCCCCcHHHccc
Confidence 79999999998864
No 12
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.66 E-value=9.5 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.551 Sum_probs=23.5
Q ss_pred ccCceeecCCccccccCCCChhhhhhh
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
.-+||-||+.=...+..+.-+++|.+.
T Consensus 48 ~v~Cf~C~~~l~~W~~~D~P~~eH~~~ 74 (96)
T d2vsla1 48 KVKCFHCGGGLTDWKPSEDPWEQHAKW 74 (96)
T ss_dssp CEEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEEeccCCCEeCCCCCCCCHHHHHHHH
Confidence 678999999988888888889999875
No 13
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.56 E-value=11 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.6
Q ss_pred cCceeecCCccccccCCC
Q psy13301 109 SNCFICGIGKDYFDKVPH 126 (194)
Q Consensus 109 ~~CFICgi~r~~fd~~~~ 126 (194)
.+|-+||-.++.|+....
T Consensus 25 ~~CPvC~~p~~~Fe~~~e 42 (44)
T d1lkoa2 25 ELCPACAHPKAHFELLGI 42 (44)
T ss_dssp SBCTTTCCBGGGEEECCC
T ss_pred CcCCCCCCcHHHHeeccc
Confidence 589999999999987543
No 14
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.42 E-value=9.6 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=22.5
Q ss_pred ccCceeecCCccccccCCCChhhhhhh
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQ 134 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~ 134 (194)
.-+||-||+.=...+....-+++|.+.
T Consensus 39 ~v~C~~C~~~l~~W~~~D~p~~eH~r~ 65 (97)
T d1se0a_ 39 KVKCFFCGVEIGSWEQEDQPVPEHQRW 65 (97)
T ss_dssp CEEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEEeCcCCCCcCCCCCCCCHHHHHHHH
Confidence 578999999888888777778888865
No 15
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.37 E-value=10 Score=25.98 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred ccCceeecCCccccccCCCChhhhhhhhcchhhHHHHHHHhccC
Q psy13301 108 ESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINK 151 (194)
Q Consensus 108 ~~~CFICgi~r~~fd~~~~gF~~Hi~~eHnmWnYl~fi~yL~~K 151 (194)
.-+||-||+.=...+..+.-|++|.+..= .--|+..++.+
T Consensus 47 ~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P----~C~fv~~~k~~ 86 (105)
T d1jd5a_ 47 RVRCFSCGGGLMDWNDNDEPWEQHALWLS----QCRFVKLMKGQ 86 (105)
T ss_dssp CEEETTTCCEEECCCTTCCHHHHHHHHCT----TCHHHHHHHCH
T ss_pred EEEeCccCCCccCCCCCCCHHHHHHHHCc----CCcchhhhCCH
Confidence 56899999998888888888999976532 23455555443
No 16
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.28 E-value=9.8 Score=23.40 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=13.5
Q ss_pred cCceeecCCccccccC
Q psy13301 109 SNCFICGIGKDYFDKV 124 (194)
Q Consensus 109 ~~CFICgi~r~~fd~~ 124 (194)
=+|-+||..|+.|++.
T Consensus 36 w~CP~C~a~K~~F~~~ 51 (53)
T d1brfa_ 36 WVCPICGAPKSEFEKL 51 (53)
T ss_dssp CBCTTTCCBGGGEEES
T ss_pred CCCcCCCCcHHHceEc
Confidence 3899999999999764
Done!