RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13301
(194 letters)
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 43.0 bits (102), Expect = 2e-05
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 1 MLYIYTVIAFNFFRKFYVQEEDDVVDK-KCHDMMTCFVFHLYKGVRAGGGIGD-EIGDPD 58
+L+I+ +I F + D + + + L R G ++
Sbjct: 104 LLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDT 163
Query: 59 GDDYEVYRIIFDITFFFFVIVILLAIIQGLI 89
V IF + F V+LL ++ G+I
Sbjct: 164 LVPGTVLGKIFFVIFIILGGVLLLNLLIGVI 194
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 30.3 bits (69), Expect = 0.70
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 61 DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFG 94
D ++ I I++F+ V ++L+ + L + G
Sbjct: 224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLG 257
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 29.1 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 68 IFDITFFFFVIVILLAIIQGLIIDAFGELRDQL-ESV 103
I+ ++ FV +IL + +I DAFGE++ E+V
Sbjct: 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETV 1433
>gnl|CDD|224039 COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid
transport and metabolism].
Length = 431
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 58 DGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFG 94
GD IF + FF I L ++ +ID G
Sbjct: 112 LGDSSLPSLFIF--SVIFFAIAYLFSLNPSKLIDRVG 146
>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide
A dehydrogenase. [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 308
Score = 28.3 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 RAGGGIGDEIGDPDGDDYEVYRIIFDIT 72
R G G E+ DP+ D YR I+D +
Sbjct: 181 RRDGATGYEVLDPEKDPRRDYRAIYDAS 208
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 28.2 bits (64), Expect = 3.1
Identities = 7/22 (31%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Query: 66 RIIFDITFFFFVIVILLAIIQG 87
++IF++ FF +V++ ++QG
Sbjct: 362 QLIFNVVFF---VVLVSLLLQG 380
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 67 IIFDITFFFFVIVILLAIIQGLIIDAFGEL 96
+ +TF F VI ILL + +I D++ E+
Sbjct: 394 PLLFLTFVFLVIFILLNLFLAIINDSYVEV 423
>gnl|CDD|218698 pfam05695, DUF825, Plant protein of unknown function (DUF825). This
family consists of several plant proteins greater than
1000 residues in length. The function of this family is
unknown.
Length = 1127
Score = 28.3 bits (63), Expect = 3.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 64 VYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFI 113
V ++ I F FV L+ + AF EL+ +LE VK M + I
Sbjct: 987 VREFLYSILFLLFVAGYLVLRYLFFVSRAFIELQTELEKVKSLMIPSYTI 1036
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional.
Length = 326
Score = 27.8 bits (63), Expect = 3.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 9/31 (29%)
Query: 84 IIQGLIIDAFG---------ELRDQLESVKE 105
I+QGL ID F EL ++ ++VK
Sbjct: 294 IVQGLEIDDFSREKIDATLAELEEERDAVKH 324
>gnl|CDD|114257 pfam05525, Branch_AA_trans, Branched-chain amino acid transport
protein. This family consists of several bacterial
branched-chain amino acid transport proteins which are
responsible for the transport of leucine, isoleucine and
valine via proton motive force.
Length = 428
Score = 28.0 bits (63), Expect = 3.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 59 GDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFG 94
G D +Y IF T FF I + L++ I+D G
Sbjct: 111 GSDNPLYLFIF--TVIFFAIALWLSLNPSKIVDRVG 144
>gnl|CDD|217102 pfam02554, CstA, Carbon starvation protein CstA. This family
consists of Carbon starvation protein CstA a predicted
membrane protein. It has been suggested that CstA is
involved in peptide utilisation.
Length = 382
Score = 27.1 bits (61), Expect = 6.1
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 30 HDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLI 89
HD + F G G +E+G V ++F I F F+++++LA+ ++
Sbjct: 100 HDFGSLFASVRRDGKSLGEIAREELG-------PVAGVLFLI-FILFILILVLAVFALVV 151
Query: 90 IDAF 93
++A
Sbjct: 152 VNAL 155
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 26.5 bits (59), Expect = 7.4
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 67 IIFDITFFFFVIVILLAIIQGLII 90
+I F++++L+ I++GL+
Sbjct: 7 LIRLWLLPIFIVILLIGILRGLLS 30
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate
dehydrogenases. MDH is one of the key enzymes in the
citric acid cycle, facilitating both the conversion of
malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are bacterial MDHs, and plant
MDHs localized to the choloroplasts. MDHs are part of
the NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 322
Score = 26.8 bits (60), Expect = 7.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 9/31 (29%)
Query: 84 IIQGLIIDAFG---------ELRDQLESVKE 105
I++GL ID F EL ++ E+VK
Sbjct: 292 IVEGLEIDDFAREKIDATLAELLEEREAVKH 322
>gnl|CDD|206271 pfam14102, Caps_synth_CapC, Capsule biosynthesis CapC. This
family of proteins play a role in capsule biosynthesis.
They are essential for gamma-polyglutamic acid (PGA)
production.
Length = 121
Score = 26.0 bits (58), Expect = 9.3
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 62 YEVYRIIFDITFFF----FVIVILLAIIQGLIIDAF 93
Y + R++ T + F ++L+ ++ L++D F
Sbjct: 48 YLIVRLLSRFTILYGRRRFAAMLLIGVVLRLLLDGF 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.149 0.482
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,674,707
Number of extensions: 1042294
Number of successful extensions: 1911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1899
Number of HSP's successfully gapped: 43
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)