RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13301
         (194 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.13
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 86  QGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFL 145
           QG   D F ELRD  ++    +     I    +   + +    D        L N + +L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGL-NILEWL 219

Query: 146 MHLINKPDTEF 156
            +  N PD ++
Sbjct: 220 ENPSNTPDKDY 230


>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
           sodium-selective ION C membrane, metal transport; HET:
           PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
          Length = 285

 Score = 27.0 bits (60), Expect = 4.2
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 1   MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
             YI+ ++A   F + + +    +         T F       V         I  P  +
Sbjct: 158 FFYIFAIMATQLFGERFPEWFGTLG----ESFYTLFQ------VMTLESWSMGIVRPLME 207

Query: 61  DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKED 106
            Y  Y  +F I F F V  +++ ++  + +DA   L  + E    D
Sbjct: 208 VYP-YAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIID 252


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.149    0.482 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,354,642
Number of extensions: 205824
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 8
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.8 bits)