RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13301
         (194 letters)



>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
           [TaxId: 562]}
          Length = 428

 Score = 25.9 bits (56), Expect = 3.6
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%)

Query: 84  IIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMF 143
            ++ +I+   G++    E +   +  N     I  D FD            E        
Sbjct: 150 NVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGD-FDACQALVKQAFDDEELKVALGL 208

Query: 144 FLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCF 181
              + IN        Q  Y +    Q   +        
Sbjct: 209 NSANSINISR--LLAQICYYFEAVAQLPQETRNQLVVS 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.149    0.482 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 854,686
Number of extensions: 41614
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 13
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.7 bits)