BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13302
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
           Mannosidase
 pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
           Mannosidase
 pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
           Mannosidase Complexed With Swainsonine
 pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
           Mannosidase Complexed With Swainsonine
          Length = 923

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 22  FDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCW 66
           F TH++ +H+LA+ +F  +   N PD  F    +   N   Q C+
Sbjct: 702 FPTHLKTDHHLADSIFETVKRPNHPDATFWKNPS---NPQHQECF 743


>pdb|3NFV|A Chain A, Crystal Structure Of An Alginate Lyase (Bacova_01668) From
           Bacteroides Ovatus At 1.95 A Resolution
 pdb|3NNB|A Chain A, Crystal Structure Of An Alginate Lyase (Bacova_01668) From
           Bacteroides Ovatus At 1.60 A Resolution
          Length = 382

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 22  FDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQR-CW 66
           ++   Q   ++   + FL+  I KP +E+  Q+   W+  Q+  CW
Sbjct: 300 YNATSQDGRSITAALKFLIPYIGKPQSEWPYQQIKEWDKKQEEACW 345


>pdb|2QJV|A Chain A, Crystal Structure Of An Iolb-Like Protein (Stm4420) From
           Salmonella Typhimurium Lt2 At 1.90 A Resolution
 pdb|2QJV|B Chain B, Crystal Structure Of An Iolb-Like Protein (Stm4420) From
           Salmonella Typhimurium Lt2 At 1.90 A Resolution
          Length = 270

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 47  DTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEED 82
           DT   GQETY+   Y  R     P G C ++ Y +D
Sbjct: 174 DTAVEGQETYLEETYYHRFNP--PQGFCLQRVYTDD 207


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.144    0.497 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,251,577
Number of Sequences: 62578
Number of extensions: 124310
Number of successful extensions: 268
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 8
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)