Query psy13302
Match_columns 88
No_of_seqs 100 out of 196
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:00:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a6b_B Momulv, zinc finger pro 65.4 1.3 4.6E-05 24.0 0.1 9 2-10 10-18 (40)
2 1dx8_A Rubredoxin; electron tr 59.4 1.6 5.4E-05 26.4 -0.4 21 4-24 42-65 (70)
3 6rxn_A Rubredoxin; electron tr 58.3 1.9 6.6E-05 24.1 -0.1 14 4-17 32-45 (46)
4 3m1d_A Baculoviral IAP repeat- 51.7 3.5 0.00012 25.4 0.3 26 3-28 47-72 (85)
5 4rxn_A Rubredoxin; electron tr 49.2 3.8 0.00013 23.6 0.1 15 4-18 38-52 (54)
6 2poi_A Baculoviral IAP repeat- 47.6 4.3 0.00015 25.5 0.2 26 3-28 56-81 (94)
7 3bbn_N Ribosomal protein S14; 47.2 6.7 0.00023 25.1 1.1 19 1-19 59-77 (100)
8 1e8j_A Rubredoxin; iron-sulfur 46.7 4.5 0.00015 22.9 0.2 14 4-17 38-51 (52)
9 2qfa_A Baculoviral IAP repeat- 46.3 4.8 0.00016 26.9 0.3 26 3-28 55-80 (142)
10 1u6p_A GAG polyprotein; MLV, A 45.4 4.7 0.00016 23.3 0.1 9 2-10 23-31 (56)
11 2qra_D XIAP, baculoviral IAP r 44.1 5.2 0.00018 26.1 0.2 26 3-28 73-98 (111)
12 1i4o_C X-linked IAP, baculovir 43.7 7.7 0.00026 26.2 1.0 26 3-28 79-104 (141)
13 2v3b_B Rubredoxin 2, rubredoxi 43.3 4.9 0.00017 23.0 -0.0 15 4-18 38-52 (55)
14 1yk4_A Rubredoxin, RD; electro 42.2 4.7 0.00016 22.9 -0.2 14 4-17 37-50 (52)
15 3r8n_N 30S ribosomal protein S 42.2 7.5 0.00026 24.9 0.7 19 1-19 59-77 (100)
16 1se0_A Apoptosis 1 inhibitor; 42.1 6 0.00021 25.8 0.2 26 3-28 49-74 (116)
17 2vqe_N 30S ribosomal protein S 42.0 7.8 0.00027 22.7 0.7 18 2-19 21-38 (61)
18 2vm5_A Baculoviral IAP repeat- 41.4 6 0.00021 25.3 0.2 26 3-28 57-82 (106)
19 1jd5_A DIAP1, apoptosis 1 inhi 40.1 6.5 0.00022 26.0 0.2 26 3-28 61-86 (124)
20 2xzm_N RPS29E; ribosome, trans 38.9 8.2 0.00028 22.3 0.5 18 2-19 17-34 (55)
21 3d9t_A Baculoviral IAP repeat- 38.7 7 0.00024 24.5 0.2 26 3-28 49-74 (97)
22 1g73_C Inhibitors of apoptosis 37.3 7.6 0.00026 25.5 0.2 26 3-28 61-86 (121)
23 2i3h_A Baculoviral IAP repeat- 36.4 8.1 0.00028 26.0 0.2 26 3-28 83-108 (133)
24 3hl5_A Baculoviral IAP repeat- 35.2 8.7 0.0003 24.0 0.2 26 3-28 47-72 (95)
25 3mup_A Baculoviral IAP repeat- 34.7 9 0.00031 25.2 0.2 26 3-28 55-80 (122)
26 3siq_A Apoptosis 1 inhibitor; 33.0 9.8 0.00034 25.7 0.2 26 3-28 71-96 (136)
27 1dsq_A Nucleic acid binding pr 31.6 7.8 0.00027 18.6 -0.4 9 3-11 3-11 (26)
28 3iz6_N 40S ribosomal protein S 29.4 17 0.0006 21.0 0.8 18 3-20 19-36 (56)
29 2lk0_A RNA-binding protein 5; 29.3 11 0.00038 19.1 -0.1 12 2-13 19-30 (32)
30 3j20_P 30S ribosomal protein S 28.8 17 0.0006 21.0 0.7 18 3-20 19-36 (56)
31 2prx_A Thioesterase superfamil 26.8 13 0.00046 23.6 -0.0 10 4-13 17-26 (160)
32 4ayb_N DNA-directed RNA polyme 26.0 12 0.0004 22.6 -0.4 8 3-10 5-12 (66)
33 1ef4_A Subunit N, DNA-directed 25.4 14 0.00047 21.5 -0.1 8 3-10 4-11 (55)
34 2ebr_A Nuclear pore complex pr 25.3 24 0.0008 19.6 0.8 21 3-23 26-46 (47)
35 1nc8_A Nucleocapsid protein; H 24.0 15 0.0005 17.9 -0.2 9 3-11 7-15 (29)
36 3u5c_d S36, YS29, 40S ribosoma 23.2 17 0.00059 21.0 -0.0 17 3-19 19-35 (56)
37 1ceu_A Protein (HIV-1 regulato 22.8 22 0.00074 20.4 0.4 10 28-37 38-47 (51)
38 1twf_J DNA-directed RNA polyme 21.0 17 0.00057 22.1 -0.4 8 3-10 5-12 (70)
39 2zjr_U 50S ribosomal protein L 20.5 23 0.00078 21.8 0.1 11 1-11 1-11 (81)
40 1zfo_A LAsp-1; LIM domain, zin 20.1 29 0.00098 17.1 0.5 18 1-18 2-19 (31)
No 1
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=65.44 E-value=1.3 Score=24.04 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=7.5
Q ss_pred CceeeeeCC
Q psy13302 2 ESNCFICGI 10 (88)
Q Consensus 2 kn~CFICgi 10 (88)
++.||+||-
T Consensus 10 ~~~C~~Cgk 18 (40)
T 1a6b_B 10 RDQCAYCKE 18 (40)
T ss_dssp SSSCSSSCC
T ss_pred CCeeeECCC
Confidence 578999985
No 2
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=59.36 E-value=1.6 Score=26.37 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.3
Q ss_pred eeeeeCCCccccccC---CCChHH
Q psy13302 4 NCFICGIGKDYFDKV---PHGFDT 24 (88)
Q Consensus 4 ~CFICgi~r~~fd~~---~~~F~~ 24 (88)
+|-+||..++.|++. ..||++
T Consensus 42 ~CP~Cga~K~~F~~~~~~~sgf~e 65 (70)
T 1dx8_A 42 MCPACRSPKNQFKSIKKVIAGFAE 65 (70)
T ss_dssp BCTTTCCBGGGEEECCCBCCCSCC
T ss_pred cCCCCCCCHHHceEccccCCChhh
Confidence 799999999999887 357764
No 3
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.30 E-value=1.9 Score=24.08 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=11.9
Q ss_pred eeeeeCCCcccccc
Q psy13302 4 NCFICGIGKDYFDK 17 (88)
Q Consensus 4 ~CFICgi~r~~fd~ 17 (88)
+|-+||..++.|+.
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 78899999988875
No 4
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=51.68 E-value=3.5 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+++|.+.
T Consensus 47 v~Cf~C~~~l~~We~~DdP~~eH~~~ 72 (85)
T 3m1d_A 47 VKCFCCGLMLDNWKLGDSPIQKHKQL 72 (85)
T ss_dssp EEETTTCCEECSCCTTCCHHHHHHHH
T ss_pred EEeCCcCCEecCCCCCCCHHHHHHHH
Confidence 48999999988888878889998775
No 5
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.22 E-value=3.8 Score=23.60 Aligned_cols=15 Identities=53% Similarity=1.234 Sum_probs=12.6
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
+|-+||..++.|+..
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEV 52 (54)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCcCCCCcHHHceEc
Confidence 688999999988764
No 6
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=47.60 E-value=4.3 Score=25.52 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.5
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+.+|.+.
T Consensus 56 V~Cf~C~~~l~~We~~DdP~~eH~r~ 81 (94)
T 2poi_A 56 VRCFSCHAAVDRWQYGDSAVGRHRKV 81 (94)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEcccCCCEeCCCCCCCCHHHHHHHH
Confidence 48999999888888777788888774
No 7
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=47.22 E-value=6.7 Score=25.11 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=16.0
Q ss_pred CCceeeeeCCCccccccCC
Q psy13302 1 MESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 1 ~kn~CFICgi~r~~fd~~~ 19 (88)
+.|.|.+||-.|..+-+-+
T Consensus 59 ~~nRC~~tGR~rg~~r~fg 77 (100)
T 3bbn_N 59 LHRRCFLTGRPRANIRDFG 77 (100)
T ss_dssp CCCCCSSSCCSSSBCTTTC
T ss_pred ccccccCCCCCceeecccC
Confidence 4689999999999887664
No 8
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=46.70 E-value=4.5 Score=22.93 Aligned_cols=14 Identities=50% Similarity=1.113 Sum_probs=12.0
Q ss_pred eeeeeCCCcccccc
Q psy13302 4 NCFICGIGKDYFDK 17 (88)
Q Consensus 4 ~CFICgi~r~~fd~ 17 (88)
+|-+||..++.|++
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 69999999998874
No 9
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=46.29 E-value=4.8 Score=26.94 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=22.0
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||.||..=...+....-|.+|.+.
T Consensus 55 V~Cf~C~~~L~~We~~DdP~~EH~r~ 80 (142)
T 2qfa_A 55 AQCFFCFKELEGWEPDDDPIEEHKKH 80 (142)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEcCCCCCEecccCCCCCHHHHHHHH
Confidence 47999999888888877889999875
No 10
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=45.39 E-value=4.7 Score=23.27 Aligned_cols=9 Identities=22% Similarity=0.659 Sum_probs=7.2
Q ss_pred CceeeeeCC
Q psy13302 2 ESNCFICGI 10 (88)
Q Consensus 2 kn~CFICgi 10 (88)
+..||+||-
T Consensus 23 ~~~C~~Cge 31 (56)
T 1u6p_A 23 RDQCAYCKE 31 (56)
T ss_dssp TTBCSSSCC
T ss_pred CCcceeCCC
Confidence 468999975
No 11
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=44.10 E-value=5.2 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.8
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+++|.+.
T Consensus 73 V~Cf~C~~~L~~We~~DdP~~eH~r~ 98 (111)
T 2qra_D 73 VRCFSCHAAVDRWQYGDSAVGRHRKV 98 (111)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEcccCCCEeCCCCCCCCHHHHHHHH
Confidence 48999999988888777888888774
No 12
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=43.68 E-value=7.7 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.557 Sum_probs=21.9
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-|.+|.+.
T Consensus 79 V~Cf~C~~~L~~We~~DdP~~EH~r~ 104 (141)
T 1i4o_C 79 VQCFCCGGKLKNWEPCDRAWSEHRRH 104 (141)
T ss_pred EEeccCCCEecCCCCCCCHHHHHHHH
Confidence 47999999988888877888888874
No 13
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.30 E-value=4.9 Score=23.02 Aligned_cols=15 Identities=40% Similarity=0.833 Sum_probs=13.3
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
+|-+||..++.|+..
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 799999999999875
No 14
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.21 E-value=4.7 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.890 Sum_probs=12.3
Q ss_pred eeeeeCCCcccccc
Q psy13302 4 NCFICGIGKDYFDK 17 (88)
Q Consensus 4 ~CFICgi~r~~fd~ 17 (88)
+|-+||..++.|+.
T Consensus 37 ~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 37 VCPLCGAPKSEFER 50 (52)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCCCCCCCHHHcEE
Confidence 69999999999875
No 15
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2ykr_N ...
Probab=42.21 E-value=7.5 Score=24.95 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=15.9
Q ss_pred CCceeeeeCCCccccccCC
Q psy13302 1 MESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 1 ~kn~CFICgi~r~~fd~~~ 19 (88)
+.|.|.+||-.|..+-+-+
T Consensus 59 ~~nRC~~tGR~rg~~r~f~ 77 (100)
T 3r8n_N 59 QRNRCRQTGRPHGFLRKFG 77 (100)
T ss_dssp CCCCBTTTBCSSSCCGGGT
T ss_pred hcccccCCCCCceecCCCC
Confidence 4689999999999887654
No 16
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=42.09 E-value=6 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+++|.+.
T Consensus 49 V~Cf~C~~~L~~We~~DdP~~eH~r~ 74 (116)
T 1se0_A 49 VKCFFCGVEIGSWEQEDQPVPEHQRW 74 (116)
T ss_dssp EEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEecCcCCEecCCCCCCCHHHHHHHH
Confidence 48999999988888877888888875
No 17
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=41.96 E-value=7.8 Score=22.72 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.6
Q ss_pred CceeeeeCCCccccccCC
Q psy13302 2 ESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 2 kn~CFICgi~r~~fd~~~ 19 (88)
.|.|.+||-.|..+-+.+
T Consensus 21 ~nRC~~~GR~rg~iRkfg 38 (61)
T 2vqe_N 21 YTRCVRCGRARSVYRFFG 38 (61)
T ss_dssp CCCCTTTCCCTTCCTTTS
T ss_pred ceeeecCCCCceeeccCc
Confidence 689999999999887765
No 18
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=41.43 E-value=6 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=21.5
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+.+|.+.
T Consensus 57 V~Cf~C~~~L~~We~~DdP~~eH~r~ 82 (106)
T 2vm5_A 57 VQCFSCGGCLGNWEEGDDPWKEHAKW 82 (106)
T ss_dssp EEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEccccCCEecCCCCCCCHHHHHHHH
Confidence 47999999888888777788888864
No 19
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=40.08 E-value=6.5 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-|.+|.+.
T Consensus 61 V~Cf~C~~~L~~We~~DdP~~EH~r~ 86 (124)
T 1jd5_A 61 VRCFSCGGGLMDWNDNDEPWEQHALW 86 (124)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEecCCCCEecCCCCCCCHHHHHHHH
Confidence 48999999998888877888888875
No 20
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=38.87 E-value=8.2 Score=22.28 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=15.6
Q ss_pred CceeeeeCCCccccccCC
Q psy13302 2 ESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 2 kn~CFICgi~r~~fd~~~ 19 (88)
.|.|.+||-.|..+.+.+
T Consensus 17 ~nrC~~cGr~rg~iRkfg 34 (55)
T 2xzm_N 17 SKECRVCGARQGLITKYE 34 (55)
T ss_dssp GCCCTTTCCSSTTCCCSS
T ss_pred ceEeecCCCCcchHHHhC
Confidence 589999999999888765
No 21
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=38.72 E-value=7 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.1
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+.+|.+.
T Consensus 49 v~Cf~C~~~l~~We~~Ddp~~eH~r~ 74 (97)
T 3d9t_A 49 VKCFCCDGGLRCWESGDDPWVEHAKW 74 (97)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEecCcCCEecCCCCCCCHHHHHHHh
Confidence 48999999888788767788888765
No 22
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=37.25 E-value=7.6 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=21.9
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-|.+|.+.
T Consensus 61 V~Cf~C~~~L~~We~~DdP~~eH~r~ 86 (121)
T 1g73_C 61 VKCFHCGGGLTDWKPSEDPWEQHAKW 86 (121)
T ss_dssp EEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEcCcCCCCcCCCCCCCCHHHHHHHH
Confidence 48999999888888777888888875
No 23
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=36.36 E-value=8.1 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-|.+|.+.
T Consensus 83 V~Cf~C~~~L~~We~~DDP~~EH~r~ 108 (133)
T 2i3h_A 83 VRCFFCYGGLQSWKRGDDPWTEHAKW 108 (133)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEecccCCEeCCCCCCCCHHHHHHHH
Confidence 48999999988888877889888875
No 24
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=35.25 E-value=8.7 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=21.3
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+.+|.+.
T Consensus 47 v~Cf~C~~~l~~We~~DdP~~eH~r~ 72 (95)
T 3hl5_A 47 VKCFHCGGGLTDWKPSEDPWEQHAKW 72 (95)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEecCCCCCccCcCCCCCHHHHHHHH
Confidence 47999999888788777888888765
No 25
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=34.74 E-value=9 Score=25.20 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.8
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+.+|.+.
T Consensus 55 V~Cf~C~~~L~~We~~DdP~~EH~r~ 80 (122)
T 3mup_A 55 VKCFCCDGGLRCWESGDDPWVEHAKW 80 (122)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEecCcCCEecCCCCCCCHHHHHHHH
Confidence 47999999988888777888888775
No 26
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=32.98 E-value=9.8 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||..=...+....-+++|.+.
T Consensus 71 V~Cf~C~~~L~~We~~DdP~~EH~r~ 96 (136)
T 3siq_A 71 VKCFFCGVEIGSWEQEDQPVPEHQRW 96 (136)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEEeccCCEecCCCCCCCHHHHHHHH
Confidence 48999999988888777889998875
No 27
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=31.58 E-value=7.8 Score=18.59 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=6.6
Q ss_pred ceeeeeCCC
Q psy13302 3 SNCFICGIG 11 (88)
Q Consensus 3 n~CFICgi~ 11 (88)
..||.||-.
T Consensus 3 ~~Cf~CG~~ 11 (26)
T 1dsq_A 3 PVCFSCGKT 11 (26)
T ss_dssp CBCTTTCCB
T ss_pred CeeEeCCCC
Confidence 479999843
No 28
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=29.43 E-value=17 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.2
Q ss_pred ceeeeeCCCccccccCCC
Q psy13302 3 SNCFICGIGKDYFDKVPH 20 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~ 20 (88)
+.|.+||-.|..+.+.+.
T Consensus 19 ~rC~vcGr~~g~iRkfGL 36 (56)
T 3iz6_N 19 RVCRVCGNSHGLIRKYGL 36 (56)
T ss_dssp CCCSSCCCSCCCTTTTSC
T ss_pred ceeecCCCCcccccccCC
Confidence 789999999988877654
No 29
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.27 E-value=11 Score=19.07 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=9.5
Q ss_pred CceeeeeCCCcc
Q psy13302 2 ESNCFICGIGKD 13 (88)
Q Consensus 2 kn~CFICgi~r~ 13 (88)
+..||-||-.|.
T Consensus 19 r~~C~~C~~pr~ 30 (32)
T 2lk0_A 19 RLKCFRCGADKF 30 (32)
T ss_dssp CCBCTTTCCBTT
T ss_pred cceecCCCCcCC
Confidence 467999998775
No 30
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.77 E-value=17 Score=21.00 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.4
Q ss_pred ceeeeeCCCccccccCCC
Q psy13302 3 SNCFICGIGKDYFDKVPH 20 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~ 20 (88)
+.|.+||-.+..+.+.+.
T Consensus 19 ~rC~vcGr~~g~iRkfGL 36 (56)
T 3j20_P 19 RRCIRCGQYGPIIRIQGL 36 (56)
T ss_dssp CCCSSSCCSSSCCCTTTC
T ss_pred eEeecCCCCcccccccCC
Confidence 789999999988887764
No 31
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.50A {Shewanella loihica}
Probab=26.84 E-value=13 Score=23.62 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=3.5
Q ss_pred eeeeeCCCcc
Q psy13302 4 NCFICGIGKD 13 (88)
Q Consensus 4 ~CFICgi~r~ 13 (88)
.||.||..+.
T Consensus 17 ~cf~cg~~~~ 26 (160)
T 2prx_A 17 HCYGCGRNNE 26 (160)
T ss_dssp CSCC------
T ss_pred cccccCCCCc
Confidence 5999987644
No 32
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=25.96 E-value=12 Score=22.56 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=5.8
Q ss_pred ceeeeeCC
Q psy13302 3 SNCFICGI 10 (88)
Q Consensus 3 n~CFICgi 10 (88)
-+||-||-
T Consensus 5 VRCFTCGk 12 (66)
T 4ayb_N 5 IRCFTCGS 12 (66)
T ss_dssp SBCTTTCC
T ss_pred cccCCCcH
Confidence 36899973
No 33
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=25.37 E-value=14 Score=21.46 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=5.7
Q ss_pred ceeeeeCC
Q psy13302 3 SNCFICGI 10 (88)
Q Consensus 3 n~CFICgi 10 (88)
-+||-||-
T Consensus 4 VRCFTCGk 11 (55)
T 1ef4_A 4 VRCLSCGK 11 (55)
T ss_dssp SSCSCTTS
T ss_pred eecCCCCC
Confidence 46888873
No 34
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.32 E-value=24 Score=19.63 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=15.4
Q ss_pred ceeeeeCCCccccccCCCChH
Q psy13302 3 SNCFICGIGKDYFDKVPHGFD 23 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~ 23 (88)
.+|+.|+-.|..--....||.
T Consensus 26 ~kC~aC~~pkpg~~p~~~g~~ 46 (47)
T 2ebr_A 26 TKCLACESAKPGTKSGFKGFD 46 (47)
T ss_dssp SBCSSSCCBCCCCCSSCCCCC
T ss_pred ceecCcCCCCCCCccccccCC
Confidence 589999988876655556663
No 35
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=24.05 E-value=15 Score=17.92 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=6.8
Q ss_pred ceeeeeCCC
Q psy13302 3 SNCFICGIG 11 (88)
Q Consensus 3 n~CFICgi~ 11 (88)
.+||.||-.
T Consensus 7 ~~C~nCgk~ 15 (29)
T 1nc8_A 7 IRCWNCGKE 15 (29)
T ss_dssp CBCTTTSCB
T ss_pred CEEEECCcc
Confidence 479999754
No 36
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=23.24 E-value=17 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.4
Q ss_pred ceeeeeCCCccccccCC
Q psy13302 3 SNCFICGIGKDYFDKVP 19 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~ 19 (88)
+.|.+||-.|..+.+.+
T Consensus 19 ~rC~vcGr~~g~iRkfG 35 (56)
T 3u5c_d 19 RQCRVCSSHTGLIRKYG 35 (56)
T ss_dssp CCCTTTCCCSSEECGGG
T ss_pred ceeecCCCCcccccccC
Confidence 78999999998887765
No 37
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=22.85 E-value=22 Score=20.38 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=7.8
Q ss_pred hhccchhHHH
Q psy13302 28 QEHNLANYMF 37 (88)
Q Consensus 28 ~eHn~WnYl~ 37 (88)
--|.+|+|+|
T Consensus 38 ~L~~lgqyiy 47 (51)
T 1ceu_A 38 WLHSLGQHIY 47 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3488999987
No 38
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.99 E-value=17 Score=22.07 Aligned_cols=8 Identities=50% Similarity=1.331 Sum_probs=5.9
Q ss_pred ceeeeeCC
Q psy13302 3 SNCFICGI 10 (88)
Q Consensus 3 n~CFICgi 10 (88)
-+||-||-
T Consensus 5 VRCFTCGk 12 (70)
T 1twf_J 5 VRCFSCGK 12 (70)
T ss_dssp SBCTTTCC
T ss_pred eecCCCCC
Confidence 47999973
No 39
>2zjr_U 50S ribosomal protein L28; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.325.1.1 PDB: 2zjp_U 2zjq_U 3cf5_U* 3dll_U* 3pio_U* 3pip_U*
Probab=20.54 E-value=23 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=2.6
Q ss_pred CCceeeeeCCC
Q psy13302 1 MESNCFICGIG 11 (88)
Q Consensus 1 ~kn~CFICgi~ 11 (88)
|...|.|||-.
T Consensus 1 Msr~C~itGK~ 11 (81)
T 2zjr_U 1 MSRECYLTGKK 11 (81)
T ss_dssp -------CCSS
T ss_pred CCCEeecCCCc
Confidence 45578888754
No 40
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.13 E-value=29 Score=17.07 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=14.4
Q ss_pred CCceeeeeCCCccccccC
Q psy13302 1 MESNCFICGIGKDYFDKV 18 (88)
Q Consensus 1 ~kn~CFICgi~r~~fd~~ 18 (88)
|..+|..||-.-...|+.
T Consensus 2 m~~~C~~C~k~Vy~~Ek~ 19 (31)
T 1zfo_A 2 MNPNCARCGKIVYPTEKV 19 (31)
T ss_dssp CCCBCSSSCSBCCGGGCC
T ss_pred CCCcCCccCCEEecceeE
Confidence 567999999887777766
Done!