Query psy13302
Match_columns 88
No_of_seqs 100 out of 196
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 16:00:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dsxa1 g.41.5.1 (A:1-52) Rubr 68.0 0.47 3.4E-05 26.0 -0.1 15 4-18 38-52 (52)
2 d6rxna_ g.41.5.1 (A:) Rubredox 59.8 0.83 6E-05 24.3 -0.1 14 4-17 31-44 (45)
3 d1dx8a_ g.41.5.1 (A:) Rubredox 59.7 0.73 5.3E-05 26.7 -0.4 21 4-24 42-65 (70)
4 d1nnqa2 g.41.5.1 (A:135-171) R 53.1 1.2 8.5E-05 22.7 -0.2 15 3-17 21-35 (37)
5 d2qaln1 g.39.1.7 (N:1-100) Rib 51.4 2.7 0.0002 25.3 1.3 19 1-19 59-77 (100)
6 d2uubn1 g.39.1.7 (N:2-61) Ribo 49.5 2.5 0.00018 23.6 0.8 19 1-19 19-37 (60)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 48.6 5.3 0.00038 18.8 1.8 15 36-50 13-27 (27)
8 d1brfa_ g.41.5.1 (A:) Rubredox 48.1 1.9 0.00014 23.5 0.1 15 4-18 37-51 (53)
9 d1s24a_ g.41.5.1 (A:) Two-iron 47.3 2.6 0.00019 23.1 0.7 15 4-18 39-53 (56)
10 d1yuza2 g.41.5.1 (A:167-202) N 46.0 1.8 0.00013 21.9 -0.2 15 3-17 21-35 (36)
11 d1lkoa2 g.41.5.1 (A:148-191) R 45.5 2.2 0.00016 22.5 0.1 19 3-21 25-43 (44)
12 d1iroa_ g.41.5.1 (A:) Rubredox 44.7 1.9 0.00014 23.5 -0.2 15 4-18 38-52 (53)
13 d1i3oe_ g.52.1.1 (E:) BIR doma 43.6 2.6 0.00019 25.8 0.3 26 3-28 72-97 (111)
14 d1jd5a_ g.52.1.1 (A:) BIR doma 39.5 3.2 0.00023 25.0 0.2 40 3-46 48-87 (105)
15 d2vsla1 g.52.1.1 (A:250-345) B 39.1 3.2 0.00023 24.7 0.2 26 3-28 49-74 (96)
16 d1se0a_ g.52.1.1 (A:) BIR doma 37.4 3.7 0.00027 24.3 0.2 26 3-28 40-65 (97)
17 d2i3ha1 g.52.1.1 (A:78-167) BI 34.6 4.2 0.00031 23.7 0.2 26 3-28 45-70 (90)
18 d2qfaa1 g.52.1.1 (A:5-141) Ant 34.3 4.5 0.00033 25.4 0.3 48 3-56 51-98 (137)
19 d1nc8a_ g.40.1.1 (A:) HIV nucl 33.3 3.4 0.00024 20.0 -0.4 9 3-11 7-15 (29)
20 d3d9ta1 g.52.1.1 (A:260-346) 2 33.0 4.6 0.00034 23.4 0.2 26 3-28 39-64 (87)
21 d1dsqa_ g.40.1.1 (A:) Nucleic 32.1 3.5 0.00026 19.2 -0.4 9 3-11 3-11 (26)
22 d1n0za_ g.41.11.1 (A:) Znf265, 31.8 5.4 0.0004 20.9 0.3 13 2-14 30-42 (45)
23 d1ef4a_ a.4.11.1 (A:) RNA poly 24.2 7.1 0.00052 21.3 -0.1 8 3-10 4-11 (55)
24 d1iq8a1 c.1.20.1 (A:6-360) Arc 22.3 10 0.00076 26.8 0.4 56 4-61 275-331 (355)
25 d1twfj_ a.4.11.1 (J:) RNA poly 20.9 7.9 0.00057 21.7 -0.4 8 3-10 5-12 (65)
No 1
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=68.01 E-value=0.47 Score=26.02 Aligned_cols=15 Identities=47% Similarity=1.006 Sum_probs=13.2
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
.|-+||..|+.|+++
T Consensus 38 ~CP~C~a~K~~F~kk 52 (52)
T d2dsxa1 38 ACPVCGASKDAFEKQ 52 (52)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred CCcCCCCcHHHhccC
Confidence 699999999999874
No 2
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=59.78 E-value=0.83 Score=24.28 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=12.0
Q ss_pred eeeeeCCCcccccc
Q psy13302 4 NCFICGIGKDYFDK 17 (88)
Q Consensus 4 ~CFICgi~r~~fd~ 17 (88)
+|-+||..|+.|+.
T Consensus 31 ~CP~C~a~K~~F~P 44 (45)
T d6rxna_ 31 CCPVCGVSKDQFSP 44 (45)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCcCCCCcHHHccc
Confidence 68999999999874
No 3
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=59.66 E-value=0.73 Score=26.66 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=17.2
Q ss_pred eeeeeCCCccccccCC---CChHH
Q psy13302 4 NCFICGIGKDYFDKVP---HGFDT 24 (88)
Q Consensus 4 ~CFICgi~r~~fd~~~---~~F~~ 24 (88)
.|-+||..|+.|++.. -||+.
T Consensus 42 ~CP~Cga~K~~F~~~~~~~agf~~ 65 (70)
T d1dx8a_ 42 MCPACRSPKNQFKSIKKVIAGFAE 65 (70)
T ss_dssp BCTTTCCBGGGEEECCCBCCCSCC
T ss_pred CCcCCCCcHHHheEcccccCChHH
Confidence 6999999999998873 67753
No 4
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=53.10 E-value=1.2 Score=22.72 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.7
Q ss_pred ceeeeeCCCcccccc
Q psy13302 3 SNCFICGIGKDYFDK 17 (88)
Q Consensus 3 n~CFICgi~r~~fd~ 17 (88)
.+|-|||..++.|.+
T Consensus 21 ~~CPvCg~~~~~F~~ 35 (37)
T d1nnqa2 21 EYCPVCGAPKEKFVV 35 (37)
T ss_dssp SBCTTTCCBGGGSEE
T ss_pred CcCCCCCCcHHHcEE
Confidence 479999999998875
No 5
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
Probab=51.44 E-value=2.7 Score=25.26 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCceeeeeCCCccccccCC
Q psy13302 1 MESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 1 ~kn~CFICgi~r~~fd~~~ 19 (88)
+.|.|++||-.|..+-+-+
T Consensus 59 irnRC~~TGR~Rg~~r~f~ 77 (100)
T d2qaln1 59 QRNRCRQTGRPHGFLRKFG 77 (100)
T ss_dssp CCCCCSSSCCSSSCBTTTT
T ss_pred HHhhhccCCCcceeecccc
Confidence 4799999999998876654
No 6
>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
Probab=49.52 E-value=2.5 Score=23.58 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCceeeeeCCCccccccCC
Q psy13302 1 MESNCFICGIGKDYFDKVP 19 (88)
Q Consensus 1 ~kn~CFICgi~r~~fd~~~ 19 (88)
+.|.|.+||-.|..+-+-+
T Consensus 19 ~~NRC~~tGR~Rg~~r~F~ 37 (60)
T d2uubn1 19 AYTRCVRCGRARSVYRFFG 37 (60)
T ss_dssp CCCCCTTTCCCSSBCTTTS
T ss_pred cceeccCCCCCceeecccc
Confidence 4699999999998876653
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=48.63 E-value=5.3 Score=18.78 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=13.0
Q ss_pred HHHHHHhccCCCCCC
Q psy13302 36 MFFLMHLINKPDTEF 50 (88)
Q Consensus 36 l~fi~yL~~K~~~e~ 50 (88)
+||.+|-+-|.++|.
T Consensus 13 lf~aayqqykrpnel 27 (27)
T d2e74g1 13 LFYAAYQQYKRPNEL 27 (27)
T ss_dssp HHHHHHHHTTSCCCT
T ss_pred HHHHHHHHhcCCCCC
Confidence 689999999999874
No 8
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=48.13 E-value=1.9 Score=23.48 Aligned_cols=15 Identities=47% Similarity=0.908 Sum_probs=12.8
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
.|-+||..|+.|++.
T Consensus 37 ~CP~C~a~K~~F~~~ 51 (53)
T d1brfa_ 37 VCPICGAPKSEFEKL 51 (53)
T ss_dssp BCTTTCCBGGGEEES
T ss_pred CCcCCCCcHHHceEc
Confidence 689999999999864
No 9
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=47.32 E-value=2.6 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.1
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
.|-+||..|+.|+..
T Consensus 39 ~CP~C~a~K~~F~~~ 53 (56)
T d1s24a_ 39 CCPDCGATKEDYVLY 53 (56)
T ss_dssp CCSSSCCCGGGEEEC
T ss_pred CCcCCCCcHHHceEc
Confidence 699999999999864
No 10
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=46.02 E-value=1.8 Score=21.91 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.0
Q ss_pred ceeeeeCCCcccccc
Q psy13302 3 SNCFICGIGKDYFDK 17 (88)
Q Consensus 3 n~CFICgi~r~~fd~ 17 (88)
.+|-|||..++.|..
T Consensus 21 e~CPvCg~~~~~F~~ 35 (36)
T d1yuza2 21 EKCPICFRPKDTFTA 35 (36)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CcCCCCCCcHHHcCc
Confidence 479999999888853
No 11
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=45.47 E-value=2.2 Score=22.50 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.3
Q ss_pred ceeeeeCCCccccccCCCC
Q psy13302 3 SNCFICGIGKDYFDKVPHG 21 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~ 21 (88)
.+|-+||-.++.|+.....
T Consensus 25 ~~CPvC~~p~~~Fe~~~en 43 (44)
T d1lkoa2 25 ELCPACAHPKAHFELLGIN 43 (44)
T ss_dssp SBCTTTCCBGGGEEECCCC
T ss_pred CcCCCCCCcHHHHeecccC
Confidence 4799999999999876543
No 12
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=44.66 E-value=1.9 Score=23.45 Aligned_cols=15 Identities=53% Similarity=1.256 Sum_probs=12.7
Q ss_pred eeeeeCCCccccccC
Q psy13302 4 NCFICGIGKDYFDKV 18 (88)
Q Consensus 4 ~CFICgi~r~~fd~~ 18 (88)
.|-+||..|+.|++.
T Consensus 38 ~CP~C~a~K~~F~~i 52 (53)
T d1iroa_ 38 VCPLCGVGKDQFEEV 52 (53)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred CCcCCCCcHHHcEEC
Confidence 699999999999753
No 13
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.58 E-value=2.6 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=21.5
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+.+|.+.
T Consensus 72 v~Cf~C~~~l~~W~~~DdP~~eH~r~ 97 (111)
T d1i3oe_ 72 VQCFACGGKLKNWEPGDRAWSEHRRH 97 (111)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHH
T ss_pred EEeCcCCCEeCCCCCCCCHHHHHHHH
Confidence 37999999988888777778888764
No 14
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=39.50 E-value=3.2 Score=24.99 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=28.1
Q ss_pred ceeeeeCCCccccccCCCChHHHhhhhccchhHHHHHHHhccCC
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKP 46 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~eHn~WnYl~fi~yL~~K~ 46 (88)
-+||-||+.=...+....-+++|.+..= .--|+..++.++
T Consensus 48 v~Cf~C~~~l~~W~~~D~p~~eH~~~~P----~C~fv~~~k~~~ 87 (105)
T d1jd5a_ 48 VRCFSCGGGLMDWNDNDEPWEQHALWLS----QCRFVKLMKGQL 87 (105)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHHCT----TCHHHHHHHCHH
T ss_pred EEeCccCCCccCCCCCCCHHHHHHHHCc----CCcchhhhCCHH
Confidence 4799999998888877788999977522 234565555433
No 15
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.14 E-value=3.2 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=22.2
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+++|.+.
T Consensus 49 v~Cf~C~~~l~~W~~~D~P~~eH~~~ 74 (96)
T d2vsla1 49 VKCFHCGGGLTDWKPSEDPWEQHAKW 74 (96)
T ss_dssp EEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEeccCCCEeCCCCCCCCHHHHHHHH
Confidence 47999999988888888889999875
No 16
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.36 E-value=3.7 Score=24.35 Aligned_cols=26 Identities=19% Similarity=0.554 Sum_probs=21.0
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+.+|.+.
T Consensus 40 v~C~~C~~~l~~W~~~D~p~~eH~r~ 65 (97)
T d1se0a_ 40 VKCFFCGVEIGSWEQEDQPVPEHQRW 65 (97)
T ss_dssp EEETTTCCEEESCCTTCCHHHHHHHH
T ss_pred EEeCcCCCCcCCCCCCCCHHHHHHHH
Confidence 47999999888787776778888865
No 17
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.61 E-value=4.2 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.0
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+....-+.+|.+.
T Consensus 45 v~C~~C~~~l~~W~~~Ddp~~eH~r~ 70 (90)
T d2i3ha1 45 VRCFFCYGGLQSWKRGDDPWTEHAKW 70 (90)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEeccCCCEeCCCCCCCCHHHHHHHH
Confidence 47999999988888888888888865
No 18
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.29 E-value=4.5 Score=25.43 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=32.3
Q ss_pred ceeeeeCCCccccccCCCChHHHhhhhccchhHHHHHHHhccCCCCCCChhhHH
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETY 56 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~eHn~WnYl~fi~yL~~K~~~e~tg~E~y 56 (88)
-+||-||..=...+....-|..|.+..=+ ..|+ ...|...+.+-.|..
T Consensus 51 v~Cf~C~~~l~~We~~DdP~~eH~~~~p~----C~fv--~~~k~~~~~~~~e~l 98 (137)
T d2qfaa1 51 AQCFFCFKELEGWEPDDDPIEEHKKHSSG----CAFL--SVKKQFEELTLGEFL 98 (137)
T ss_dssp EEETTTCCEECCCCTTCCHHHHHHHHCTT----CGGG--GCCSCGGGCBHHHHH
T ss_pred EEecccCCCcCCCCCCCCHHHHHHHHCcC----CceE--eeeCCCccchHHHHH
Confidence 47999999888888877889999876332 2233 234566666655554
No 19
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=33.29 E-value=3.4 Score=19.99 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=6.6
Q ss_pred ceeeeeCCC
Q psy13302 3 SNCFICGIG 11 (88)
Q Consensus 3 n~CFICgi~ 11 (88)
-+||-||-+
T Consensus 7 ikCfNCGke 15 (29)
T d1nc8a_ 7 IRCWNCGKE 15 (29)
T ss_dssp CBCTTTSCB
T ss_pred eEeecCCcc
Confidence 379999853
No 20
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.05 E-value=4.6 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.8
Q ss_pred ceeeeeCCCccccccCCCChHHHhhh
Q psy13302 3 SNCFICGIGKDYFDKVPHGFDTHVQQ 28 (88)
Q Consensus 3 n~CFICgi~r~~fd~~~~~F~~Hi~~ 28 (88)
-+||-||+.=...+.....+.+|.+.
T Consensus 39 v~C~~C~~~l~~W~~~Ddp~~eH~~~ 64 (87)
T d3d9ta1 39 VKCFCCDGGLRCWESGDDPWVEHAKW 64 (87)
T ss_dssp EEETTTCCEEECCCTTCCHHHHHHHH
T ss_pred EEeCcCCCEecCcCCCCcchHHHHHH
Confidence 47999999988888887888888774
No 21
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=32.14 E-value=3.5 Score=19.23 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=6.5
Q ss_pred ceeeeeCCC
Q psy13302 3 SNCFICGIG 11 (88)
Q Consensus 3 n~CFICgi~ 11 (88)
-.||-||-+
T Consensus 3 pvcfscgkt 11 (26)
T d1dsqa_ 3 PVCFSCGKT 11 (26)
T ss_dssp CBCTTTCCB
T ss_pred CEEEecCCc
Confidence 369999854
No 22
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.83 E-value=5.4 Score=20.89 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=10.3
Q ss_pred CceeeeeCCCccc
Q psy13302 2 ESNCFICGIGKDY 14 (88)
Q Consensus 2 kn~CFICgi~r~~ 14 (88)
+..||-||-.|..
T Consensus 30 R~~C~rC~~~r~~ 42 (45)
T d1n0za_ 30 RTSCDRCGREKTT 42 (45)
T ss_dssp CSBCSSSCCBCCC
T ss_pred cCcccCCCCcCCC
Confidence 4689999988864
No 23
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.16 E-value=7.1 Score=21.30 Aligned_cols=8 Identities=38% Similarity=1.124 Sum_probs=5.8
Q ss_pred ceeeeeCC
Q psy13302 3 SNCFICGI 10 (88)
Q Consensus 3 n~CFICgi 10 (88)
-+||-||-
T Consensus 4 VRCFTCGk 11 (55)
T d1ef4a_ 4 VRCLSCGK 11 (55)
T ss_dssp SSCSCTTS
T ss_pred cCcCCCch
Confidence 36899974
No 24
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.34 E-value=10 Score=26.76 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=32.3
Q ss_pred eeeee-CCCccccccCCCChHHHhhhhccchhHHHHHHHhccCCCCCCChhhHHHHHHH
Q psy13302 4 NCFIC-GIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMY 61 (88)
Q Consensus 4 ~CFIC-gi~r~~fd~~~~~F~~Hi~~eHn~WnYl~fi~yL~~K~~~e~tg~E~yV~~~i 61 (88)
.|++| ..+|..+-.--..=+...-.-||++.|.-++.-++.-=...- .+.||.++.
T Consensus 275 ~C~~C~~~srayl~HL~~~~e~~LltiHNl~~~~~l~~~iR~aI~~g~--f~~~~e~~~ 331 (355)
T d1iq8a1 275 SCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKEGE--LWRLVDERA 331 (355)
T ss_dssp CSTTTTTCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CCccccccCHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 58888 355554433211101234456999999999988875432222 566666654
No 25
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.90 E-value=7.9 Score=21.75 Aligned_cols=8 Identities=50% Similarity=1.331 Sum_probs=5.8
Q ss_pred ceeeeeCC
Q psy13302 3 SNCFICGI 10 (88)
Q Consensus 3 n~CFICgi 10 (88)
-+||-||-
T Consensus 5 VRCFTCgk 12 (65)
T d1twfj_ 5 VRCFSCGK 12 (65)
T ss_dssp SBCTTTCC
T ss_pred cccCCCCc
Confidence 36899963
Done!