RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13302
         (88 letters)



>gnl|CDD|165125 PHA02758, PHA02758, hypothetical protein; Provisional.
          Length = 321

 Score = 27.7 bits (61), Expect = 0.79
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 11/44 (25%)

Query: 32  LANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCF 75
            AN MF ++HL ++           +   Y+    D F +G  F
Sbjct: 220 FANAMFAILHLPSR-----------LAAGYKMTGSDLFAIGIAF 252


>gnl|CDD|226587 COG4102, COG4102, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 418

 Score = 27.1 bits (60), Expect = 1.2
 Identities = 10/32 (31%), Positives = 10/32 (31%)

Query: 21  GFDTHVQQEHNLANYMFFLMHLINKPDTEFTG 52
           GFDTH  Q          L  L    D   T 
Sbjct: 277 GFDTHANQNDAQGRLATQLGGLDAALDAFETE 308


>gnl|CDD|132432 TIGR03391, FeS_syn_CsdE, cysteine desulfurase, sulfur acceptor
          subunit CsdE.  Members of this protein family are CsdE,
          formerly called YgdK. This protein, found as a paralog
          to SufE in Escherichia coli, Yersinia pestis,
          Photorhabdus luminescens, and related species, works
          together and physically interacts with CsdA (a paralog
          of SufS). CsdA has cysteine desulfurase activity that
          is enhanced by this protein (CsdE), in which Cys-61
          (numbered as in E. coli) is a sulfur acceptor site.
          This gene pair, although involved in FeS cluster
          biosynthesis, is not found next to other such genes as
          are its paralogs from the Suf or Isc systems
          [Biosynthesis of cofactors, prosthetic groups, and
          carriers, Other].
          Length = 138

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 22 FDTHVQQEHN------LANYMFFLMHLINKPDTEFTGQETYVWNMYQ 62
          F    Q E        LA  +  L   +    TE TG E  VW  +Q
Sbjct: 19 FAACRQWEDRYRQLILLAKQLPALPEALKTQATELTGCENRVWLGHQ 65


>gnl|CDD|222722 pfam14381, EDR1, Ethylene-responsive protein kinase Le-CTR1.
          EDR1 regulates disease resistance and ethylene-induced
          senescence, and is also involved in stress response
          signalling and cell death regulation.
          Length = 203

 Score = 25.6 bits (57), Expect = 3.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 13 DYFDKVPHGF 22
           Y DK+P GF
Sbjct: 18 SYDDKIPDGF 27


>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein;
          Provisional.
          Length = 395

 Score = 25.0 bits (55), Expect = 5.6
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 39 LMHLINKPDTEFT-GQETYVWNMYQQRCWDF 68
          LM++ N+PD  FT G+ +++++   +R  DF
Sbjct: 11 LMYITNRPDIVFTHGKGSWLYDHNGKRYLDF 41


>gnl|CDD|193568 cd08022, M28_PSMA_like, M28 Zn-peptidase prostate-specific membrane
           antigen.  Peptidase M28 family; prostate-specific
           membrane antigen (PSMA, also called glutamate
           carboxypeptidase II or GCP-II)-like subfamily. PSMA is a
           homodimeric type II transmembrane protein containing
           three distinct domains: protease-like, apical or
           protease-associated (PA) and helical domains. The
           protease-like domain is a large extracellular portion
           (ectodomain). PSMA is over-expressed predominantly in
           prostate cancer (PCa) as well as neovasculature of most
           solid tumors, but not in the vasculature of the normal
           tissues.  PSMA is considered a biomarker for PCa and
           possibly for use as an imaging and therapeutic target.
           The extracellular domain of PSMA possesses two unique
           enzymatic functions: N-acetylated, alpha-linked acidic
           dipeptidase (NAALADase) which cleaves terminal glutamate
           from the neurodipeptide N-acetyl-aspartyl-glutamate
           (NAAG), and folate hydrolase (FOLH) which cleaves the
           terminal glutamates from gamma-linked polyglutamates
           (carboxypeptidase). A mutation in this gene may be
           associated with impaired intestinal absorption of
           dietary folates, resulting in low blood folate levels
           and consequent hyperhomocysteinemia. Expression of this
           protein in the brain may be involved in a number of
           pathological conditions associated with glutamate
           excitotoxicity. This gene likely arose from a
           duplication event of a nearby chromosomal region.
           Alternative splicing gives rise to multiple transcript
           variants.
          Length = 286

 Score = 24.9 bits (55), Expect = 6.0
 Identities = 6/40 (15%), Positives = 9/40 (22%)

Query: 21  GFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNM 60
           G          L   +      +  PD   + Q  Y    
Sbjct: 161 GSTLRASASPLLHKLIREAAKKVPDPDKGGSSQYLYDSWE 200


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.144    0.497 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,512,677
Number of extensions: 343830
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 8
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)