RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13302
         (88 letters)



>3tix_B Chromo domain-containing protein 1; PIN, rossmann fold, SPOC,
           alpha-helical hairpin, heterochrom silencing, RITS,
           RNAI, argonaute; 2.90A {Schizosaccharomyces pombe}
          Length = 458

 Score = 25.1 bits (54), Expect = 3.6
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 27  QQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQR 64
           Q+++      F L+H +    T   G +   ++ +++ 
Sbjct: 413 QKKNYDKYRRFVLIHELKNELTPVNGLDIVDYDEFKET 450


>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur
          protein, oxidoreductase, ELE transfer, electron
          transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas
          aeruginosa}
          Length = 55

 Score = 22.9 bits (50), Expect = 7.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 5  CFICGIGKDYFDKV 18
          C  CG+GK  F+ +
Sbjct: 39 CPDCGVGKIDFEMI 52


>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A
          {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A
          1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A
          1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A
          1smw_A 1be7_A 1t9o_A ...
          Length = 54

 Score = 22.9 bits (50), Expect = 8.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 5  CFICGIGKDYFDKV 18
          C +CG+GKD F++V
Sbjct: 39 CPLCGVGKDEFEEV 52


>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans}
          SCOP: g.41.5.1
          Length = 87

 Score = 23.6 bits (51), Expect = 8.5
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 5  CFICGIGKDYFDKV 18
          C  CG  K+ +   
Sbjct: 71 CPDCGATKEDYVLY 84


>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle
          structural genomics center for infectious electron
          transport, iron; NMR {Mycobacterium tuberculosis}
          Length = 81

 Score = 23.2 bits (50), Expect = 9.1
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 5  CFICGIGKDYFDKV 18
          C  CG  K  F+ V
Sbjct: 63 CPDCGAAKSDFEMV 76


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.144    0.497 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,421,592
Number of extensions: 65461
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 10
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)