RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13302
         (88 letters)



>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
           [TaxId: 562]}
          Length = 428

 Score = 24.8 bits (53), Expect = 1.6
 Identities = 11/75 (14%), Positives = 15/75 (20%), Gaps = 3/75 (4%)

Query: 1   MESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNM 60
           +  N     I  D FD            E           + IN        Q  Y +  
Sbjct: 173 LGGNIETVAIDGD-FDACQALVKQAFDDEELKVALGLNSANSINISR--LLAQICYYFEA 229

Query: 61  YQQRCWDFFPVGDCF 75
             Q   +        
Sbjct: 230 VAQLPQETRNQLVVS 244


>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
           domain {Propionibacterium freudenreichii shermanii
           [TaxId: 1752]}
          Length = 303

 Score = 24.5 bits (52), Expect = 2.3
 Identities = 8/50 (16%), Positives = 13/50 (26%)

Query: 4   NCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQ 53
              I  I   Y  K       H        + M  +   ++  DT  +  
Sbjct: 193 YDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSM 242


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 24.2 bits (52), Expect = 3.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 17  KVPHGFDTHVQQEHNLANYMFFLMHLI 43
           ++P+ +   + Q  ++ NYM  L H+I
Sbjct: 697 RLPNLYSVIMTQADHVYNYMTQLTHII 723


>d1jwqa_ c.56.5.6 (A:) N-acetylmuramoyl-L-alanine amidase CwlV
           {Paenibacillus polymyxa [TaxId: 1406]}
          Length = 179

 Score = 23.6 bits (50), Expect = 4.5
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 25  HVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFF 69
            V+   NL   +F  +H  +   +   G ETY      +   +  
Sbjct: 64  RVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSASKAFANVM 108


>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 53

 Score = 22.3 bits (48), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 5  CFICGIGKDYFDKV 18
          C ICG  K  F+K+
Sbjct: 38 CPICGAPKSEFEKL 51


>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum
          [TaxId: 1501]}
          Length = 53

 Score = 22.0 bits (47), Expect = 6.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 5  CFICGIGKDYFDKV 18
          C +CG+GKD F++V
Sbjct: 39 CPLCGVGKDQFEEV 52


>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
          879]}
          Length = 52

 Score = 21.6 bits (46), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 5  CFICGIGKDYFDK 17
          C +CG  KD F+K
Sbjct: 39 CPVCGASKDAFEK 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.497 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,830
Number of extensions: 15052
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 13
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)