BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13304
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
Length = 191
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEERIQTLMGRLTDGSPRTGQIFKQTYSKFDTNSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ +D+T A+++ I
Sbjct: 152 NDDALLKNYGLLYCFRRDMTYVATYLRI 179
>pdb|3HHR|A Chain A, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
Length = 190
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1HWG|A Chain A, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
Length = 191
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 191
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S ++ +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSNVYDLLKDLEERIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1HGU|A Chain A, Human Growth Hormone
Length = 191
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S D+ +L +L++ + T+M + +G+ G KQ ++
Sbjct: 92 FLRSVFANSLVYGASDSDVYDLLKDLEEGIQTLMGRLEDGSPRTGQAFKQTYAKFDANSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ KD+ +F+ I
Sbjct: 152 NDDALLKNYGLLYCFRKDMDKVETFLRI 179
>pdb|1Z7C|A Chain A, Crystal Structure Of Human Placental Lactogen
Length = 191
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 55 FLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAA 114
FL S + L +S D +L +L++ + T+M + +G+ G I KQ ++
Sbjct: 92 FLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSH 151
Query: 115 NVELILKYFD-MFLKLKDLTSSASFMEI 141
N + +LK + ++ KD+ +F+ +
Sbjct: 152 NHDALLKNYGLLYCFRKDMDKVETFLRM 179
>pdb|2WST|A Chain A, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|B Chain B, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|C Chain C, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|D Chain D, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|E Chain E, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|F Chain F, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
Length = 208
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 78 LNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKL-KDLTSSA 136
+NL D +LS E N+V G+ G + DTLV AN + ++ + +L + LTSS
Sbjct: 92 MNLYFDADGNVLS--ESNLVRGSWGMKDQDTLVTPIANGQYLMPNLTAYPRLIQTLTSSY 149
Query: 137 SFME--IDINNE 146
+ + +D NN
Sbjct: 150 IYTQAHLDHNNS 161
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 37 NQQALAHSRLWDAVGGFLFLFSHMQDKLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNV 96
N A A R + G F F + L+ + Q D++ LL ++ + +GN
Sbjct: 120 NVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGN- 178
Query: 97 VNGTIGKQMVDTLVESAANVELILKYFDMFLK 128
T+ +V SA N+ L+ +D L+
Sbjct: 179 ---TVLHALVXISDNSAENIALVTSXYDGLLQ 207
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 3 LIDPAGKANFFKAIGVASQVFNTLSEVIQ 31
+I P G ANF +A+ + ++V++ L VI+
Sbjct: 169 MILPVGAANFREAMRIGAEVYHNLKNVIK 197
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 3 LIDPAGKANFFKAIGVASQVFNTLSEVIQ 31
+I P G ANF +A+ + ++V++ L VI+
Sbjct: 168 MILPVGAANFREAMRIGAEVYHNLKNVIK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,487
Number of Sequences: 62578
Number of extensions: 154091
Number of successful extensions: 422
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 14
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)