RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13304
(205 letters)
>gnl|CDD|219849 pfam08454, RIH_assoc, RyR and IP3R Homology associated. This
eukaryotic domain is found in ryanodine receptors (RyR)
and inositol 1,4,5-trisphosphate receptors (IP3R) which
together form a superfamily of homotetrameric
ligand-gated intracellular Ca2+ channels. There seems to
be no known function for this domain. Also see the
IP3-binding domain pfam01365 and pfam02815.
Length = 109
Score = 63.0 bits (154), Expect = 3e-13
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 3 LIDPAGKANFFKAIGVASQVFNTLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLF 57
L+ GK K + Q +TL+E+IQGPC +NQ AL S+ D L
Sbjct: 53 LLTLLGKNINKKNYELIVQCLDTLTELIQGPCHENQIALCESKFLDIATDLLQKK 107
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 30.1 bits (67), Expect = 0.41
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 155 KEKMEQQKSYTPLREYLVERKRRREVMKKRKGEEEVERETKAIP 198
+ + +QKSY Y R+ RE + R E RE K I
Sbjct: 8 RSREREQKSYKNENSYREYRETSRERSRDRTERER-SREHKIIS 50
>gnl|CDD|206240 pfam14070, YjfB_motility, Putative motility protein. This family
of proteins is regulated in B. subtilis by SigD, and is
likely to be involved in motility or flagellin
production, Proteins in this family are approximately 60
amino acids in length, and contain two highly conserved
asparagine residues.
Length = 57
Score = 28.3 bits (64), Expect = 0.46
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 70 QVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLV 110
+ +LK ++ Q+ +L M+ V +G +D
Sbjct: 18 SIAVLKKAMDTQEQSAAQLLQMMPQASVPPNLG-GNIDVKA 57
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 28.8 bits (65), Expect = 0.53
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 152 KDFKEKMEQQKSYTPLR-EYLVERKRRREVMKKRKGEEEVERETKAI 197
KD +E+ EQ + R E ERK R E +KRK +E K I
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRK--RAIEERRKKI 84
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 29.2 bits (66), Expect = 0.90
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 130 KDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPLREYLVERKRRREVMKKRKGEEE 189
+D + D+++ +V PK+ K ++ + E+++ ++ K+ E+
Sbjct: 3 EDYLDMLRRLGKDLHDAHYVCPKNLKAAHDR---AVAKYQAKKEKEKAEKMRKRYPELEK 59
Query: 190 VERETKA 196
+ RE K+
Sbjct: 60 IFRELKS 66
>gnl|CDD|224294 COG1376, ErfK, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 232
Score = 29.1 bits (65), Expect = 1.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 124 DMFLKLKDLTSSASFMEIDINNEGWVYPKDFK-EKMEQQKSYTPLREYLVERKRRREVMK 182
L L D + +A + I EG +P K + ++ ++TP E++V K+ M
Sbjct: 100 LRLLYLVDDSGTAQRYPVGIGKEGLDWPGTAKVSRGKEGPTWTPTGEFIVREKKGGFYMP 159
Query: 183 KR 184
Sbjct: 160 NS 161
>gnl|CDD|226071 COG3541, COG3541, Predicted nucleotidyltransferase [General
function prediction only].
Length = 248
Score = 28.9 bits (65), Expect = 1.5
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 151 PKDFKEKMEQQKSYTPLREY---LVERKRRREVMKKRKGEEEVERETKA 196
P DF+E ++Q PLREY L ERK+R + K K + + R +A
Sbjct: 162 PMDFEELLDQTLLPYPLREYIQELAERKKRIDESDKGKIHKAIARLGEA 210
>gnl|CDD|215275 PLN02498, PLN02498, omega-3 fatty acid desaturase.
Length = 450
Score = 28.3 bits (63), Expect = 3.1
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 126 FLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPLREYLVERKRRREVMKKRK 185
K + L SS S+ + + +E+ PL E + E +
Sbjct: 31 LSKFRFLPSSKSYKRLPFDLFSRGC---SRERNWALNVSAPLTVPSGEEEEDEEGVNGVG 87
Query: 186 GEEEVERETKAIPPF 200
+EE E + A PPF
Sbjct: 88 EDEEGEFDPGAPPPF 102
>gnl|CDD|232843 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
B subunit. The heterotrimer GatABC is responsible for
transferring the NH2 group that converts Glu to Gln, or
Asp to Asn after the Glu or Asp has been ligated to the
tRNA for Gln or Asn, respectively. In Lactobacillus,
GatABC is responsible only for tRNA(Gln). In the
Archaea, GatABC is responsible only for tRNA(Asn), while
GatDE is responsible for tRNA(Gln). In lineages that
include Thermus, Chlamydia, or Acidithiobacillus, the
GatABC complex catalyzes both [Protein synthesis, tRNA
aminoacylation].
Length = 478
Score = 27.8 bits (62), Expect = 4.7
Identities = 7/42 (16%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 70 QVDLLKILLNLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVE 111
Q+ L + L+ + ++ +++ ++G KQ+++ ++E
Sbjct: 361 QISLAE--CGLKPSDLAELIKLIKEGKISGKSAKQLIEEMLE 400
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 27.7 bits (62), Expect = 5.2
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 3 LIDPAGKANFFKAIGVASQVFNTLSEVIQG 32
+I P G +F +A+ + ++VF+ L ++++
Sbjct: 163 MIMPVGAPSFREALRMGAEVFHALKKLLKE 192
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 27.3 bits (60), Expect = 6.6
Identities = 14/72 (19%), Positives = 29/72 (40%)
Query: 124 DMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKMEQQKSYTPLREYLVERKRRREVMKK 183
D KD S + + + EG + +DF + E+ K + +E + K
Sbjct: 227 DDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVK 286
Query: 184 RKGEEEVERETK 195
++ + + E E +
Sbjct: 287 KEADSKPEEEDE 298
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family of
sequences found in both bacteria and bacteriophages.
This region is approximately 130 residues long and in
some cases is found as part of the PVL (Panton-Valentine
leukocidin) group of genes, which encode a member of the
leukocidin group of bacterial toxins that kill
leukocytes by creation of pores in the cell membrane.
PVL appears to be a virulence factor associated with a
number of human diseases.
Length = 118
Score = 26.3 bits (58), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 152 KDFKEKMEQQKSYTPLREYLVERKRRREVMKKRK 185
K+++E + + +E +ERKRR+E +RK
Sbjct: 52 KEYREIKKSENIEQERKERELERKRRKEAELRRK 85
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 27.3 bits (61), Expect = 7.0
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 162 KSYTP--LREYLVERKRRREVMKKRKGEEEVERETKAIPPFI 201
K Y P REY++ER + R K R + + E K I
Sbjct: 72 KDYEPDLYREYIMERFKERGTGKGRP-VPKPKFEFKKEKKVI 112
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 27.1 bits (60), Expect = 8.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 151 PKDFKEKM---EQQKSYTPLREYL-------VERKRRREVMKKRKGEEEVERETKAIPPF 200
P+D ++K+ E K+ LR++L V+R R ++ + EEE + +
Sbjct: 365 PEDLRDKIATEEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEG 424
Query: 201 I 201
Sbjct: 425 F 425
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 26.9 bits (59), Expect = 9.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 143 INNEGWVYPKDFKEKMEQQKSYTPLREYLVERKRRREVMKKRKGEEEVERET 194
I+ W ++ K+ + Q P E VER R+ + ++ EE ++E
Sbjct: 406 ISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
>gnl|CDD|197803 smart00609, VIT, Vault protein Inter-alpha-Trypsin domain.
Length = 130
Score = 25.8 bits (57), Expect = 9.6
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 97 VNGTIGKQMVDTLVESAA---NVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVYPKD 153
VN + + T+V S V FD+ L T+ S + I+ G Y +
Sbjct: 22 VNSKVTSRFAHTVVTSRVVNRAVPAQEVTFDVEL---PKTAFISNFAMTID--GKTYVGE 76
Query: 154 FKEKMEQQKSY 164
KEK QK Y
Sbjct: 77 IKEKEVAQKQY 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,259,516
Number of extensions: 945974
Number of successful extensions: 1237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 54
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)