RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13304
(205 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-06
Identities = 43/236 (18%), Positives = 78/236 (33%), Gaps = 59/236 (25%)
Query: 6 PAGKANFFKAIGVASQV---FN-TLSEVIQGPCTQNQQALAHSRLWDAVGGFLFLFSHMQ 61
P A+FF +ASQ+ FN L E +G ++ + + VG FL S +
Sbjct: 23 PT--ASFF----IASQLQEQFNKILPEPTEGFAADDEPT---TPA-ELVGKFLGYVSSLV 72
Query: 62 DKLSKHSSQVDLLKILLN-LQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAANVELIL 120
+ SK +L + L + LEGN ++ K + + ELI
Sbjct: 73 EP-SKVGQFDQVLNLCLTEFENCY-------LEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 121 KYFDMFLKLKD---------LTSSASFMEIDI--------NNEGWVYPKDFKEKMEQQKS 163
Y + K L + + N + + F+E + ++
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-----FEELRDLYQT 179
Query: 164 YTPLREYLVERKRRR--EVMKKRKGEEEVE----------RETKAIPP--FIATCP 205
Y L L++ E+++ E+V P ++ + P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Score = 34.3 bits (78), Expect = 0.030
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 86/200 (43%)
Query: 18 VASQVFNTLSEVI-----QGP-----CTQNQQ-AL-AHSRLWDAVGGFLFLFSHMQDKLS 65
++F ++E + TQ Q AL + A F ++ K
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK---A------AFEDLKSKGL 1752
Query: 66 K--------HS----------SQV----DLLKIL--------LNLQKDMITM----MLSM 91
HS + V L++++ + + +D + M+++
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 92 LEGNVVNGTIGKQMVDTLVE----------SAAN----------------VEL---ILKY 122
G V ++ + +VE N ++ +L +
Sbjct: 1813 NPGRVAAS-FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 123 FD-MFLKLKDLTSSASFMEI 141
+ + +L S S E+
Sbjct: 1872 IKLQKIDIIELQKSLSLEEV 1891
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-05
Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 26/153 (16%)
Query: 59 HMQDKLS--KHSSQVDLLKILL-NLQKDMITMMLSMLEGNVVNGTIGKQMVDTLVESAAN 115
HM + ++ + D+L + + + + ++ + K+ +D ++ S
Sbjct: 6 HMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDA 60
Query: 116 VELILKYFDMFLKLKDLTSSASFME-IDINNEGWVY---------PKDFKEKMEQQKSYT 165
V L+ F L K F+E + N ++ P +Q+
Sbjct: 61 VSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 166 -----PLREYLVERKRRREVMKKRKGEEEVERE 193
+Y V R + +K R+ E+
Sbjct: 120 YNDNQVFAKYNVSRL--QPYLKLRQALLELRPA 150
Score = 29.1 bits (64), Expect = 1.1
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 31/155 (20%)
Query: 63 KLSKHSSQVDLLKILLNLQKDMITMMLSMLEGNV---VNGTIGKQMVDTLVESAANVE-- 117
L +S +L++L L + S + + + + + L++S
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 118 LIL---------KYFDMFLKLKDL--TSSASFME-IDINNEGWVYPKDFKEKMEQQKSYT 165
L+L F+ L K L T + + + + + +
Sbjct: 248 LVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 166 PLREYLVERKRRREVMKKRKGEEEVERETKAIPPF 200
L +YL R +++ RE P
Sbjct: 306 LLLKYLDCR------------PQDLPREVLTTNPR 328
Score = 26.7 bits (58), Expect = 7.3
Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 35/133 (26%)
Query: 41 LAHSRLWDAVGGF--LFL-FSHMQDKLSKHSS-----QVDLLKILLNLQ--KDMITMMLS 90
L + + + F +FL F ++ K+ +H S +L L L+ K I
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYIC---- 535
Query: 91 MLEGNVVNGTIGKQMVDTLVESAANVELILKYFDMFLKLKDLTSSASFMEIDINNEGWVY 150
N +++V+ +++ +E L + K DL A M + ++
Sbjct: 536 ------DNDPKYERLVNAILDFLPKIEENL----ICSKYTDLLRIA-LM----AEDEAIF 580
Query: 151 PKDFKEKMEQ-QK 162
+E +Q Q+
Sbjct: 581 ----EEAHKQVQR 589
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.63
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 152 KDFKEKMEQQKSYTPLREYLVER-KRRREVMKK-----RKGEEEV--ERETKAI 197
D K+ +Q+ ++ L E +R+ E ++K R ++ + + I
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>3t92_A Histone acetyltransferase P300 TAZ2-ccaat/enhance protein epsilon;
TAZ2 domain, zinc finger, transcription, 300/CBP, C/EBP
PROT transferase; HET: TCE TAM; 1.50A {Homo sapiens}
PDB: 2k8f_A 2ka6_A 2kje_A 1f81_A
Length = 121
Score = 27.7 bits (61), Expect = 1.2
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 152 KDFKEKMEQQKSYTPLREYLVERKRRREVMKK 183
+ K+K+ QQ+ + +++
Sbjct: 85 LNIKQKLRQQQLEASIDLSAYIESGEEQLLSD 116
>2k2o_A Myoferlin; muscular dystrophy, DYSF, dysferlin, LIMB-girdle,
alternative splicing, membrane, nucleus, phosphoprotein,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 123
Score = 27.7 bits (61), Expect = 1.3
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 139 MEIDIN----NEGWVYPKDFKEKMEQQKSYTPLREYLVERKRRREVMKKRK 185
DIN +GW Y + KS+ E + RRR +++KRK
Sbjct: 63 WSYDINRAVDEKGWEYGITIPPD-HKPKSWVA-AEKMYHTHRRRRLVRKRK 111
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids,
oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1
b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A
1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A*
1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Length = 839
Score = 27.9 bits (61), Expect = 2.7
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 124 DMFLKLKDLTSSASFMEIDINNEGWVYPKDFKEKM---EQQKSYTPLREYLVERKRRREV 180
+ FLK L + ++ I WVY + + +Y P R E
Sbjct: 106 EFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEE 165
Query: 181 MKKRKGEEEVERE 193
+K +G ER+
Sbjct: 166 LKSLRGNGTGERK 178
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A
{Streptococcus pyogenes}
Length = 152
Score = 26.3 bits (57), Expect = 5.6
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 94 GNVVNGTIGKQMVDTLVESAANVELILK---YFDMFLKLKDLTSSASFMEIDINNEGWVY 150
G + IG+ MV+ V S A +E+ + L D + + F +
Sbjct: 27 GGEHSFDIGQGMVEGTVYSDAMLEVSDAGKIVLTFRMSLADYSGNYQFWIQPGGTGSF-Q 85
Query: 151 PKDFKEKMEQQKSYTPLREYLVE 173
D+ + + + +
Sbjct: 86 AVDYNITQKGTDTNGTTLDIAIS 108
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 26.1 bits (57), Expect = 9.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 1 MELIDPAGKANFFKAIGVASQVFNTLS 27
ME I AGK NFF+ Q +S
Sbjct: 377 MENISLAGKTNFFEKRVSDYQKAGVMS 403
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; HET: CXS; 2.00A {Thermotoga
maritima MSB8}
Length = 304
Score = 26.0 bits (58), Expect = 9.9
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 105 MVDTLVESAANVELILKYFDM 125
+ + ++ + ++ ++KYFD+
Sbjct: 99 LTEEIISAMLELDKVVKYFDV 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.378
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,013,283
Number of extensions: 168502
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 29
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)