BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13305
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
           Complex With Nad And Phosphate
 pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
           Complex With Nad And Phosphate
 pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad, A Binary Form
 pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad, A Binary Form
 pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad And Phosphate
 pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad And Phosphate
          Length = 346

 Score = 30.4 bits (67), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 41  IAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISANRPSDDPRRS 100
           I+ Y  K P  I  R       +E  G+Y++ Q   D I +   R+VISA  P D P   
Sbjct: 77  ISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-DAPMFV 135

Query: 101 ITIDEEN 107
           + ++E +
Sbjct: 136 MGVNEND 142


>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat
          Didomain As A Framework For Inhibitor Design.
 pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat
          Didomain As A Framework For Inhibitor Design.
 pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat
          Didomain As A Framework For Inhibitor Design.
 pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat
          Didomain As A Framework For Inhibitor Design
          Length = 965

 Score = 27.3 bits (59), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 74 PEDDDIKSHWDRLVISANRPSDDPRR 99
          PE ++++  WD L+   +  +DD RR
Sbjct: 16 PESENLQEFWDNLIGGVDMVTDDDRR 41


>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
 pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
          Length = 271

 Score = 26.6 bits (57), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 25  MRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDD------ 78
           +  M  LH  V++  LIA  +   P    + +K+I + ++   + I E PE DD      
Sbjct: 130 IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 189

Query: 79  IKSHWDRL---VISAN 91
           +K   DRL   V+ +N
Sbjct: 190 VKKIKDRLPLAVVGSN 205


>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
 pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
          Length = 274

 Score = 26.6 bits (57), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 25  MRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDD------ 78
           +  M  LH  V++  LIA  +   P    + +K+I + ++   + I E PE DD      
Sbjct: 135 IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 194

Query: 79  IKSHWDRL---VISAN 91
           +K   DRL   V+ +N
Sbjct: 195 VKKIKDRLPLAVVGSN 210


>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
          Length = 418

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 25  MRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDD------ 78
           +  M  LH  V++  LIA  +   P    + +K+I + ++   + I E PE DD      
Sbjct: 158 IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKL 217

Query: 79  IKSHWDRL---VISAN 91
           +K   DRL   V+ +N
Sbjct: 218 VKKIKDRLPLAVVGSN 233


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,081,626
Number of Sequences: 62578
Number of extensions: 196284
Number of successful extensions: 417
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 7
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)