BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13305
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 154 bits (390), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/86 (83%), Positives = 81/86 (94%)
Query: 5 EEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLE 64
E++ ELVHVD+DFFYMEHV+R+ A LHSLVSLAMLIAYY+LKVPLAIFKREKEIARRLE
Sbjct: 4714 EDEIPELVHVDEDFFYMEHVLRIAACLHSLVSLAMLIAYYHLKVPLAIFKREKEIARRLE 4773
Query: 65 FDGLYIAEQPEDDDIKSHWDRLVISA 90
F+GL+IAEQPEDDD KSHWD+LVISA
Sbjct: 4774 FEGLFIAEQPEDDDFKSHWDKLVISA 4799
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/44 (90%), Positives = 43/44 (97%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISAK 171
VPLAIFKREKEIARRLEF+GL+IAEQPEDDD KSHWD+LVISAK
Sbjct: 4757 VPLAIFKREKEIARRLEFEGLFIAEQPEDDDFKSHWDKLVISAK 4800
>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1
Length = 4872
Score = 105 bits (263), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 5 EEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLE 64
EE+ + + + YM +R +A +H+++SL ++ YY LKVPL +FKREKEIAR+LE
Sbjct: 4459 EEEAMVFFVLQESTGYMAPTLRALAVVHTIISLVCVVGYYCLKVPLVVFKREKEIARKLE 4518
Query: 65 FDGLYIAEQPEDDDIKSHWDRLVISANRPS 94
FDGLYI EQP +DDIK WDRLVI N PS
Sbjct: 4519 FDGLYITEQPSEDDIKGQWDRLVI--NTPS 4546
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
C V Y VPL +FKREKEIAR+LEFDGLYI EQP +DDIK WDRLVI+
Sbjct: 4493 CVVGYYCLKVPLVVFKREKEIARKLEFDGLYITEQPSEDDIKGQWDRLVIN 4543
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 105 bits (262), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 5 EEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLE 64
EE+ + + + YM +R +A +H+++SL ++ YY LKVPL +FKREKEIAR+LE
Sbjct: 4457 EEEAMVFFVLQESTGYMAPTLRALAIIHTIISLVCVVGYYCLKVPLVVFKREKEIARKLE 4516
Query: 65 FDGLYIAEQPEDDDIKSHWDRLVISANRPS 94
FDGLYI EQP +DDIK WDRLVI N PS
Sbjct: 4517 FDGLYITEQPSEDDIKGQWDRLVI--NTPS 4544
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
C V Y VPL +FKREKEIAR+LEFDGLYI EQP +DDIK WDRLVI+
Sbjct: 4491 CVVGYYCLKVPLVVFKREKEIARKLEFDGLYITEQPSEDDIKGQWDRLVIN 4541
>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus GN=Ryr3 PE=1 SV=1
Length = 4863
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 5 EEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLE 64
EE+ + + + YM +R +A +H+++SL ++ YY LKVPL +FKREKEIAR+LE
Sbjct: 4450 EEEAMVFFVLQESTGYMAPTLRALAIVHTIISLVCVVGYYCLKVPLVVFKREKEIARKLE 4509
Query: 65 FDGLYIAEQPEDDDIKSHWDRLVISANRPS 94
FDGLYI EQP +DDIK WDRLVI N PS
Sbjct: 4510 FDGLYITEQPSEDDIKGQWDRLVI--NTPS 4537
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
C V Y VPL +FKREKEIAR+LEFDGLYI EQP +DDIK WDRLVI+
Sbjct: 4484 CVVGYYCLKVPLVVFKREKEIARKLEFDGLYITEQPSEDDIKGQWDRLVIN 4534
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1
Length = 4966
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R++A LH+++S +I YY LKVPL IFKREKE+AR+LEFDGLYI EQP +DDI
Sbjct: 4566 YMEPTLRILAILHTIISFFCIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDI 4625
Query: 80 KSHWDRLVISAN 91
K WDRLVI+
Sbjct: 4626 KGQWDRLVINTQ 4637
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISAK 171
C + Y VPL IFKREKE+AR+LEFDGLYI EQP +DDIK WDRLVI+ +
Sbjct: 4585 CIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDIKGQWDRLVINTQ 4637
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2
Length = 4953
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R++A LH+++S +I YY LKVPL IFKREKE+AR+LEFDGLYI EQP +DDI
Sbjct: 4553 YMEPTLRILAILHTIISFFCIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDI 4612
Query: 80 KSHWDRLVISAN 91
K WDRLVI+
Sbjct: 4613 KGQWDRLVINTQ 4624
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISAK 171
C + Y VPL IFKREKE+AR+LEFDGLYI EQP +DDIK WDRLVI+ +
Sbjct: 4572 CIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDIKGQWDRLVINTQ 4624
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus GN=RYR2 PE=1 SV=3
Length = 4969
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R++A LH+++S +I YY LKVPL IFKREKE+AR+LEFDGLYI EQP +DDI
Sbjct: 4569 YMEPTLRILAILHTVISFFCIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDI 4628
Query: 80 KSHWDRLVISAN 91
K WDRLVI+
Sbjct: 4629 KGQWDRLVINTQ 4640
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISAK 171
C + Y VPL IFKREKE+AR+LEFDGLYI EQP +DDIK WDRLVI+ +
Sbjct: 4588 CIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDIKGQWDRLVINTQ 4640
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3
Length = 4967
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R++A LH+++S +I YY LKVPL IFKREKE+AR+LEFDGLYI EQP +DDI
Sbjct: 4567 YMEPTLRILAILHTVISFFCIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDI 4626
Query: 80 KSHWDRLVISAN 91
K WDRLVI+
Sbjct: 4627 KGQWDRLVINTQ 4638
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 123 CPVDY----VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISAK 171
C + Y VPL IFKREKE+AR+LEFDGLYI EQP +DDIK WDRLVI+ +
Sbjct: 4586 CIIGYYCLKVPLVIFKREKEVARKLEFDGLYITEQPSEDDIKGQWDRLVINTQ 4638
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1
Length = 5035
Score = 103 bits (258), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R ++ LH+LV+ +I Y LKVPL IFKREKE+AR+LEFDGLYI EQPEDDD+
Sbjct: 4636 YMEPALRCLSLLHTLVAFLCIIGYNCLKVPLVIFKREKELARKLEFDGLYITEQPEDDDV 4695
Query: 80 KSHWDRLVISANRPS 94
K WDRLV+ N PS
Sbjct: 4696 KGQWDRLVL--NTPS 4708
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
VPL IFKREKE+AR+LEFDGLYI EQPEDDD+K WDRLV++
Sbjct: 4664 VPLVIFKREKELARKLEFDGLYITEQPEDDDVKGQWDRLVLN 4705
>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2
Length = 5035
Score = 103 bits (258), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R ++ LH+LV+ +I Y LKVPL IFKREKE+AR+LEFDGLYI EQPEDDD+
Sbjct: 4636 YMEPALRCLSLLHTLVAFLCIIGYNCLKVPLVIFKREKELARKLEFDGLYITEQPEDDDV 4695
Query: 80 KSHWDRLVISANRPS 94
K WDRLV+ N PS
Sbjct: 4696 KGQWDRLVL--NTPS 4708
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
VPL IFKREKE+AR+LEFDGLYI EQPEDDD+K WDRLV++
Sbjct: 4664 VPLVIFKREKELARKLEFDGLYITEQPEDDDVKGQWDRLVLN 4705
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1
Length = 5035
Score = 103 bits (257), Expect = 5e-22, Method: Composition-based stats.
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 3/92 (3%)
Query: 4 GEEDPIELVH-VDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARR 62
G+ED + + +++ YME +R ++ LH+LV+ +I Y LKVPL IFKREKE+AR+
Sbjct: 4619 GDEDENMVYYFLEESTGYMEPALRCLSLLHTLVAFLCIIGYNCLKVPLVIFKREKELARK 4678
Query: 63 LEFDGLYIAEQPEDDDIKSHWDRLVISANRPS 94
LEFDGLYI EQPEDDD+K WDRLV+ N PS
Sbjct: 4679 LEFDGLYITEQPEDDDVKGQWDRLVL--NTPS 4708
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
VPL IFKREKE+AR+LEFDGLYI EQPEDDD+K WDRLV++
Sbjct: 4664 VPLVIFKREKELARKLEFDGLYITEQPEDDDVKGQWDRLVLN 4705
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3
Length = 5038
Score = 103 bits (257), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME +R ++ LH+LV+ +I Y LKVPL IFKREKE+AR+LEFDGLYI EQPEDDD+
Sbjct: 4639 YMEPALRCLSLLHTLVAFLCIIGYNCLKVPLVIFKREKELARKLEFDGLYITEQPEDDDV 4698
Query: 80 KSHWDRLVISANRPS 94
K WDRLV+ N PS
Sbjct: 4699 KGQWDRLVL--NTPS 4711
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
VPL IFKREKE+AR+LEFDGLYI EQPEDDD+K WDRLV++
Sbjct: 4667 VPLVIFKREKELARKLEFDGLYITEQPEDDDVKGQWDRLVLN 4708
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 97.4 bits (241), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 20 YMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQPEDDDI 79
YME + ++ LH+LV+ +I Y LKVPL IFKREKE+AR+LEFDGLYI EQP DDD+
Sbjct: 4638 YMEPALWCLSLLHTLVAFLCIIGYNCLKVPLVIFKREKELARKLEFDGLYITEQPGDDDV 4697
Query: 80 KSHWDRLVISANRPS 94
K WDRLV+ N PS
Sbjct: 4698 KGQWDRLVL--NTPS 4710
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 128 VPLAIFKREKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVIS 169
VPL IFKREKE+AR+LEFDGLYI EQP DDD+K WDRLV++
Sbjct: 4666 VPLVIFKREKELARKLEFDGLYITEQPGDDDVKGQWDRLVLN 4707
>sp|Q3SSP2|3MGH_NITWN Putative 3-methyladenine DNA glycosylase OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_1438
PE=3 SV=1
Length = 208
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 98 RRSITIDEENLCCRG------SVDVSVDINRCPVDYVPLAIFKREKE 138
RR + EE L C G ++ +S+ N P+D P+A+F+R ++
Sbjct: 124 RRRRGLHEERLLCSGPGRLCQALGISIAHNALPLDAPPIAVFRRTEK 170
>sp|Q81QG0|ANMK_BACAN Anhydro-N-acetylmuramic acid kinase OS=Bacillus anthracis GN=anmK
PE=3 SV=1
Length = 382
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 2 GSGEEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIAR 61
GSG E +EL+H F + + AL S LI N K+ L KE+ +
Sbjct: 24 GSGVESKVELIHFTTVPFCNDIKSEIQQALSIENSNVQLICSLNFKLGLCFANAVKEVCK 83
Query: 62 RLEFD----------GLYIAEQPEDDD 78
F G I QP+ D
Sbjct: 84 EANFSLEQLDLIGSHGQTIYHQPKQDG 110
>sp|C3LIG8|ANMK_BACAC Anhydro-N-acetylmuramic acid kinase OS=Bacillus anthracis (strain
CDC 684 / NRRL 3495) GN=anmK PE=3 SV=1
Length = 382
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 2 GSGEEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIAR 61
GSG E +EL+H F + + AL S LI N K+ L KE+ +
Sbjct: 24 GSGVESKVELIHFTTVPFCNDIKSEIQQALSIENSNVQLICSLNFKLGLCFANAVKEVCK 83
Query: 62 RLEFD----------GLYIAEQPEDDD 78
F G I QP+ D
Sbjct: 84 EANFSLEQLDLIGSHGQTIYHQPKQDG 110
>sp|C3PA65|ANMK_BACAA Anhydro-N-acetylmuramic acid kinase OS=Bacillus anthracis (strain
A0248) GN=anmK PE=3 SV=1
Length = 382
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 2 GSGEEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIAR 61
GSG E +EL+H F + + AL S LI N K+ L KE+ +
Sbjct: 24 GSGVESKVELIHFTTVPFCNDIKSEIQQALSIENSNVQLICSLNFKLGLCFANAVKEVCK 83
Query: 62 RLEFD----------GLYIAEQPEDDD 78
F G I QP+ D
Sbjct: 84 EANFSLEQLDLIGSHGQTIYHQPKQDG 110
>sp|B7JNT4|ANMK_BACC0 Anhydro-N-acetylmuramic acid kinase OS=Bacillus cereus (strain
AH820) GN=anmK PE=3 SV=1
Length = 382
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 2 GSGEEDPIELVHVDQDFFYMEHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIAR 61
GSG E +EL+H F + + AL S LI N K+ L KE+ +
Sbjct: 24 GSGVESKVELIHFTTVPFCNDIKSEIQQALSIENSNVQLICSLNFKLGLCFANAVKEVCK 83
Query: 62 RLEFD----------GLYIAEQPEDDD 78
F G I QP+ D
Sbjct: 84 EANFSLEQLDLIGSHGQTIYHQPKQDG 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,236,813
Number of Sequences: 539616
Number of extensions: 2550425
Number of successful extensions: 5339
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5300
Number of HSP's gapped (non-prelim): 55
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)