Query psy13305
Match_columns 171
No_of_seqs 84 out of 86
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 16:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m6z_A Topoisomerase V; helix- 40.8 9.3 0.00032 33.4 1.3 31 57-90 201-236 (380)
2 3poj_A Mannan-binding lectin s 35.7 8.7 0.0003 26.2 0.3 12 87-98 15-26 (115)
3 2wjn_L Reaction center protein 33.5 42 0.0014 29.0 4.2 30 24-65 85-114 (274)
4 2csb_A Topoisomerase V, TOP61; 33.5 14 0.00047 33.3 1.2 31 57-90 201-236 (519)
5 1rzh_L Reaction center protein 33.1 44 0.0015 29.0 4.3 30 24-65 84-113 (281)
6 2wjn_M Reaction center protein 32.3 44 0.0015 29.5 4.2 30 24-65 112-141 (324)
7 1eys_L Photosynthetic reaction 31.6 43 0.0015 29.0 4.0 30 24-65 92-121 (280)
8 1rzh_M Reaction center protein 30.4 50 0.0017 29.0 4.2 30 24-65 113-142 (307)
9 1eys_M Photosynthetic reaction 29.9 47 0.0016 29.4 4.0 30 24-65 112-141 (324)
10 4gfj_A Topoisomerase V; helix- 29.5 17 0.0006 34.3 1.2 31 57-90 201-236 (685)
11 2hg7_A Phage-like element PBSX 29.4 30 0.001 26.4 2.3 30 66-95 27-62 (110)
12 3arc_D Photosystem II reaction 28.7 57 0.0019 29.1 4.3 30 24-65 99-128 (342)
13 1nzi_A Complement C1S componen 28.1 14 0.00047 26.5 0.3 12 87-98 7-18 (159)
14 3arc_A Photosystem Q(B) protei 25.5 68 0.0023 28.6 4.2 29 25-65 111-139 (344)
15 3cux_A Malate synthase; TIM ba 24.6 34 0.0012 31.5 2.2 21 131-151 344-364 (528)
16 1u5h_A CITE; TIM barrel, struc 24.0 37 0.0013 27.6 2.1 23 129-151 187-209 (273)
17 1szb_A Mannose binding lectin- 23.4 19 0.00065 26.3 0.3 12 87-98 14-25 (170)
18 3arc_O Photosystem II manganes 22.4 18 0.00063 30.8 -0.0 16 64-79 207-222 (243)
19 3cux_A Malate synthase; TIM ba 22.0 41 0.0014 31.0 2.2 22 51-72 344-365 (528)
20 2lk9_A Bone marrow stromal ant 20.8 34 0.0012 21.5 1.0 9 46-54 20-28 (35)
21 2wno_A Tumor necrosis factor-i 20.6 24 0.00081 25.8 0.3 12 87-98 17-28 (149)
22 1fvp_A Flavoprotein 390, FP390 20.3 42 0.0014 25.1 1.6 21 135-155 30-52 (231)
23 2ew0_A Hypothetical protein ac 20.1 53 0.0018 26.0 2.2 36 56-106 136-171 (192)
No 1
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=40.78 E-value=9.3 Score=33.42 Aligned_cols=31 Identities=48% Similarity=0.873 Sum_probs=24.2
Q ss_pred HHHHHHhhcCceeee-----cCCCchhhhhhhhhhhhcC
Q psy13305 57 KEIARRLEFDGLYIA-----EQPEDDDIKSHWDRLVISA 90 (171)
Q Consensus 57 KEIARkLEFDGl~It-----eqp~eddik~~WDrLVIst 90 (171)
.||||+| |+-++ .+|+..-|-+.|-|.|+|-
T Consensus 201 deiarrl---glsvsevegekdpessgiyslwsrvvvni 236 (380)
T 3m6z_A 201 DEIARRL---GLSVSEVEGEKDPESSGIYSLWSRVVVNI 236 (380)
T ss_dssp HHHHHHH---TCCHHHHHCCSSTTSCSHHHHHHHHHHTS
T ss_pred HHHHHHh---CCchhhhcCCCCcccccHHHhhhhheEee
Confidence 4899999 34444 4677788999999999985
No 2
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=35.66 E-value=8.7 Score=26.21 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=10.6
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|++|.||.+|=
T Consensus 15 ~i~SP~yP~~Yp 26 (115)
T 3poj_A 15 TITSPDYPNPYP 26 (115)
T ss_dssp EEECTTTTSCCC
T ss_pred EEcCCCCCcCCc
Confidence 688999999986
No 3
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=33.48 E-value=42 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 85 G~w~~~~~~~~~~~~~w~~------------R~~e~ar~LGm 114 (274)
T 2wjn_L 85 GFWQAITVCALGAFISWML------------REVEISRKLGI 114 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 4577889999999887665 99999999953
No 4
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=33.47 E-value=14 Score=33.35 Aligned_cols=31 Identities=48% Similarity=0.873 Sum_probs=24.2
Q ss_pred HHHHHHhhcCceeee-----cCCCchhhhhhhhhhhhcC
Q psy13305 57 KEIARRLEFDGLYIA-----EQPEDDDIKSHWDRLVISA 90 (171)
Q Consensus 57 KEIARkLEFDGl~It-----eqp~eddik~~WDrLVIst 90 (171)
.||||+| |+-++ .+|+..-|-+.|.|.|+|-
T Consensus 201 deiarrl---glsvsevegekdpessgiyslwsrvvvni 236 (519)
T 2csb_A 201 DEIARRL---GLSVSEVEGEKDPESSGIYSLWSRVVVNI 236 (519)
T ss_dssp HHHHHHH---TCCHHHHHCCSSSSSCSHHHHHHHHHTTS
T ss_pred HHHHHHh---CCchhhhcCCCCcccccHHHHhhhheEee
Confidence 4899999 34444 4677788999999999985
No 5
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=33.13 E-value=44 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 84 G~w~~~~~~~~~~~~~w~~------------R~~e~ar~LGm 113 (281)
T 1rzh_L 84 GLWQIITICATGAFVSWAL------------REVEICRKLGI 113 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 4577889999999887665 99999999953
No 6
>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Probab=32.26 E-value=44 Score=29.55 Aligned_cols=30 Identities=33% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 112 G~w~~~~f~~~~s~~~w~~------------R~~e~ar~LGm 141 (324)
T 2wjn_M 112 GWWLMAGLFMTLSLGSWWI------------RVYSRARALGL 141 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 4577889999999877655 99999999953
No 7
>1eys_L Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=31.65 E-value=43 Score=29.04 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 92 G~w~~~~~~~~~~~~~w~~------------R~~e~ar~LGm 121 (280)
T 1eys_L 92 GLWQIITICAAGAFISWAL------------REVEICRKLGI 121 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 4577889999999887665 99999999953
No 8
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=30.40 E-value=50 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 113 G~w~~~~~~~~~s~~~w~~------------R~~e~ar~LGm 142 (307)
T 1rzh_M 113 GLWLIASFFMFVAVWSWWG------------RTYLRAQALGM 142 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 3577889999999877655 99999999953
No 9
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=29.86 E-value=47 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 112 G~w~~~~~~~~~s~~~w~~------------R~~e~ar~LGm 141 (324)
T 1eys_M 112 GWWLIAGLFLTLSILLWWV------------RTYKRAEALGM 141 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 3577899999999877665 99999999953
No 10
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=29.47 E-value=17 Score=34.33 Aligned_cols=31 Identities=48% Similarity=0.873 Sum_probs=24.6
Q ss_pred HHHHHHhhcCceeee-----cCCCchhhhhhhhhhhhcC
Q psy13305 57 KEIARRLEFDGLYIA-----EQPEDDDIKSHWDRLVISA 90 (171)
Q Consensus 57 KEIARkLEFDGl~It-----eqp~eddik~~WDrLVIst 90 (171)
-||||+| |+-++ .+|+..-|-+.|-|.|+|-
T Consensus 201 deiarrl---glsvsevegekdpessgiyslwsrvvvni 236 (685)
T 4gfj_A 201 DEIARRL---GLSVSEVEGEKDPESSGIYSLWSRVVVNI 236 (685)
T ss_dssp HHHHHHH---TCCHHHHHCCSSSSSCSHHHHHHHHHHTS
T ss_pred HHHHHHh---CCchhhhcCCCCcccccHHHhhhhheEee
Confidence 4899999 44454 3677788999999999985
No 11
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=29.42 E-value=30 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=25.2
Q ss_pred Cceeeec------CCCchhhhhhhhhhhhcCCCCCC
Q psy13305 66 DGLYIAE------QPEDDDIKSHWDRLVISANRPSD 95 (171)
Q Consensus 66 DGl~Ite------qp~eddik~~WDrLVIst~SFP~ 95 (171)
||-||.| +|+..+++..|+.+-.|.|-=|-
T Consensus 27 dGsYI~eW~l~AP~PT~~eL~~wwee~q~np~yepP 62 (110)
T 2hg7_A 27 NGSYIEKWNLRAPLPTQAELETWWEELQKNPPYEPP 62 (110)
T ss_dssp SCEEEEEECSSSCCCCHHHHHHHHHHHHHSCCCC--
T ss_pred CcchHHhhccCCCCCCHHHHHHHHHHHHhCCCCCCc
Confidence 7899976 89999999999999999886654
No 12
>3arc_D Photosystem II reaction center D2 protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_D* 1izl_D* 1s5l_D* 1w5c_D* 2axt_D* 3bz2_D* 3kzi_D* 3prq_D* 3prr_D* 3a0b_D* 3a0h_D*
Probab=28.71 E-value=57 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+++-.+ ||-|+||||.-
T Consensus 99 G~w~~i~~~~~~sv~~w~~------------R~~e~ar~LGM 128 (342)
T 3arc_D 99 GLWTFIALHGAFGLIGFML------------RQFEIARLVGV 128 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 3567889999999887665 99999999953
No 13
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=28.14 E-value=14 Score=26.45 Aligned_cols=12 Identities=8% Similarity=-0.153 Sum_probs=10.4
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|++|.||.+|=
T Consensus 7 ~i~SP~yP~~Yp 18 (159)
T 1nzi_A 7 EILSPNYPQAYP 18 (159)
T ss_dssp EEECTTTTSCCC
T ss_pred EEECCCCccCCC
Confidence 588999999984
No 14
>3arc_A Photosystem Q(B) protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1w5c_A* 3bz1_A* 1s5l_A* 2axt_A* 3bz2_A* 3kzi_A* 3prq_A* 3prr_A* 1izl_A* 3a0b_A* 3a0h_A*
Probab=25.46 E-value=68 Score=28.59 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 25 MRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 25 L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
++.++.+|.++|+++-.+ ||-|+||+|.-
T Consensus 111 ~w~~i~~~~~~~v~~w~~------------R~~e~ar~LGm 139 (344)
T 3arc_A 111 PYQLIIFHFLLGASCYMG------------RQWELSYRLGM 139 (344)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 567888999888877655 99999999953
No 15
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=24.61 E-value=34 Score=31.50 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred hhhhhhHHHHHHhccCcEEee
Q psy13305 131 AIFKREKEIARRLEFDGLYIA 151 (171)
Q Consensus 131 ~~fkREkeiar~lefdg~~i~ 151 (171)
.-+++||+-+++++|||.|+.
T Consensus 344 ~~~~~dk~~~~~~GfdGkwvi 364 (528)
T 3cux_A 344 EKVRADKEREALDGHDGTWVA 364 (528)
T ss_dssp CHHHHHHHHHHHHTCSBEEES
T ss_pred HHHHHHHHHHHhCCCCccccc
Confidence 378999999999999999984
No 16
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A
Probab=23.98 E-value=37 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.6
Q ss_pred chhhhhhhHHHHHHhccCcEEee
Q psy13305 129 PLAIFKREKEIARRLEFDGLYIA 151 (171)
Q Consensus 129 pl~~fkREkeiar~lefdg~~i~ 151 (171)
-..-|.+|.+-+|.++|+|.|+-
T Consensus 187 d~~gl~~~~~~~~~~Gf~Gk~~I 209 (273)
T 1u5h_A 187 DVEGLQEEARDAAAVGFDVTVCI 209 (273)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEES
T ss_pred CHHHHHHHHHHHHhCCCCceeec
Confidence 34568899999999999999974
No 17
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=23.36 E-value=19 Score=26.32 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=10.6
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|++|.||.+|=
T Consensus 14 ~i~SP~yP~~Yp 25 (170)
T 1szb_A 14 RLASPGFPGEYA 25 (170)
T ss_dssp EEECTTTTSCCC
T ss_pred EEECCCCCcCCc
Confidence 688999999985
No 18
>3arc_O Photosystem II manganese-stabilizing polypeptide; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_O* 2axt_O* 3bz2_O* 3prq_O* 3prr_O* 1s5l_O* 3kzi_O* 3a0b_O* 3a0h_O*
Probab=22.36 E-value=18 Score=30.79 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=14.9
Q ss_pred hcCceeeecCCCchhh
Q psy13305 64 EFDGLYIAEQPEDDDI 79 (171)
Q Consensus 64 EFDGl~Iteqp~eddi 79 (171)
||-|.+.++||+|.|+
T Consensus 207 EiaGvF~s~QpSDTDl 222 (243)
T 3arc_O 207 EIAGTFESEQLSDDDM 222 (243)
T ss_dssp EEEEEEEEEEECCCTT
T ss_pred eEEEEEEeeCCCCccc
Confidence 7899999999999887
No 19
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=22.02 E-value=41 Score=30.98 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred hhhhhhHHHHHHhhcCceeeec
Q psy13305 51 AIFKREKEIARRLEFDGLYIAE 72 (171)
Q Consensus 51 viFKREKEIARkLEFDGl~Ite 72 (171)
.=|++||+-++++.|||-|+..
T Consensus 344 ~~~~~dk~~~~~~GfdGkwviH 365 (528)
T 3cux_A 344 EKVRADKEREALDGHDGTWVAH 365 (528)
T ss_dssp CHHHHHHHHHHHHTCSBEEESS
T ss_pred HHHHHHHHHHHhCCCCcccccC
Confidence 4789999999999999999954
No 20
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=20.84 E-value=34 Score=21.49 Aligned_cols=9 Identities=67% Similarity=1.043 Sum_probs=7.8
Q ss_pred cccchhhhh
Q psy13305 46 LKVPLAIFK 54 (171)
Q Consensus 46 LKVPLviFK 54 (171)
|-||||+|-
T Consensus 20 LgV~LI~f~ 28 (35)
T 2lk9_A 20 LGVPLIIFT 28 (35)
T ss_dssp HHHHHHHHC
T ss_pred hcchheEEe
Confidence 889999984
No 21
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=20.55 E-value=24 Score=25.80 Aligned_cols=12 Identities=0% Similarity=0.063 Sum_probs=10.6
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|++|.||.+|=
T Consensus 17 ~i~SP~yP~~Yp 28 (149)
T 2wno_A 17 IFKSPGFPNEYE 28 (149)
T ss_dssp EEECTTTTSCCC
T ss_pred EEECCCCCcCCC
Confidence 689999999885
No 22
>1fvp_A Flavoprotein 390, FP390; flavin-binding protein; HET: FMA; 2.70A {Photobacterium phosphoreum} SCOP: c.1.16.2
Probab=20.34 E-value=42 Score=25.11 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=17.3
Q ss_pred hhHHHHHH--hccCcEEeecCCC
Q psy13305 135 REKEIARR--LEFDGLYIAEQPE 155 (171)
Q Consensus 135 REkeiar~--lefdg~~i~e~p~ 155 (171)
+..+.|.+ |+||..|++|-=.
T Consensus 30 ~la~~Ae~~~lGf~~~w~~EHH~ 52 (231)
T 1fvp_A 30 ETLRIIDEDTSIYDVINIDDHYL 52 (231)
T ss_dssp HHHHHHHHHCSSEEEEEEECTTS
T ss_pred HHHHHHhhhcCCCCeEeecccCC
Confidence 36678889 9999999999643
No 23
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=20.08 E-value=53 Score=26.04 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=24.7
Q ss_pred hHHHHHHhhcCceeeecCCCchhhhhhhhhhhhcCCCCCChhhhhhhhhcc
Q psy13305 56 EKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISANRPSDDPRRSITIDEE 106 (171)
Q Consensus 56 EKEIARkLEFDGl~Iteqp~eddik~~WDrLVIst~SFP~~Yw~kv~~~~~ 106 (171)
|+||+ +|-|++-.-+.+ ++.++| |.+-|+.++++-|
T Consensus 136 e~Ei~-----~n~Wl~~~a~~~--------~lf~~~--~~~~W~~al~~lG 171 (192)
T 2ew0_A 136 EDEIA-----RGDWLICDADMD--------LIFNLP--YDDRWDAAYKKIG 171 (192)
T ss_dssp HHHHH-----TTCCEEEECCHH--------HHTTSC--GGGHHHHHHHHGG
T ss_pred HHHHH-----cCCEEEecCCHH--------HhhCCC--HHHHHHHHHHHhC
Confidence 67776 577877764333 355566 8999999888754
Done!