Query psy13305
Match_columns 171
No_of_seqs 84 out of 86
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 16:05:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hg7a1 d.186.2.1 (A:1-60) Pha 57.9 2.5 0.00018 27.8 2.0 26 66-91 27-58 (60)
2 d2csba5 a.267.1.1 (A:3-293) To 45.4 3.3 0.00024 33.2 1.2 32 57-91 199-235 (291)
3 d2qqma3 b.23.1.1 (A:156-263) M 44.9 2.4 0.00018 26.5 0.3 12 87-98 2-13 (108)
4 d1nt0a2 b.23.1.1 (A:165-278) M 39.5 3.3 0.00024 26.8 0.3 12 87-98 12-23 (114)
5 d1nzia1 b.23.1.1 (A:1-117) Com 38.0 3.6 0.00026 26.3 0.3 12 87-98 7-18 (117)
6 d2axtd1 f.26.1.1 (D:13-352) Ph 36.4 17 0.0012 30.3 4.3 30 24-65 97-126 (340)
7 d1szba1 b.23.1.1 (A:3-123) Man 34.7 4.3 0.00031 26.1 0.3 12 87-98 12-23 (121)
8 d2gs5a1 d.310.1.1 (A:1-193) Hy 28.8 15 0.0011 26.6 2.5 37 55-106 146-182 (193)
9 d1sgja_ c.1.12.5 (A:) Citrate 28.1 13 0.00096 27.4 2.1 22 129-150 196-217 (231)
10 d2gzoa1 d.310.1.1 (A:1-187) Hy 27.7 15 0.0011 26.4 2.2 36 56-106 139-174 (187)
11 d2axta1 f.26.1.1 (A:10-344) Ph 25.8 31 0.0023 28.5 4.2 29 25-65 102-130 (335)
12 d2axtz1 f.17.5.1 (Z:1-62) Phot 25.6 26 0.0019 22.7 2.9 26 21-51 1-26 (62)
13 d1kqfc_ f.21.1.1 (C:) Formate 22.2 25 0.0018 24.8 2.6 47 22-73 144-190 (216)
14 d1eysm_ f.26.1.1 (M:) M (mediu 20.4 43 0.0031 27.5 4.0 30 24-65 112-141 (318)
15 d2hafa1 d.310.1.1 (A:15-192) H 20.3 25 0.0019 24.9 2.3 36 56-106 140-175 (178)
No 1
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=57.92 E-value=2.5 Score=27.77 Aligned_cols=26 Identities=23% Similarity=0.662 Sum_probs=22.6
Q ss_pred Cceeeec------CCCchhhhhhhhhhhhcCC
Q psy13305 66 DGLYIAE------QPEDDDIKSHWDRLVISAN 91 (171)
Q Consensus 66 DGl~Ite------qp~eddik~~WDrLVIst~ 91 (171)
||.||.| ||++.+++..|+.+-.|.+
T Consensus 27 dG~yI~eW~l~aP~PTe~EL~~~w~e~q~np~ 58 (60)
T d2hg7a1 27 NGSYIEKWNLRAPLPTQAELETWWEELQKNPP 58 (60)
T ss_dssp SCEEEEEECSSSCCCCHHHHHHHHHHHHHSCC
T ss_pred CchhhheeecCCCCCcHHHHHHHHHHHhhCCC
Confidence 7899976 8999999999999887754
No 2
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=45.43 E-value=3.3 Score=33.20 Aligned_cols=32 Identities=47% Similarity=0.855 Sum_probs=24.8
Q ss_pred HHHHHHhhcCceeee-----cCCCchhhhhhhhhhhhcCC
Q psy13305 57 KEIARRLEFDGLYIA-----EQPEDDDIKSHWDRLVISAN 91 (171)
Q Consensus 57 KEIARkLEFDGl~It-----eqp~eddik~~WDrLVIst~ 91 (171)
.||||+| |+-++ .+|+..-|-+.|.|.|+|-.
T Consensus 199 deiarrl---glsvsevegekdpessgiyslwsrvvvnie 235 (291)
T d2csba5 199 DEIARRL---GLSVSEVEGEKDPESSGIYSLWSRVVVNIE 235 (291)
T ss_dssp HHHHHHH---TCCHHHHHCCSSSSSCSHHHHHHHHHTTSC
T ss_pred HHHHHHh---CCchhhhcCCCCcccccHHHhhhhheEeee
Confidence 4899999 34444 46777889999999999853
No 3
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.85 E-value=2.4 Score=26.53 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=10.3
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|+||.||.+|=
T Consensus 2 ~i~SP~yP~~Y~ 13 (108)
T d2qqma3 2 VIKSPGFPEKYP 13 (108)
T ss_dssp EEECTTTTSCCC
T ss_pred EEeCCCCCCCCC
Confidence 578999999885
No 4
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.47 E-value=3.3 Score=26.76 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=10.3
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|++|.||.+|=
T Consensus 12 ~i~SP~yP~~Y~ 23 (114)
T d1nt0a2 12 FLSSPEYPQPYP 23 (114)
T ss_dssp EEECTTTTSCCC
T ss_pred EEECCCCCCCCC
Confidence 688999999883
No 5
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.98 E-value=3.6 Score=26.32 Aligned_cols=12 Identities=8% Similarity=-0.153 Sum_probs=10.3
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
+|+||.||.+|=
T Consensus 7 ~i~SP~yP~~Yp 18 (117)
T d1nzia1 7 EILSPNYPQAYP 18 (117)
T ss_dssp EEECTTTTSCCC
T ss_pred EEeCCCCCCCCC
Confidence 588999999984
No 6
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=36.41 E-value=17 Score=30.28 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++++|.++|+.+-.. ||-|+||||..
T Consensus 97 G~w~ii~~~~~~~v~~w~~------------R~~e~a~~LGm 126 (340)
T d2axtd1 97 GLWTFIALHGAFGLIGFML------------RQFEIARLVGV 126 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 3578889999998887665 99999999964
No 7
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.74 E-value=4.3 Score=26.15 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=10.4
Q ss_pred hhcCCCCCChhh
Q psy13305 87 VISANRPSDDPR 98 (171)
Q Consensus 87 VIst~SFP~~Yw 98 (171)
.|+||.||.+|=
T Consensus 12 ~i~SP~yP~~Yp 23 (121)
T d1szba1 12 RLASPGFPGEYA 23 (121)
T ss_dssp EEECTTTTSCCC
T ss_pred EEeCCCCCCCCC
Confidence 588999999984
No 8
>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=28.75 E-value=15 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=25.8
Q ss_pred hhHHHHHHhhcCceeeecCCCchhhhhhhhhhhhcCCCCCChhhhhhhhhcc
Q psy13305 55 REKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISANRPSDDPRRSITIDEE 106 (171)
Q Consensus 55 REKEIARkLEFDGl~Iteqp~eddik~~WDrLVIst~SFP~~Yw~kv~~~~~ 106 (171)
=|.||.| |.|++-+.+.+ +|.+++ |.+-|++++++-|
T Consensus 146 Le~EI~~-----g~Wlv~~~~~~--------~iF~~~--~~~~W~~~l~~lG 182 (193)
T d2gs5a1 146 LAQEIEN-----GDWFVAPALPS--------DVTAPG--SVDVWGDVMRRQP 182 (193)
T ss_dssp HHHHHHT-----TSEEEEECCHH--------HHHCCT--TCCHHHHHHHTSS
T ss_pred HHHHHHc-----CcEEEccCCHH--------HhcCCC--HHHHHHHHHHHcC
Confidence 3777764 89998765544 444554 7899999887644
No 9
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.07 E-value=13 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.5
Q ss_pred chhhhhhhHHHHHHhccCcEEe
Q psy13305 129 PLAIFKREKEIARRLEFDGLYI 150 (171)
Q Consensus 129 pl~~fkREkeiar~lefdg~~i 150 (171)
=+.-|++|-+.+|.|+|+|.|.
T Consensus 196 D~~~l~~~~~~~r~lGf~Gk~~ 217 (231)
T d1sgja_ 196 DPETFRADAEQGRALGYSGKLC 217 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCeee
Confidence 3468999999999999999986
No 10
>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]}
Probab=27.70 E-value=15 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=24.8
Q ss_pred hHHHHHHhhcCceeeecCCCchhhhhhhhhhhhcCCCCCChhhhhhhhhcc
Q psy13305 56 EKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISANRPSDDPRRSITIDEE 106 (171)
Q Consensus 56 EKEIARkLEFDGl~Iteqp~eddik~~WDrLVIst~SFP~~Yw~kv~~~~~ 106 (171)
|.||.+ |.|++-..+.+. |.+++ |.+-|++++++.|
T Consensus 139 e~Ei~~-----~~W~~~~~~~~~--------iF~~~--~~~~W~~~l~~lG 174 (187)
T d2gzoa1 139 EQELAD-----NSWLTIPADHAL--------LFDIN--HEDRWQQASRSLG 174 (187)
T ss_dssp HHHHHH-----HTCEEEECCHHH--------HTTSC--SSHHHHHHHHCCC
T ss_pred Hhhhcc-----CCEEEecCCHHH--------hhCCC--HHHHHHHHHHHcC
Confidence 667764 677776544443 44545 7899999999877
No 11
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.79 E-value=31 Score=28.54 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 25 MRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 25 L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
++.++.+|.++|+.+-.+ ||-|+||||.-
T Consensus 102 ~w~ii~~~~l~~v~~w~~------------R~~e~a~~LGM 130 (335)
T d2axta1 102 PYQLIIFHFLLGASCYMG------------RQWELSYRLGM 130 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 677888888888876554 99999999963
No 12
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.65 E-value=26 Score=22.72 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchh
Q psy13305 21 MEHVMRLMAALHSLVSLAMLIAYYNLKVPLA 51 (171)
Q Consensus 21 m~~~L~~lavlH~l~Sf~~LI~yy~LKVPLv 51 (171)
|.-+.+..-.+-...||+|+|| ||.+
T Consensus 1 Mti~fQl~v~ALi~~SF~lVVg-----VPV~ 26 (62)
T d2axtz1 1 MTILFQLALAALVILSFVMVIG-----VPVA 26 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred CeeHHHHHHHHHHHHHHHHhee-----ceEE
Confidence 3445667777778899999999 7865
No 13
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=22.18 E-value=25 Score=24.81 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhcCceeeecC
Q psy13305 22 EHVMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEFDGLYIAEQ 73 (171)
Q Consensus 22 ~~~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEFDGl~Iteq 73 (171)
.....++..+|.+.++++ +++-.+-|-++++++ ..+ +-+++| |++++
T Consensus 144 ~~~~~~~~~iH~~~~~l~-~~~vi~Hvy~a~~~~-~~l--~~M~tG-~v~~~ 190 (216)
T d1kqfc_ 144 MQVVRYSLLIHAAAGIIL-IHAILIHMYMAFWVK-GSI--KGMIEG-KVSRR 190 (216)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHBT-THH--HHHHTC-EEEHH
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccc-ccc--chhhee-eccHH
Confidence 356777888998876665 566667888887654 332 347888 77764
No 14
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=20.38 E-value=43 Score=27.48 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHhhc
Q psy13305 24 VMRLMAALHSLVSLAMLIAYYNLKVPLAIFKREKEIARRLEF 65 (171)
Q Consensus 24 ~L~~lavlH~l~Sf~~LI~yy~LKVPLviFKREKEIARkLEF 65 (171)
=++.++.+|.++|+.+--. ||-|+||||.-
T Consensus 112 G~W~i~~~~~~~s~~~W~~------------R~~e~ar~LGm 141 (318)
T d1eysm_ 112 GWWLIAGLFLTLSILLWWV------------RTYKRAEALGM 141 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHH------------HHHHHHHHhCC
Confidence 3677888888888776443 99999999954
No 15
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]}
Probab=20.29 E-value=25 Score=24.87 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=24.0
Q ss_pred hHHHHHHhhcCceeeecCCCchhhhhhhhhhhhcCCCCCChhhhhhhhhcc
Q psy13305 56 EKEIARRLEFDGLYIAEQPEDDDIKSHWDRLVISANRPSDDPRRSITIDEE 106 (171)
Q Consensus 56 EKEIARkLEFDGl~Iteqp~eddik~~WDrLVIst~SFP~~Yw~kv~~~~~ 106 (171)
|.||. .|.|++-..+.|.+ .+++ |.+.|++++++-|
T Consensus 140 e~Ei~-----~~sW~v~~~~~~~i--------f~~~--~~~~W~~~l~~lG 175 (178)
T d2hafa1 140 EVELT-----ENSWLTIEADPELI--------FNTP--VHEKWQKAIQKLG 175 (178)
T ss_dssp HHHHH-----TTSEEEEECCHHHH--------HSSC--GGGHHHHHHHHTS
T ss_pred HHHHH-----cCCEEEecCCHHHh--------cCCC--HHHHHHHHHHHcC
Confidence 56665 47888876555543 3444 6788999988765
Done!