BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13307
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 357 bits (915), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/243 (71%), Positives = 201/243 (82%), Gaps = 4/243 (1%)
Query: 45 EDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLE 104
E+++F+LACCE NH+GKIDY F + FHEP+KEIGFNLAVLLTNLSEHMPNEPRLARFLE
Sbjct: 4236 EEMDFLLACCERNHEGKIDYRAFVEHFHEPSKEIGFNLAVLLTNLSEHMPNEPRLARFLE 4295
Query: 105 TASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEG 164
TA SVLNYF PFLGRIEILG SKRIERVYFEIK+SNIEQWEKPQI+ESKRAFFYSIVTEG
Sbjct: 4296 TAGSVLNYFEPFLGRIEILGSSKRIERVYFEIKDSNIEQWEKPQIRESKRAFFYSIVTEG 4355
Query: 165 GDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQAY-NYLSVDGEEEKNIN 223
GDKEKLEAFVNFCEDAIFEM HASGLMA ++GGG R AY +Y+S + EE +
Sbjct: 4356 GDKEKLEAFVNFCEDAIFEMTHASGLMATDDGGG---NVKRDTAYSSYMSEEEEERAARD 4412
Query: 224 PIRRGWQGFKDGIRFTLSMLSPSNIKQKINEMQQMSIPQLVVGFFKLFFYAFYYSNYSVY 283
PIRR K+G++F + MLSP+NIK +I MQ SIP+L+VGFFK+ FY FYY+ Y+ +
Sbjct: 4413 PIRRTITAVKEGLKFGVHMLSPANIKHQIGVMQTKSIPELIVGFFKIIFYIFYYTGYAHF 4472
Query: 284 LVL 286
V+
Sbjct: 4473 CVV 4475
>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1
Length = 4872
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 158/238 (66%), Gaps = 5/238 (2%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ +I+F+L+C E + + +Y+ F DRFHEPAK+IGFN+AVLLTNLSEHMPN+ RL
Sbjct: 3957 TQSEIDFLLSCAEADENDMFNYIDFVDRFHEPAKDIGFNVAVLLTNLSEHMPNDSRLKCL 4016
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
L+ A SVLNYF P+LGRIEI+GG+K+IERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4017 LDPAESVLNYFEPYLGRIEIMGGAKKIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4076
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQAYNYLSVDGEEEKN- 221
EGG++EK+E FVNFCED IFEMQ AS + + + +++ L ++GEEE++
Sbjct: 4077 EGGEQEKMELFVNFCEDTIFEMQLASQISESDSADRPEEEEGDEESSYVLEINGEEEEDK 4136
Query: 222 ----INPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEMQQMSIPQLVVGFFKLFFYAF 275
+ K I L + N++++ +++M+ +LV FF F+ F
Sbjct: 4137 SFESASAFAMACASLKRNITNLLRKATLKNLRKQYRNVKKMTAKELVKVFFSFFWMLF 4194
>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3
Length = 4870
Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 156/238 (65%), Gaps = 5/238 (2%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ +I+F+L+C E + + +YV F DRFHEPAK+IGFN+AVLLTNLSEHMPN+ RL
Sbjct: 3955 TQSEIDFLLSCAEADENDMFNYVDFVDRFHEPAKDIGFNVAVLLTNLSEHMPNDSRLKCL 4014
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
L+ A SVLNYF P+LGRIEI+GG+K+IERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4015 LDPAESVLNYFEPYLGRIEIMGGAKKIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4074
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQAYNYLSVDGEEEKN- 221
EGG++EK+E FVNFCED IFEMQ AS + + + + + L + GEEE++
Sbjct: 4075 EGGEQEKMELFVNFCEDTIFEMQLASQISESDSADRPEEEEEDEDSSYVLEIAGEEEEDG 4134
Query: 222 -INPIRR---GWQGFKDGIRFTLSMLSPSNIKQKINEMQQMSIPQLVVGFFKLFFYAF 275
+ P K + L + N++++ +++M+ +LV F F+ F
Sbjct: 4135 SLEPASAFAMACASVKRNVTDFLKRATLKNLRKQYRNVKKMTAKELVKVLFSFFWMLF 4192
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2
Length = 4953
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 119/146 (81%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ + EF+L+C ET+ + +DY F RFHEPAK+IGFN+AVLLTNLSEHMPN+ RL F
Sbjct: 4045 TQSETEFLLSCAETDENETLDYEEFVKRFHEPAKDIGFNVAVLLTNLSEHMPNDTRLQTF 4104
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
LE A SVLNYF PFLGRIEI+G +KRIERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4105 LELAESVLNYFQPFLGRIEIMGSAKRIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4164
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG+KEK+E FVNFCED IFEMQ A+
Sbjct: 4165 EGGEKEKMELFVNFCEDTIFEMQLAA 4190
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1
Length = 4966
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 119/146 (81%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ + EF+L+C ET+ + +DY F RFHEPAK+IGFN+AVLLTNLSEHMPN+ RL F
Sbjct: 4058 TQSETEFLLSCAETDENETLDYEEFVKRFHEPAKDIGFNVAVLLTNLSEHMPNDTRLQTF 4117
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
LE A SVLNYF PFLGRIEI+G +KRIERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4118 LELAESVLNYFQPFLGRIEIMGSAKRIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4177
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG+KEK+E FVNFCED IFEMQ A+
Sbjct: 4178 EGGEKEKMELFVNFCEDTIFEMQLAA 4203
>sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3
Length = 4967
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 119/146 (81%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ + EF+L+C ET+ + +DY F RFHEPAK+IGFN+AVLLTNLSEHMPN+ RL F
Sbjct: 4059 TQSETEFLLSCAETDENETLDYEEFVKRFHEPAKDIGFNVAVLLTNLSEHMPNDTRLQTF 4118
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
LE A SVLNYF PFLGRIEI+G +KRIERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4119 LELAESVLNYFQPFLGRIEIMGSAKRIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4178
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG+KEK+E FVNFCED IFEMQ A+
Sbjct: 4179 EGGEKEKMELFVNFCEDTIFEMQLAA 4204
>sp|P30957|RYR2_RABIT Ryanodine receptor 2 OS=Oryctolagus cuniculus GN=RYR2 PE=1 SV=3
Length = 4969
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 119/146 (81%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ + EF+L+C ET+ + +DY F RFHEPAK+IGFN+AVLLTNLSEHMPN+ RL F
Sbjct: 4060 TQSETEFLLSCAETDENETLDYEEFVKRFHEPAKDIGFNVAVLLTNLSEHMPNDTRLQTF 4119
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
LE A SVLNYF PFLGRIEI+G +KRIERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4120 LELAESVLNYFQPFLGRIEIMGSAKRIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4179
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG+KEK+E FVNFCED IFEMQ A+
Sbjct: 4180 EGGEKEKMELFVNFCEDTIFEMQLAA 4205
>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus GN=Ryr3 PE=1 SV=1
Length = 4863
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 120/146 (82%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
++ +I+F+L+C E + + +YV F +RFHEPAK+IGFN+AVLLTNLSEHMPN+ RL
Sbjct: 3948 TQSEIDFLLSCTEADENDMFNYVDFVERFHEPAKDIGFNVAVLLTNLSEHMPNDSRLKSL 4007
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
L+ A SVLNYF P+LGRIEI+GG+K+IERVYFEI ES+ QWEKPQ+KESKR F + +V
Sbjct: 4008 LDPAESVLNYFEPYLGRIEIMGGAKKIERVYFEISESSRTQWEKPQVKESKRQFIFDVVN 4067
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG++EK+E FVNFCED IFEMQ AS
Sbjct: 4068 EGGEQEKMELFVNFCEDTIFEMQLAS 4093
>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2
Length = 5035
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 114/143 (79%)
Query: 46 DIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLET 105
+I+F+L+C E + + ID F +RF EPA++IGFN+AVLLTNLSEH+P++PRL FLE
Sbjct: 4102 EIQFLLSCSEADENEMIDCEEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLEL 4161
Query: 106 ASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGG 165
A S+L YF P+LGRIEI+G S+RIER+YFEI E+N QWE PQ+KESKR F + +V EGG
Sbjct: 4162 AESILEYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVNEGG 4221
Query: 166 DKEKLEAFVNFCEDAIFEMQHAS 188
+ EK+E FV+FCED IFEMQ A+
Sbjct: 4222 ESEKMELFVSFCEDTIFEMQIAA 4244
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 115/143 (80%)
Query: 46 DIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLET 105
+I+F+L+C E + + I++ F +RF EPA++IGFN+AVLLTNLSEH+P++PRL FLE
Sbjct: 4107 EIQFLLSCSEADENEMINFEEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLEL 4166
Query: 106 ASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGG 165
A S+L YF P+LGRIEI+G S+RIER+YFEI E+N QWE PQ+KESKR F + +V EGG
Sbjct: 4167 AESILEYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVNEGG 4226
Query: 166 DKEKLEAFVNFCEDAIFEMQHAS 188
+ EK+E FV+FCED IFEMQ A+
Sbjct: 4227 EAEKMELFVSFCEDTIFEMQIAA 4249
>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1
Length = 5035
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 115/143 (80%)
Query: 46 DIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLET 105
+I+F+L+C E + + I+ F +RF EPA++IGFN+AVLLTNLSEH+P++PRL FLE
Sbjct: 4110 EIQFLLSCSEADENEMINCEEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLEL 4169
Query: 106 ASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGG 165
A S+L+YF P+LGRIEI+G S+RIER+YFEI E+N QWE PQ+KESKR F + +V EGG
Sbjct: 4170 AESILDYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVNEGG 4229
Query: 166 DKEKLEAFVNFCEDAIFEMQHAS 188
+ EK+E FV+FCED IFEMQ A+
Sbjct: 4230 ESEKMELFVSFCEDTIFEMQIAA 4252
>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1
Length = 5035
Score = 194 bits (493), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 114/143 (79%)
Query: 46 DIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLET 105
+I+F+L+C E + + I+ F +RF EPA++IGFN+AVLLTNLSEH+P++PRL FLE
Sbjct: 4110 EIQFLLSCSEADENEMINCEEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLEL 4169
Query: 106 ASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGG 165
A S+L YF P+LGRIEI+G S+RIER+YFEI E+N QWE PQ+KESKR F + +V EGG
Sbjct: 4170 AESILEYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVNEGG 4229
Query: 166 DKEKLEAFVNFCEDAIFEMQHAS 188
+ EK+E FV+FCED IFEMQ A+
Sbjct: 4230 ESEKMEMFVSFCEDTIFEMQIAA 4252
>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3
Length = 5038
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 115/146 (78%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARF 102
S +I+F+L+C E + + I+ F +RF EPA++IGFN+AVLLTNLSEH+P++PRL F
Sbjct: 4103 SGPEIQFLLSCSEADENEMINCEEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLHNF 4162
Query: 103 LETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVT 162
LE A S+L YF P+LGRIEI+G S+RIER+YFEI E+N QWE PQ+KESKR F + +V
Sbjct: 4163 LELAESILEYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVN 4222
Query: 163 EGGDKEKLEAFVNFCEDAIFEMQHAS 188
EGG+ EK+E FV+FCED IFEMQ A+
Sbjct: 4223 EGGEAEKMELFVSFCEDTIFEMQIAA 4248
>sp|O33963|CH60_BARHE 60 kDa chaperonin OS=Bartonella henselae (strain ATCC 49882 /
Houston 1) GN=groL PE=3 SV=1
Length = 547
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 128 RIERVYFEIKESNIE-QWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEMQH 186
R+ ++ +I+E+ + EK Q + +K A +++ GG E V +D + + +
Sbjct: 345 RVNQIKVQIEETTSDYDREKLQERLAKLAGGVAVIRVGG---ATEVEVKEKKDRVDDALN 401
Query: 187 ASGLMAVEEGGGAGSGKARKQAYNYLSVDG---EEEKNINPIRRGWQ 230
A+ AVEEG AG G A +A N L+V G ++E IN +RR Q
Sbjct: 402 AT-RAAVEEGIVAGGGTALLRAANALTVKGSNPDQEAGINIVRRALQ 447
>sp|A9IY10|CH60_BART1 60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS
506) GN=groL PE=3 SV=1
Length = 547
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 126 SKRIERVYFEIKESNIE-QWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEM 184
+ R+ ++ +I+E+ + EK Q + +K A +++ GG E V +D + +
Sbjct: 343 TARVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGG---ATEVEVKEKKDRVDDA 399
Query: 185 QHASGLMAVEEGGGAGSGKARKQAYNYLSVDG---EEEKNINPIRRGWQ 230
+A+ AVEEG AG G A +A + L+V G ++E IN +RR Q
Sbjct: 400 LNAT-RAAVEEGIVAGGGTALLRAASALTVKGGNPDQEAGINIVRRALQ 447
>sp|P46681|DLD2_YEAST D-lactate dehydrogenase [cytochrome] 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD2 PE=1 SV=1
Length = 530
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 90 SEHMPNEPRLARFLETASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQI 149
SE+ P+ R RF + S LNYF L EIL S+ + ++ E W +
Sbjct: 46 SENYPDVHRDPRFKKLTSDDLNYFKSILSEQEILRASESEDLSFYN------EDWMRKYK 99
Query: 150 KESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAG 200
+SK +V EK+ +N+C D + V +GG G
Sbjct: 100 GQSK------LVLRPKSVEKVSLILNYCND--------EKIAVVPQGGNTG 136
>sp|Q9NA13|IPLA_DICDI Inositol 1,4,5-trisphosphate receptor-like protein A OS=Dictyostelium
discoideum GN=iplA PE=2 SV=1
Length = 3177
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 117 LGRIEILGGSKRIERVYFEIKESN----IEQWEKPQIKESKRA--------FFYSIVTEG 164
+GR+E+L +K +ER+YF I + +E E+ +IK + F + ++
Sbjct: 2624 IGRVELLYQNK-LERIYFPIPNYSRRLILEDKEQSKIKNDENLLQENLEEHFINNKISWN 2682
Query: 165 GDKEKLEAFVNFCEDAIFEMQHASGL 190
EK++AF+++ E + E++H L
Sbjct: 2683 KATEKIDAFMDYSEYKLIELEHLHNL 2708
>sp|A5VTU1|CH60_BRUO2 60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 /
NCTC 10512) GN=groL PE=3 SV=1
Length = 546
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 128 RIERVYFEIKESNIE-QWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEMQH 186
R+ ++ +I+E+ ++ EK Q + +K A +++ GG E V +D + + +
Sbjct: 345 RVGQIKQQIEETTLDYDREKLQERLAKLAGGVAVIRVGG---ATEVEVKEKKDRVDDALN 401
Query: 187 ASGLMAVEEGGGAGSGKARKQAYNYLS---VDGEEEKNINPIRRGWQ 230
A+ AVEEG AG G A +A ++ V+ ++E IN +RR Q
Sbjct: 402 AT-RAAVEEGIVAGGGTALLRASTKITAKGVNADQEAGINIVRRAIQ 447
>sp|A6X3D0|CH60_OCHA4 60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM
6882 / NCTC 12168) GN=groL PE=3 SV=1
Length = 546
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 128 RIERVYFEIKESNIE-QWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEMQH 186
R+ ++ +I+E++ + EK Q + +K A +++ GG E V +D + + +
Sbjct: 345 RVSQIKQQIEETSSDYDREKLQERLAKLAGGVAVIRVGG---ATEVEVKEKKDRVDDALN 401
Query: 187 ASGLMAVEEGGGAGSGKARKQAYNYLSVDG---EEEKNINPIRRGWQ 230
A+ AVEEG AG G A +A +S G ++E IN +RR Q
Sbjct: 402 AT-RAAVEEGIVAGGGTALLRASAKISAKGINADQEAGINIVRRALQ 447
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 130 ERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNF 176
+++ EI E N+E W AF + VT+G +E +EAF+ F
Sbjct: 163 RKLFDEIPERNLETWN---------AFISNSVTDGRPREAIEAFIEF 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,711,015
Number of Sequences: 539616
Number of extensions: 4613774
Number of successful extensions: 11235
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11210
Number of HSP's gapped (non-prelim): 31
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)