Query psy13307
Match_columns 286
No_of_seqs 88 out of 90
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 16:07:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2243|consensus 100.0 2E-92 4.3E-97 730.9 10.2 243 41-284 4088-4338(5019)
2 PF13833 EF-hand_8: EF-hand do 96.3 0.0036 7.8E-08 43.1 2.8 31 42-72 22-52 (54)
3 cd05030 calgranulins Calgranul 92.9 0.084 1.8E-06 40.8 2.5 35 44-78 50-84 (88)
4 PF13499 EF-hand_7: EF-hand do 92.4 0.091 2E-06 37.1 2.0 26 44-69 39-64 (66)
5 PF00036 EF-hand_1: EF hand; 92.2 0.13 2.8E-06 33.1 2.3 26 46-71 1-26 (29)
6 cd05022 S-100A13 S-100A13: S-1 91.7 0.13 2.8E-06 40.7 2.3 32 42-73 43-75 (89)
7 cd05027 S-100B S-100B: S-100B 89.0 0.32 6.9E-06 38.0 2.4 34 41-74 47-80 (88)
8 cd05029 S-100A6 S-100A6: S-100 87.8 0.43 9.2E-06 37.3 2.4 30 42-71 48-77 (88)
9 cd05023 S-100A11 S-100A11: S-1 86.8 0.59 1.3E-05 36.7 2.7 35 43-77 50-84 (89)
10 cd00052 EH Eps15 homology doma 86.3 0.64 1.4E-05 32.2 2.4 30 43-72 31-60 (67)
11 cd05026 S-100Z S-100Z: S-100Z 84.3 0.81 1.8E-05 35.7 2.3 29 43-71 51-79 (93)
12 smart00054 EFh EF-hand, calciu 83.9 1 2.3E-05 24.9 2.1 26 46-71 1-26 (29)
13 COG5126 FRQ1 Ca2+-binding prot 83.7 0.98 2.1E-05 39.9 2.9 30 42-71 125-154 (160)
14 PF13202 EF-hand_5: EF hand; P 82.6 1.2 2.6E-05 27.7 2.2 20 50-69 4-23 (25)
15 cd00213 S-100 S-100: S-100 dom 81.1 1.4 3E-05 33.1 2.5 34 42-75 48-81 (88)
16 cd05025 S-100A1 S-100A1: S-100 78.9 1.7 3.7E-05 33.2 2.4 36 43-78 50-85 (92)
17 cd05031 S-100A10_like S-100A10 78.8 1.6 3.5E-05 33.6 2.2 31 42-72 48-78 (94)
18 cd00051 EFh EF-hand, calcium b 77.6 2.8 6E-05 26.9 2.8 29 41-69 32-60 (63)
19 KOG0027|consensus 71.9 4.1 8.8E-05 33.7 3.0 33 40-72 116-148 (151)
20 smart00027 EH Eps15 homology d 70.9 3.7 8.1E-05 31.6 2.4 33 42-74 41-73 (96)
21 PTZ00183 centrin; Provisional 60.9 8.1 0.00017 30.6 2.6 27 43-69 88-114 (158)
22 PF13405 EF-hand_6: EF-hand do 57.6 10 0.00022 23.8 2.2 25 47-71 2-26 (31)
23 smart00456 WW Domain with 2 co 57.1 6 0.00013 24.9 1.1 19 130-148 13-31 (32)
24 PTZ00184 calmodulin; Provision 55.5 11 0.00023 29.3 2.5 29 42-70 44-72 (149)
25 KOG4065|consensus 53.4 10 0.00022 33.2 2.2 25 47-71 119-143 (144)
26 cd05024 S-100A10 S-100A10: A s 53.1 11 0.00024 30.6 2.3 27 43-69 46-72 (91)
27 KOG0034|consensus 47.7 13 0.00029 33.3 2.2 28 46-73 148-175 (187)
28 KOG0031|consensus 46.8 18 0.00038 32.9 2.7 43 29-71 121-163 (171)
29 KOG0027|consensus 46.2 28 0.0006 28.8 3.7 42 31-72 30-71 (151)
30 PF04272 Phospholamban: Phosph 45.9 9.3 0.0002 28.5 0.7 13 169-181 28-40 (52)
31 KOG0030|consensus 45.6 16 0.00035 32.6 2.2 28 42-70 121-148 (152)
32 cd00201 WW Two conserved trypt 42.2 15 0.00032 22.6 1.1 19 130-148 12-30 (31)
33 PTZ00184 calmodulin; Provision 40.7 25 0.00055 27.2 2.5 28 43-70 118-145 (149)
34 TIGR01294 P_lamban phospholamb 39.5 13 0.00029 27.7 0.7 13 169-181 28-40 (52)
35 PF08726 EFhand_Ca_insen: Ca2+ 37.0 17 0.00037 28.2 1.0 12 60-71 56-67 (69)
36 COG2867 Oligoketide cyclase/li 32.5 16 0.00034 32.4 0.2 31 146-179 1-36 (146)
37 PF00397 WW: WW domain; Inter 32.2 28 0.00062 22.4 1.3 18 130-147 14-31 (31)
38 PF12763 EF-hand_4: Cytoskelet 31.7 26 0.00056 28.6 1.3 41 29-69 24-67 (104)
39 cd00252 SPARC_EC SPARC_EC; ext 31.6 41 0.00088 27.9 2.4 30 45-74 80-109 (116)
40 PF08976 DUF1880: Domain of un 30.5 50 0.0011 28.5 2.8 30 43-72 5-34 (118)
41 PRK13733 conjugal transfer pro 30.3 31 0.00068 31.3 1.7 18 130-150 154-171 (171)
42 KOG0036|consensus 28.4 33 0.00072 35.3 1.7 25 47-71 53-77 (463)
43 PTZ00183 centrin; Provisional 27.7 59 0.0013 25.7 2.7 29 42-70 50-78 (158)
44 PTZ00218 40S ribosomal protein 24.7 26 0.00056 26.5 0.1 12 70-81 40-51 (54)
45 PF12872 OST-HTH: OST-HTH/LOTU 23.2 61 0.0013 23.4 1.8 36 56-91 18-59 (74)
46 PHA03229 DNA packaging protein 22.8 29 0.00063 30.4 0.1 53 14-72 26-78 (132)
47 PF02282 Herpes_UL42: DNA poly 21.0 54 0.0012 29.0 1.4 30 128-157 43-79 (156)
48 PHA02689 ORF051 putative membr 20.7 57 0.0012 28.5 1.4 43 4-52 11-58 (128)
49 PLN02964 phosphatidylserine de 20.4 1.1E+02 0.0023 32.8 3.6 39 31-69 160-203 (644)
50 KOG3533|consensus 20.3 75 0.0016 37.7 2.5 107 75-191 2127-2242(2706)
No 1
>KOG2243|consensus
Probab=100.00 E-value=2e-92 Score=730.94 Aligned_cols=243 Identities=48% Similarity=0.806 Sum_probs=218.8
Q ss_pred ccChhhHHHHHhccccCCCCceehhhHHHhhcchhhhhchhHHHHhhhccccCCCChhHHHHHHHhhhhhhcccccceeE
Q psy13307 41 FSSREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLETASSVLNYFHPFLGRI 120 (286)
Q Consensus 41 ~~t~~EI~FLLsC~e~n~n~~idY~eF~eRFhePAkdIGFNlAVLLTNLsEHmP~D~RL~~FLe~A~svL~YFeP~LGRI 120 (286)
-|||+||+|||||+|+|+|+|+||++|++|||||||||||||||||||||||||||+||++||++|+||||||+||||||
T Consensus 4088 ~ytqse~dfllscae~dend~~~y~dfv~rfhepakdigfnvavlltnlsehmpndsrlk~~ld~aesvlnyfep~lgri 4167 (5019)
T KOG2243|consen 4088 HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNVAVLLTNLSEHMPNDSRLKCFLDLAESVLNYFEPFLGRI 4167 (5019)
T ss_pred cchhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcchhhhhhhhHhhCCCchhHHHHHhHHHHHHHhhhhhccee
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceeEEEEEecccchhhhccccccchhhhhhHHhhccCCcchhhhHHhhhhhHHHHHHHhhccccccccCCCCC
Q psy13307 121 EILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEGGDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAG 200 (286)
Q Consensus 121 EImGsskRIERVYFeIseS~~~QWEkPQVKESKRqFlfdVVnEGGekeKmE~FVNFCEDTIFEMq~AsqIS~~d~~~~~~ 200 (286)
||||++|||||||||||||+|+|||||||||||||||||||||||++||||+|||||||||||||+|+|||++|.+++ +
T Consensus 4168 eimg~akkiervyfeisessrtqwekpqvkeskrqfifdvvneggekekmelfvnfcedtifemqlaaqisesd~~dr-p 4246 (5019)
T KOG2243|consen 4168 EIMGGAKKIERVYFEISESSRTQWEKPQVKESKRQFIFDVVNEGGEKEKMELFVNFCEDTIFEMQLAAQISESDLADR-P 4246 (5019)
T ss_pred eeeccceeeeEEEEEecccccccccccchhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhccccccccC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987653 2
Q ss_pred Cchhhhhhccc-cc--cCccccc-----CCCcccccccccccchhhhhcccCchhHHHHHHHHhcCChhHHHHHHHHHHH
Q psy13307 201 SGKARKQAYNY-LS--VDGEEEK-----NINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEMQQMSIPQLVVGFFKLFF 272 (286)
Q Consensus 201 ~~~~~~~~~~~-~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ls~~nlr~~~~~lr~mt~~e~~~~~~~~~~ 272 (286)
++++++++..+ ++ +++++++ +..++..+|.++++++..++.+.|++|||||+|++++||.++++.++|+++|
T Consensus 4247 e~~~~~edssyvle~~~~eee~~~l~~fs~~~~~~a~~a~k~ni~~~lk~~slk~lkkq~k~vkkmt~kdlv~~~fs~~w 4326 (5019)
T KOG2243|consen 4247 EEEAEDEDSSYVLEIAGEEEEDGRLAFFSALAFAMACAALKRNILDFLKMASLKNLKKQMKKVKKMTAKDLVKAFFSFFW 4326 (5019)
T ss_pred hhhhcccchhhHHhhcCccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23333332222 11 1222222 2345778899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceeEe
Q psy13307 273 YAFYYSNYSVYL 284 (286)
Q Consensus 273 ~~~~~~~~~~~~ 284 (286)
++|+++++++++
T Consensus 4327 ~if~~l~~~~~s 4338 (5019)
T KOG2243|consen 4327 MIFMGLFHFLAS 4338 (5019)
T ss_pred HHHHHHHHHHHH
Confidence 999988776544
No 2
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.31 E-value=0.0036 Score=43.13 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.8
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
.|.+|++-|++..+.|+||+|+|+||+.-+.
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 7899999999999999999999999998763
No 3
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=92.87 E-value=0.084 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=32.1
Q ss_pred hhhHHHHHhccccCCCCceehhhHHHhhcchhhhh
Q psy13307 44 REDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEI 78 (286)
Q Consensus 44 ~~EI~FLLsC~e~n~n~~idY~eF~eRFhePAkdI 78 (286)
+++++-++...+.|.||.|+|++|+.-....++++
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999888777654
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.43 E-value=0.091 Score=37.08 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.4
Q ss_pred hhhHHHHHhccccCCCCceehhhHHH
Q psy13307 44 REDIEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 44 ~~EI~FLLsC~e~n~n~~idY~eF~e 69 (286)
.++++.++.+.++|.||.|+|.||..
T Consensus 39 ~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 39 DEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 45778889999999999999999975
No 5
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=92.16 E-value=0.13 Score=33.15 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.4
Q ss_pred hHHHHHhccccCCCCceehhhHHHhh
Q psy13307 46 DIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 46 EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
|++-+..-.|.|+||.||++||.+-+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 56777888999999999999998754
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=91.71 E-value=0.13 Score=40.66 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred cCh-hhHHHHHhccccCCCCceehhhHHHhhcc
Q psy13307 42 SSR-EDIEFMLACCETNHDGKIDYVGFTDRFHE 73 (286)
Q Consensus 42 ~t~-~EI~FLLsC~e~n~n~~idY~eF~eRFhe 73 (286)
.|. +|++=|+...++|.||+|||+||+.-..-
T Consensus 43 ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 43 LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 455 89999999999999999999999876543
No 7
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=89.00 E-value=0.32 Score=38.03 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.9
Q ss_pred ccChhhHHHHHhccccCCCCceehhhHHHhhcch
Q psy13307 41 FSSREDIEFMLACCETNHDGKIDYVGFTDRFHEP 74 (286)
Q Consensus 41 ~~t~~EI~FLLsC~e~n~n~~idY~eF~eRFheP 74 (286)
--|++|++=+++..+.|.||+|||+||..-...=
T Consensus 47 ~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 47 IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3588899999999999999999999998654433
No 8
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=87.76 E-value=0.43 Score=37.33 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=27.0
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
-|++|++=++.=.+.|+||+|||.||+.-.
T Consensus 48 ~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 48 LQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred CCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 488999999999999999999999998654
No 9
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=86.80 E-value=0.59 Score=36.69 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.8
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHhhcchhhh
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKE 77 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eRFhePAkd 77 (286)
+++|++=++.=.+.|.||.|||+||+.-.-.-|..
T Consensus 50 ~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 50 DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 46789999998999999999999999766554443
No 10
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.35 E-value=0.64 Score=32.17 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=27.2
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
+.++++-++...+.|+||.|+|.+|+.-++
T Consensus 31 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 31 PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 889999999999999999999999987553
No 11
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=84.29 E-value=0.81 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=25.9
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHhh
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
++.+++=++.=.+.|+||.|||+||+.-.
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 66789999999999999999999997654
No 12
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=83.95 E-value=1 Score=24.86 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=21.0
Q ss_pred hHHHHHhccccCCCCceehhhHHHhh
Q psy13307 46 DIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 46 EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
|++-+++..+.|.+|.|++.+|..=+
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 45667888899999999999987543
No 13
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=83.72 E-value=0.98 Score=39.93 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=27.3
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
.+++|++-|+.-++.|.||.|||++|++.+
T Consensus 125 ~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 125 LSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 478999999999999999999999999865
No 14
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=82.59 E-value=1.2 Score=27.67 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.5
Q ss_pred HHhccccCCCCceehhhHHH
Q psy13307 50 MLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 50 LLsC~e~n~n~~idY~eF~e 69 (286)
.+...++|.||+|+.+||..
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 56788999999999999974
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=81.14 E-value=1.4 Score=33.13 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.1
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhhcchh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRFHEPA 75 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRFhePA 75 (286)
.+.++|+-++.=.+.|+||.|+|.+|+.-+..=|
T Consensus 48 ~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 48 KDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred CCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3689999999999999999999999988765433
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=78.91 E-value=1.7 Score=33.23 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=30.4
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHhhcchhhhh
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEI 78 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eRFhePAkdI 78 (286)
|+++++=++.=.+.|+||.|||.+|..-....|.-+
T Consensus 50 s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 50 DADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 788999999999999999999999987666555443
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=78.78 E-value=1.6 Score=33.57 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=27.5
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
.|.+|++-++.=.+.|.||.|||.+|..-+.
T Consensus 48 ~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 48 KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4889999999999999999999999986553
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=77.61 E-value=2.8 Score=26.88 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=24.3
Q ss_pred ccChhhHHHHHhccccCCCCceehhhHHH
Q psy13307 41 FSSREDIEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 41 ~~t~~EI~FLLsC~e~n~n~~idY~eF~e 69 (286)
-.+.+++.-++...+.|++|.|+|.+|..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 32 GLSEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred CCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 34566778888899999999999999975
No 19
>KOG0027|consensus
Probab=71.92 E-value=4.1 Score=33.72 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=28.7
Q ss_pred hccChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 40 FFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 40 ~~~t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
--.|.+|++-++.=++.|.||+|||++|+.-+.
T Consensus 116 ~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 116 EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 345688999999999999999999999998664
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=70.89 E-value=3.7 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.7
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHhhcch
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDRFHEP 74 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eRFheP 74 (286)
.+.+|++-+++-.+.|.||.|||+||..-++.=
T Consensus 41 ~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 41 LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 478899999999999999999999998766543
No 21
>PTZ00183 centrin; Provisional
Probab=60.86 E-value=8.1 Score=30.62 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=14.9
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHH
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~e 69 (286)
+.+++..+....+.|++|.|++.||..
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~ 114 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKR 114 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 344455555555666666666655553
No 22
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=57.57 E-value=10 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHhccccCCCCceehhhHHHhh
Q psy13307 47 IEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 47 I~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
+.-+..--+.|+||.|+.+||..=+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 4455566799999999999998654
No 23
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=57.13 E-value=6 Score=24.85 Aligned_cols=19 Identities=42% Similarity=0.807 Sum_probs=16.8
Q ss_pred eEEEEEecccchhhhcccc
Q psy13307 130 ERVYFEIKESNIEQWEKPQ 148 (286)
Q Consensus 130 ERVYFeIseS~~~QWEkPQ 148 (286)
-|+||--..+...||++|.
T Consensus 13 g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 13 GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCEEEEECCCCCEEcCCCC
Confidence 4788888899999999996
No 24
>PTZ00184 calmodulin; Provisional
Probab=55.46 E-value=11 Score=29.29 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=25.0
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDR 70 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eR 70 (286)
.+.+++.-++...+.|.+|.|||++|..-
T Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 72 (149)
T PTZ00184 44 PTEAELQDMINEVDADGNGTIDFPEFLTL 72 (149)
T ss_pred CCHHHHHHHHHhcCcCCCCcCcHHHHHHH
Confidence 45678899999999999999999999853
No 25
>KOG4065|consensus
Probab=53.36 E-value=10 Score=33.24 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHhccccCCCCceehhhHHHhh
Q psy13307 47 IEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 47 I~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
||=.|.=-+-|.||.|||-||..|-
T Consensus 119 iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 119 IDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHHHhcccccCCCceeeHHHHHhhc
Confidence 4566777889999999999999874
No 26
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=53.12 E-value=11 Score=30.59 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=22.9
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHH
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~e 69 (286)
.+.-++=+|.=-|.|+||.||+.||..
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~ 72 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFS 72 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 356677788888999999999999974
No 27
>KOG0034|consensus
Probab=47.70 E-value=13 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.3
Q ss_pred hHHHHHhccccCCCCceehhhHHHhhcc
Q psy13307 46 DIEFMLACCETNHDGKIDYVGFTDRFHE 73 (286)
Q Consensus 46 EI~FLLsC~e~n~n~~idY~eF~eRFhe 73 (286)
-+++++.=+|.|.||+|+++||.+....
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 3688899999999999999999987643
No 28
>KOG0031|consensus
Probab=46.84 E-value=18 Score=32.89 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=32.7
Q ss_pred hhHHHHhhhhhhccChhhHHHHHhccccCCCCceehhhHHHhh
Q psy13307 29 DFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 29 ~~~~~~~~~~~~~~t~~EI~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
|.|.-.+.-.-==+|++|++-++.-+-.|.+|.+||..|+.-.
T Consensus 121 d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 121 DYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 3444433333344689999999999999999999999998654
No 29
>KOG0027|consensus
Probab=46.18 E-value=28 Score=28.78 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHhhhhhhccChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 31 LIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 31 ~~~~~~~~~~~~t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
|-.|+-.+-.-.|.+|++-+++=.++|.||.||+++|+.-..
T Consensus 30 l~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~ 71 (151)
T KOG0027|consen 30 LGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLME 71 (151)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 333444444446899999999999999999999999987654
No 30
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=45.87 E-value=9.3 Score=28.47 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=9.5
Q ss_pred hhhHHhhhhhHHH
Q psy13307 169 KLEAFVNFCEDAI 181 (286)
Q Consensus 169 KmE~FVNFCEDTI 181 (286)
--|+|||||---|
T Consensus 28 lqelfvnfclili 40 (52)
T PF04272_consen 28 LQELFVNFCLILI 40 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3589999996443
No 31
>KOG0030|consensus
Probab=45.59 E-value=16 Score=32.65 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=22.8
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDR 70 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eR 70 (286)
.|.+|.+=|| .--.|.||.|||+.|+..
T Consensus 121 l~eeEVe~Ll-ag~eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 121 LTEEEVEELL-AGQEDSNGCINYEAFVKH 148 (152)
T ss_pred ccHHHHHHHH-ccccccCCcCcHHHHHHH
Confidence 4778888888 455688999999999863
No 32
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=42.21 E-value=15 Score=22.57 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=16.3
Q ss_pred eEEEEEecccchhhhcccc
Q psy13307 130 ERVYFEIKESNIEQWEKPQ 148 (286)
Q Consensus 130 ERVYFeIseS~~~QWEkPQ 148 (286)
-|+||==.++...||+.|.
T Consensus 12 g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 12 GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCEEEEECCCCCEeCCCCC
Confidence 4788888889999999995
No 33
>PTZ00184 calmodulin; Provisional
Probab=40.67 E-value=25 Score=27.23 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=19.5
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHh
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDR 70 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eR 70 (286)
+.++++=++.-.+.|.+|.|+|.||..-
T Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 118 TDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred CHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 5566666666667777888888888653
No 34
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=39.54 E-value=13 Score=27.67 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=9.5
Q ss_pred hhhHHhhhhhHHH
Q psy13307 169 KLEAFVNFCEDAI 181 (286)
Q Consensus 169 KmE~FVNFCEDTI 181 (286)
--|+|||||---|
T Consensus 28 lq~lfvnf~lili 40 (52)
T TIGR01294 28 LQNLFINFCLILI 40 (52)
T ss_pred HHHHHHHHHHHHH
Confidence 4589999996443
No 35
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=36.99 E-value=17 Score=28.17 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=10.5
Q ss_pred CceehhhHHHhh
Q psy13307 60 GKIDYVGFTDRF 71 (286)
Q Consensus 60 ~~idY~eF~eRF 71 (286)
|.+||+.|++.+
T Consensus 56 ~~~DY~~f~~~l 67 (69)
T PF08726_consen 56 GAYDYESFTNSL 67 (69)
T ss_dssp TEEECHHHHCCC
T ss_pred CCcCHHHHHHHH
Confidence 789999999865
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=32.45 E-value=16 Score=32.37 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=24.9
Q ss_pred cccccch-----hhhhhHHhhccCCcchhhhHHhhhhhH
Q psy13307 146 KPQIKES-----KRAFFYSIVTEGGDKEKLEAFVNFCED 179 (286)
Q Consensus 146 kPQVKES-----KRqFlfdVVnEGGekeKmE~FVNFCED 179 (286)
+||+.-| +-+.+|+.||+ -+.-+.|+++|++
T Consensus 1 m~~~~~s~lv~y~a~~mF~LV~d---V~~YP~FlP~C~~ 36 (146)
T COG2867 1 MPQIERTALVPYSASQMFDLVND---VESYPEFLPWCSA 36 (146)
T ss_pred CCeeEeeeeccCCHHHHHHHHHH---HHhCchhcccccc
Confidence 4666666 56788999976 7889999999974
No 37
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=32.17 E-value=28 Score=22.35 Aligned_cols=18 Identities=39% Similarity=0.813 Sum_probs=15.8
Q ss_pred eEEEEEecccchhhhccc
Q psy13307 130 ERVYFEIKESNIEQWEKP 147 (286)
Q Consensus 130 ERVYFeIseS~~~QWEkP 147 (286)
-|+||-=..+..+||+.|
T Consensus 14 g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 14 GRPYYYNHETGESQWERP 31 (31)
T ss_dssp SEEEEEETTTTEEESSST
T ss_pred CCEEEEeCCCCCEEeCCC
Confidence 478888889999999998
No 38
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=31.69 E-value=26 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=26.1
Q ss_pred hhHHHHhhhhhhc---cChhhHHHHHhccccCCCCceehhhHHH
Q psy13307 29 DFLIGCILFFFFF---SSREDIEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 29 ~~~~~~~~~~~~~---~t~~EI~FLLsC~e~n~n~~idY~eF~e 69 (286)
..+-|--.--||. ...+...=+-.-+|.|+||++|..||+=
T Consensus 24 g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 24 GKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp TEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred CeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 4444444443333 3445555556789999999999999973
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=31.59 E-value=41 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=21.5
Q ss_pred hhHHHHHhccccCCCCceehhhHHHhhcch
Q psy13307 45 EDIEFMLACCETNHDGKIDYVGFTDRFHEP 74 (286)
Q Consensus 45 ~EI~FLLsC~e~n~n~~idY~eF~eRFheP 74 (286)
+.++-++.=+++|.||.|+++||.+=|..|
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 334434444499999999999999888444
No 40
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=30.53 E-value=50 Score=28.50 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=21.5
Q ss_pred ChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 43 SREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 43 t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
|.++-|=|-+=.-.|..|.|.|.||..||.
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 556666777778899999999999999997
No 41
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=30.29 E-value=31 Score=31.29 Aligned_cols=18 Identities=50% Similarity=0.977 Sum_probs=15.1
Q ss_pred eEEEEEecccchhhhcccccc
Q psy13307 130 ERVYFEIKESNIEQWEKPQIK 150 (286)
Q Consensus 130 ERVYFeIseS~~~QWEkPQVK 150 (286)
..|||+++++ +|.+|+|+
T Consensus 154 ~~Vyfvv~~s---~W~~pr~~ 171 (171)
T PRK13733 154 SSVFFVIKPS---AWGKPRIN 171 (171)
T ss_pred ceEEEEEccc---cccccccC
Confidence 7899999997 69998763
No 42
>KOG0036|consensus
Probab=28.45 E-value=33 Score=35.26 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=21.7
Q ss_pred HHHHHhccccCCCCceehhhHHHhh
Q psy13307 47 IEFMLACCETNHDGKIDYVGFTDRF 71 (286)
Q Consensus 47 I~FLLsC~e~n~n~~idY~eF~eRF 71 (286)
+.-+++-+++|.||.+||.||..-.
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHH
Confidence 4668999999999999999998643
No 43
>PTZ00183 centrin; Provisional
Probab=27.69 E-value=59 Score=25.71 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=22.6
Q ss_pred cChhhHHHHHhccccCCCCceehhhHHHh
Q psy13307 42 SSREDIEFMLACCETNHDGKIDYVGFTDR 70 (286)
Q Consensus 42 ~t~~EI~FLLsC~e~n~n~~idY~eF~eR 70 (286)
.+..+++=++.=.+.|.+|.|+|.+|..-
T Consensus 50 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 78 (158)
T PTZ00183 50 PKKEEIKQMIADVDKDGSGKIDFEEFLDI 78 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 35566777777788899999999999853
No 44
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=24.68 E-value=26 Score=26.50 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.2
Q ss_pred hhcchhhhhchh
Q psy13307 70 RFHEPAKEIGFN 81 (286)
Q Consensus 70 RFhePAkdIGFN 81 (286)
=|.|.|+||||.
T Consensus 40 CFRe~A~~iGF~ 51 (54)
T PTZ00218 40 CFRENAELIGFH 51 (54)
T ss_pred HHHHhhHhcCee
Confidence 388999999994
No 45
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=23.21 E-value=61 Score=23.40 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=23.8
Q ss_pred cCCCCceehhhHHHhhcc-----hhhhhch-hHHHHhhhccc
Q psy13307 56 TNHDGKIDYVGFTDRFHE-----PAKEIGF-NLAVLLTNLSE 91 (286)
Q Consensus 56 ~n~n~~idY~eF~eRFhe-----PAkdIGF-NlAVLLTNLsE 91 (286)
.++||.+...++-..+.+ +.+++|| ++.-||-++++
T Consensus 18 ~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~ 59 (74)
T PF12872_consen 18 KGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPD 59 (74)
T ss_dssp CTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TT
T ss_pred cCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCC
Confidence 445788998877666554 7788899 67777755444
No 46
>PHA03229 DNA packaging protein UL33; Provisional
Probab=22.77 E-value=29 Score=30.40 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=38.3
Q ss_pred hhhhhhhccccccchhhHHHHhhhhhhccChhhHHHHHhccccCCCCceehhhHHHhhc
Q psy13307 14 HELYAKQLSFIPETADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72 (286)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~EI~FLLsC~e~n~n~~idY~eF~eRFh 72 (286)
.+|++|-++ ++-||---+-.+.+|--..|+|||.++.-+ |.++||--|+.|+.
T Consensus 26 ~~L~~~Y~~--~~~~~~~~~~~~iwFE~llP~eiE~i~PTT----DaKLNyLs~tqrLA 78 (132)
T PHA03229 26 ESLEARYVS--RDDADGGAGDAAVWFEDLTPVELEVVFPTT----DAKLNYLSRTQRLA 78 (132)
T ss_pred HHHHHHHcc--CccccccccceeeeecccCchHHHhhccch----HHHHHHHHHHHHHH
Confidence 367777664 444444444556678889999999999544 56999999998863
No 47
>PF02282 Herpes_UL42: DNA polymerase processivity factor (UL42); InterPro: IPR003202 The DNA polymerase processivity factor (UL42) of Human herpesvirus 1 (HHV-1) forms a heterodimer with UL30 to create the viral DNA polymerase complex. UL42 functions to increase the processivity of polymerisation and makes little contribution to the catalytic activity of the polymerase.; GO: 0003677 DNA binding, 0006260 DNA replication; PDB: 1DML_G.
Probab=21.02 E-value=54 Score=29.01 Aligned_cols=30 Identities=30% Similarity=0.690 Sum_probs=21.6
Q ss_pred ceeEEEEEecccchhh--hccc-----cccchhhhhh
Q psy13307 128 RIERVYFEIKESNIEQ--WEKP-----QIKESKRAFF 157 (286)
Q Consensus 128 RIERVYFeIseS~~~Q--WEkP-----QVKESKRqFl 157 (286)
-=|+|||.|.++.-++ |.-| -..+++|.+|
T Consensus 43 ~~~~V~f~i~~~~~~~y~w~~p~a~~la~~d~~~~Ll 79 (156)
T PF02282_consen 43 GGEQVYFPIREEGFSSYPWNGPPAVFLANVDGRRSLL 79 (156)
T ss_dssp TTEEEEEEEECGGCCCEE--SS-EEEESECCCTEETT
T ss_pred CceEEEEEcCHHHcccCccCCcchheecccchhHHHH
Confidence 4589999999998887 8888 4566676654
No 48
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=20.67 E-value=57 Score=28.54 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=27.8
Q ss_pred cccccccc-chhhhhhhhccccccc----hhhHHHHhhhhhhccChhhHHHHHh
Q psy13307 4 LTAVQDEP-IKHELYAKQLSFIPET----ADFLIGCILFFFFFSSREDIEFMLA 52 (286)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~EI~FLLs 52 (286)
+|.|=-|| +||++..-+ +-| -..++.|+|.++|| .+||-++++
T Consensus 11 ftPVFIEPt~kHslL~~~----kY~~Iv~FEi~va~~L~~~FF--k~Ei~~~f~ 58 (128)
T PHA02689 11 LTPVFVEPTIAHSLLRAE----SYLAIAVLELLLALALALVFF--RDELGALFR 58 (128)
T ss_pred eeeeEeccchhhhhhccc----hhHHHHHHHHHHHHHHHHHHH--HHHHHHHhc
Confidence 45555555 799885422 112 24467788888888 578888887
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=20.43 E-value=1.1e+02 Score=32.82 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=29.5
Q ss_pred HHHHhhhhhh--ccChhh---HHHHHhccccCCCCceehhhHHH
Q psy13307 31 LIGCILFFFF--FSSRED---IEFMLACCETNHDGKIDYVGFTD 69 (286)
Q Consensus 31 ~~~~~~~~~~--~~t~~E---I~FLLsC~e~n~n~~idY~eF~e 69 (286)
++|.++--.. +.|..| ++-++.-.|.|.||.|||.||..
T Consensus 160 iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~ 203 (644)
T PLN02964 160 VVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSD 203 (644)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 3566655443 577777 67778888999999999999984
No 50
>KOG3533|consensus
Probab=20.28 E-value=75 Score=37.70 Aligned_cols=107 Identities=24% Similarity=0.438 Sum_probs=80.8
Q ss_pred hhhhchhHHHHhhhccccCCCChhHHHHHHH--------hhhhhhcccccceeEEEecCCcceeEEEEEecccchhhhcc
Q psy13307 75 AKEIGFNLAVLLTNLSEHMPNEPRLARFLET--------ASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEK 146 (286)
Q Consensus 75 AkdIGFNlAVLLTNLsEHmP~D~RL~~FLe~--------A~svL~YFeP~LGRIEImGsskRIERVYFeIseS~~~QWEk 146 (286)
-++.|-|+-+|--+|+.| |-.|+..|+. .+.-|+|+.-.-..|||.-..+..|+|-|.|-.= -++
T Consensus 2127 PreVGHNIYILahQLarH---nkeLq~~Lk~~~~~~~~~~~eaL~yYa~hTaQIEIVR~DRtmEqiVFPip~I--Cey-- 2199 (2706)
T KOG3533|consen 2127 PREVGHNIYILAHQLARH---NKELQIWLKPSDEKKDDLTREALNYYAEHTAQIEIVRRDRTLEQIVFPIPDI--CEY-- 2199 (2706)
T ss_pred HHHcCchHHHHHHHHHHh---hHHHHHHhCCcCCcchhhhHHHHHHHHhccceEEEEecccchhheeecchhH--HHH--
Confidence 479999999999999876 6677777765 3456999999999999999999999999998531 111
Q ss_pred ccccchhhhhhHHhhccCCcch-hhhHHhhhhhHHHHHHHhhcccc
Q psy13307 147 PQIKESKRAFFYSIVTEGGDKE-KLEAFVNFCEDAIFEMQHASGLM 191 (286)
Q Consensus 147 PQVKESKRqFlfdVVnEGGeke-KmE~FVNFCEDTIFEMq~AsqIS 191 (286)
.-||||-..+..- |-.+++ |.-.|..=-|+.-=||.--..+.
T Consensus 2200 -LT~dtK~rv~ntt--ErDeQGSKV~dFFd~~e~m~nEM~WQrklr 2242 (2706)
T KOG3533|consen 2200 -LTKDTKDRVYNTT--ERDEQGSKVTDFFDEWETMYNEMIWQRKLR 2242 (2706)
T ss_pred -hhhccceeeeccc--ccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3478886554433 334454 88888888888888887655544
Done!