RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13307
(286 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 55/326 (16%), Positives = 99/326 (30%), Gaps = 99/326 (30%)
Query: 6 AVQDEPI-KHELYAKQLSFI-----PETA---DFLIGCILFFFF--FSSREDIEFMLACC 54
A DEP EL K L ++ P D ++ L F + DI + A
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 55 ETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLETASSVL---- 110
+D + + E K + A ++ + L R + ++ L
Sbjct: 109 LQENDTTL------VKTKELIKN--YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 111 -------NYF----------HPFLGRI---------EILGGSKRIERVYFEIKESNIEQW 144
+YF H +G + E++ + E+V+ + NI +W
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEW 218
Query: 145 -EKPQIKESKRAFFYSI--------VTEGGDKEKLEAFVNFCEDAIF---EM-QHASGLM 191
E P K + SI V + L +V + F E+ + G
Sbjct: 219 LENPSNTPDK-DYLLSIPISCPLIGVIQ------LAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 192 AVEEG-------GGAGSG----KARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTL 240
+G S + ++A L + G + +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF---------------FIGVRCYEAYPN 316
Query: 241 SMLSPSNIKQKI-NEMQQMSIPQLVV 265
+ L PS ++ + N S P L +
Sbjct: 317 TSLPPSILEDSLENNEGVPS-PMLSI 341
Score = 34.3 bits (78), Expect = 0.048
Identities = 46/264 (17%), Positives = 77/264 (29%), Gaps = 87/264 (32%)
Query: 15 ELY-----AKQL-----SFIPETADFLIGCI-------LFFFFFSS-----REDIEFMLA 52
+LY A+ + + +T F I I L F RE+ +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--YSAM 1691
Query: 53 CCETNHDGKIDYVGFTDRFHEPAKEIGFN-----L--------AVLLTNLS--EHMPNE- 96
ET DGK+ +E + F L A+ L + E + ++
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 97 --PRLARF-------------------LETASSVLNY----FHPFLGRIEILGGSKRI-- 129
P A F +E+ V+ Y + R E+ + +
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 130 ---ERVYFEIKESNIEQWEKPQIKESKRAFFYSIV---TEG------GDKEKLEAFVNFC 177
RV + ++ + K + + IV E GD L+ N
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTG--WLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 178 EDA------IFEMQHASGLMAVEE 195
I E+Q + L VE
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 29.2 bits (65), Expect = 1.8
Identities = 36/194 (18%), Positives = 55/194 (28%), Gaps = 61/194 (31%)
Query: 50 MLACCETNHDGKIDYVGFTDRFHEPAKE---IG-FN-------------LAVLLTNLSE- 91
ML+ + DYV T+ H PA + I N L L L +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 92 ---------HMPNEPR----LARFLETASSVLNYFH-PFLGRIEILGGSKRIERVYFEIK 137
+P R RFL AS FH L + + ++
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASP----FHSHLLVPAS--------DLINKDLV 444
Query: 138 ESNIEQWEKPQIKESKRAFFYSIVTEGGDKEKLEAFV--NFCEDAIFEMQ-------HAS 188
++N+ + I+ Y G D L + D I +
Sbjct: 445 KNNVS-FNAKDIQIP----VYDTFD-GSDLRVLSGSISERIV-DCIIRLPVKWETTTQFK 497
Query: 189 GLMAVEEGGGAGSG 202
++ G G SG
Sbjct: 498 ATHILDFGPGGASG 511
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 54/230 (23%)
Query: 6 AVQDEPIKHELYAKQLSFIPETADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYV 65
V + +++ +LS P +A + +F + D+ ++ +
Sbjct: 364 NVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 66 GFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRL-ARFLE-------------TASSVLN 111
T + L + NE L ++ +
Sbjct: 423 ESTISIPS-----------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 112 YFHPFLGR----IEILGGSKRIERVYFEIK--ESNIEQ----WEKP--------QIKESK 153
YF+ +G IE V+ + + E I W Q+K K
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 154 RAFFYSIVTEGGDKEKLEAFVNF---CEDAIFEMQHAS----GLMAVEEG 196
Y + + + A ++F E+ + ++ LMA +E
Sbjct: 532 P---YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 33.3 bits (75), Expect = 0.11
Identities = 46/263 (17%), Positives = 80/263 (30%), Gaps = 69/263 (26%)
Query: 45 EDIEFMLACCETNHDGKIDYVGFTDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLARFLE 104
+D++ M + + ID++ G L L E + +F+E
Sbjct: 36 KDVQDMPKSILSKEE--IDHI-----IMSKDAVSG--TLRLFWTLLSK--QEEMVQKFVE 84
Query: 105 TASSVLNYFHPFL-GRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTE 163
+NY FL I+ + + + + + Q+ +K V+
Sbjct: 85 EVLR-INY--KFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVF-AKYN-----VSR 133
Query: 164 GGDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQ--AYNYLSVDGEEEKN 221
KL A+ E++ A + ++ G GSG K A + + K
Sbjct: 134 LQPYLKLR-------QALLELRPAKNV-LID--GVLGSG---KTWVALDVCLSYKVQCKM 180
Query: 222 INPIRRGW--QGFKDGIRFTLSML----------------SPSNIKQKINEMQQMSIPQL 263
I W + L ML SNIK +I+ +Q
Sbjct: 181 DFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ 232
Query: 264 VVGFFKLFFYAFYYSNYSVYLVL 286
+ + Y N LVL
Sbjct: 233 ---ELRRLLKSKPYEN--CLLVL 250
Score = 31.0 bits (69), Expect = 0.47
Identities = 52/364 (14%), Positives = 101/364 (27%), Gaps = 118/364 (32%)
Query: 7 VQDEPIKHELYAKQLSFIPETADFLIGC-ILFFFFFSSREDI--EFMLACCETNHDGKID 63
VQD P K L +++ I + D + G LF+ S +E++ +F+ E I+
Sbjct: 38 VQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV----EEVLR--IN 90
Query: 64 YVGFTDRFHEPAKEIGFNLAVL------LTNLSEHMP--NEPRLARFLE----------- 104
Y ++ + L N ++ N RL +L+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 105 ----------------TASSVLNY-------FHPF---LGRI----EILGGSKRIERVYF 134
L+Y F F L +L + ++++ +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLY 207
Query: 135 EIKESNIEQWEKPQ--------IKESKRAFFYS--------IVTEGGDKEKLEAFVNFCE 178
+I + + + I+ R S ++ + + AF C+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 179 -----------DAIFEMQHASGLMAVEEGGGAGSGKARKQAYNYLSVDG----EEEKNIN 223
D + + + + + YL E N
Sbjct: 268 ILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 224 P---------IRRG---WQGFKDGIRFTLSMLSPSNIKQKINEMQQMSIPQLVVGFFKLF 271
P IR G W +K N K+ + + S+ L ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKH-----------VNCD-KLTTIIESSLNVLEPAEYRKM 374
Query: 272 FYAF 275
F
Sbjct: 375 FDRL 378
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 30.9 bits (70), Expect = 0.14
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 38 FFFFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72
+ E + + N G++ Y F RF
Sbjct: 53 RVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 32.3 bits (74), Expect = 0.19
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTD 69
E++E ++ + N DG++D+ F +
Sbjct: 451 QMEELESIIEQVDNNKDGEVDFNEFVE 477
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 32.0 bits (73), Expect = 0.24
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTD 69
+ + M++ ++N+DG +D+ F
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEEFCK 484
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.6 bits (72), Expect = 0.31
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 45 EDIEFMLACCETNHDGKIDYVGFTD 69
E + +L+ + N+DG++D+ F
Sbjct: 452 ETWKSVLSEVDKNNDGEVDFDEFQQ 476
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 31.2 bits (71), Expect = 0.41
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 45 EDIEFMLACCETNHDGKIDYVGFTD 69
+ +L + N D ID+ F
Sbjct: 469 KTWNDVLGEADQNKDNMIDFDEFVS 493
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1;
structural genomics, phosphotransferase, PSI-2, protein
structure initiative; 1.45A {Escherichia coli O157}
Length = 168
Score = 29.4 bits (66), Expect = 0.88
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
G + +KQ + + VD ++ ++ I+ + G+ + + P + K++I +
Sbjct: 110 GNMHFSEGKKQISSKVYVDDQDLTDLRFIK------QRGVNVFIQDV-PGDQKEQIPDE 161
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment,
WW domain, triple-standed beta-sheet, alpha-helix,
nucleus, phosphorylation; NMR {Homo sapiens}
Length = 52
Score = 27.3 bits (60), Expect = 0.99
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 126 SKRIERVYFEIKESNIEQWEKPQIKE 151
S+R R Y+ + +N WE P + +
Sbjct: 20 SRRENRPYYFNRFTNQSLWEMPVLGQ 45
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N-
acetylgalactosamine-specific component...; manxb PTS;
1.56A {Thermoanaerobacter tengcongensis}
Length = 187
Score = 29.0 bits (65), Expect = 1.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
GG RK +S+ +E K + ++ K + L M+ P + K + +
Sbjct: 126 GGVAKTPQRKGISQSVSLSEDEVKTLLELKT-----KYNVDVYLQMI-PDSEKIHLTTV 178
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar
transport, complex (transferase/phosphocarrier,
cytoplasm, membrane; HET: NEP; NMR {Escherichia coli}
PDB: 2jzn_C 2jzo_D 2jzh_A
Length = 165
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
GG + + Q N +SVD ++ + + GI + + ++ K K+ ++
Sbjct: 108 GGMAFRQGKTQVNNAVSVDEKDIEAFKKLN------ARGIELEVRKV-STDPKLKMMDL 159
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 29.1 bits (65), Expect = 1.5
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
ED + + N G + + F
Sbjct: 165 KVEDPAALFKELDKNGTGSVTFDEF 189
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A
{Bacillus subtilis} SCOP: c.38.1.1
Length = 163
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
GG R+Q +SV ++ K + G++ L L PS+ + ++
Sbjct: 106 GGMRFENHRRQITKSVSVTEQDIKAFETLS------DKGVKLELRQL-PSDASEDFVQI 157
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB
component, phosphotransferase, sugar transport, STRU
genomics; HET: PGE; 1.65A {Streptococcus pyogenes
serotype M1}
Length = 163
Score = 28.6 bits (64), Expect = 1.6
Identities = 5/59 (8%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
G + ++S+ ++ I + + F P+ ++
Sbjct: 107 GNIHKTDDKVAITQFISLGETDKSAIRCLAH-----DHHVVFNTKTT-PAGNSASDVDI 159
>3u5c_C Guanine nucleotide-binding protein subunit beta-L protein (ASC1,
RACK1); translation, ribosome, ribosomal, ribosomal R
ribosomal protein, eukaryotic ribosome, RNA-protein C;
3.00A {Saccharomyces cerevisiae} PDB: 3izb_E 3o30_B
3o2z_B 3u5g_C 3jyv_E* 1s1h_E
Length = 254
Score = 29.1 bits (65), Expect = 1.6
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 117 LGRIEILGGSKRIERVY---FEIKESNIEQWEKPQIKESKRAFFYSI-----VTEGGDKE 168
LGR+ G IE ++ +KE I P +++ +I T G +
Sbjct: 41 LGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDE----VMNIKPVQKQTRAGQRT 96
Query: 169 KLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQAYNYLSVDGEEEKNINPIRRG 228
+ +A V G G G + K A + + ++ PIRRG
Sbjct: 97 RFKAVV------------VVGDSNGHVGLGIKTAKEVAGAIRAGIIIAK--LSVIPIRRG 142
Query: 229 WQGFKDGIRFTL 240
+ G G +L
Sbjct: 143 YWGTNLGQPHSL 154
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core,
flanking helices, right handed beta-alpha-B crossover,
transferase; 1.75A {Klebsiella pneumoniae} SCOP:
c.38.1.1
Length = 164
Score = 28.5 bits (64), Expect = 1.7
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
GG +KQ +S+D ++ + + K G++ L ++ S+ I +
Sbjct: 105 GGMAWRPGKKQLTKAVSLDPQDIQAFRELD------KLGVKLDLRVV-ASDPSVNILDK 156
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 27.8 bits (62), Expect = 3.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 43 SREDIEFMLACCETNHDGKIDY 64
S+ED E C+ ++ G +D
Sbjct: 147 SQEDCEATFRHCDLDNAGDLDV 168
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
2zkq_e 1s1h_E
Length = 274
Score = 27.9 bits (62), Expect = 3.4
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 26/132 (19%)
Query: 117 LGRIEILGGSKRIERVYFE---IKESNIEQWEKPQIKESKRAFFYSI-----VTEGGDKE 168
LGR+ G +IE +Y +KE I + P +K+ I T G +
Sbjct: 50 LGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDE----VMKITPVQKQTRAGQRT 105
Query: 169 KLEAFVNFCEDAIFEMQHASGLMAVEEGGGAGSGKARKQAYNYLSVDGEEEKNINPIRRG 228
+ +AFV G G G K A + + ++ P+RRG
Sbjct: 106 RFKAFV------------VVGDNNGHVGLGVKCAKEVATAIRGAIILAK--LSVVPVRRG 151
Query: 229 WQGFKDGIRFTL 240
+ G K G T+
Sbjct: 152 YWGNKIGQPHTV 163
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 26.7 bits (60), Expect = 5.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 45 EDIEFMLACCETNHDGKIDY 64
E + + + N DG I
Sbjct: 107 EKVAEQVMKADANGDGYITL 126
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Length = 206
Score = 26.9 bits (60), Expect = 6.0
Identities = 9/96 (9%), Positives = 20/96 (20%), Gaps = 22/96 (22%)
Query: 105 TASSVLNYFHPFLGRIEILGGSKRIERVYFEIKESNIEQWEKPQIKESKRAFFYSIVTEG 164
+ S + +F G K E +Y + + + G
Sbjct: 41 SISMISYHF-----------GGK--EGLYAAVLQEQFACF---------GQLDDIRGQAG 78
Query: 165 GDKEKLEAFVNFCEDAIFEMQHASGLMAVEEGGGAG 200
+ A++ + E
Sbjct: 79 DPLAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTP 114
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 27.3 bits (59), Expect = 6.0
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 3 WLTAVQDEPIKHELYAKQLSFIPETADFLI----GCILFFFFFSSREDIEFMLACCETNH 58
+ D+ K + F+P + C+ F F +I L C E
Sbjct: 327 FFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEK 386
Query: 59 DGKIDYVGFTDRFHEPAKE--IGFNLAVLLTNLSEHMPNEPRLARFLETASSVLN 111
K D F P E F LL L E + + +L L+
Sbjct: 387 RLKTP-----DLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALH 436
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 27.1 bits (61), Expect = 6.8
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 92 HMPNEPRLARFLETASSVLNYFHPFLGRIEILGGSKRIER 131
P E T S F +EI G +RI R
Sbjct: 326 TYPEEDGT-----TRS-----FDLLFRGLEITSGGQRIHR 355
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 27.1 bits (60), Expect = 7.0
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 43 SREDIEFMLACCETNHDGKIDY 64
+R+ E + + + + Y
Sbjct: 288 ARKKFEHQFSVVDVDDSKSLSY 309
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 27.1 bits (61), Expect = 7.4
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 178 EDAIFEMQHASGLMAVEEGGGAGSGKA---RKQAYNYLSVDGEEEKNINPIRR 227
EDA+ + AVEEG AG G + L ++G+E N ++
Sbjct: 395 EDAV----RNA-KAAVEEGIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKV 442
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 26.7 bits (59), Expect = 7.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 43 SREDIEFMLACCETNHDGKIDY 64
S ED E C+ + G++D
Sbjct: 143 SSEDCEETFRVCDIDESGQLDV 164
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 26.4 bits (59), Expect = 9.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 45 EDIEFMLACCETNHDGKIDY 64
++ M+ + N+DGKID+
Sbjct: 163 NRVKRMIRDVDKNNDGKIDF 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.419
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,516,558
Number of extensions: 270366
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 60
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)