RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13307
(286 letters)
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia)
[TaxId: 5888]}
Length = 146
Score = 31.4 bits (70), Expect = 0.062
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
+A L + + ++++ M+ + + DG I+Y F
Sbjct: 100 SAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEF 140
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 162
Score = 29.1 bits (64), Expect = 0.37
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
+ L + + EDIE ++ + N+DG+ID+ F
Sbjct: 114 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEF 154
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 109
Score = 27.9 bits (62), Expect = 0.55
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHE 73
+ + + L + + DGKI F HE
Sbjct: 78 TDAETKAFLKAADKDGDGKIGIDEFETLVHE 108
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 27.8 bits (62), Expect = 0.89
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 68 TDRFHEPAKEIGFNLAVLLTNLSEHMPNEPRLA-RFLETASSVLN 111
+ + KE+G L LL + E +P P R +E A +LN
Sbjct: 40 PEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLN 84
>d1nrza_ c.38.1.1 (A:) Sorbose permease subunit IIb , EIIb-sor
{Klebsiella pneumoniae [TaxId: 573]}
Length = 163
Score = 27.8 bits (62), Expect = 0.96
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSML---SPSNIKQKIN 253
GG +KQ +S+D ++ + + K G++ L ++ NI KIN
Sbjct: 105 GGMAWRPGKKQLTKAVSLDPQDIQAFRELD------KLGVKLDLRVVASDPSVNILDKIN 158
Query: 254 E 254
E
Sbjct: 159 E 159
>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId:
9823]}
Length = 78
Score = 26.7 bits (59), Expect = 1.0
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 36 LFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
F ++ + + N DG++ + F
Sbjct: 38 EFPSLLKGPRTLDDLFQELDKNGDGEVSFEEF 69
>gi|148225444|ref|NP_001084009.1|(23-166:170) myosin light chain,
phosphorylatable, fast skeletal muscle [Xenopus laevis]
gi|27371289|gb|AAH41503.1| Mylpf-prov protein [Xenopus
laevis] gi|32450381|gb|AAH53808.1| Mylpf-prov protein
[Xenopus laevis] gi|45361043|ref|NP_989158.1| myosin,
light polypeptide 2, regulatory, cardiac, slow [Xenopus
(Silurana) tropicalis] gi|38494267|gb|AAH61602.1| Fast
skeletal myosin light chain 2 [Xenopus tropicalis]
gi|68342098|gb|AAY90073.1| MLC2 [Xenopus tropicalis]
gi|89272443|emb|CAJ83266.1| fast skeletal myosin light
chain 2 [Xenopus tropicalis] E=1e-68 s/c=1.81 id=86%
cov=100%
Length = 144
Score = 27.6 bits (60), Expect = 1.1
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ ++I+ M + G +DY
Sbjct: 111 TPDEIKNMWTAFPPDVAGNVDYKNI 135
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 156
Score = 27.6 bits (60), Expect = 1.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTD 69
+ L + + +DIE ++ + N+DG+IDY F +
Sbjct: 109 DLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 151
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 27.0 bits (59), Expect = 1.3
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 34 CILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
F S ++ ++ + + DG + F
Sbjct: 45 KNFFTKSKLSIPELSYIWELSDADCDGALTLPEF 78
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 27.4 bits (59), Expect = 1.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 45 EDIEFMLACCETNHDGKIDYVGF 67
+++ +L E + +G+IDY F
Sbjct: 117 AEVDELLKGVEVDSNGEIDYKKF 139
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 141
Score = 27.2 bits (59), Expect = 1.5
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ E+++ M+ + + DG++ F
Sbjct: 113 TDEELQEMIDEADRDGDGEVSEQEF 137
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 26.5 bits (58), Expect = 1.6
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ + + + +HDG +D F
Sbjct: 41 PVDILGRVWELSDIDHDGMLDRDEF 65
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.1 bits (57), Expect = 1.8
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 34 CILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72
+F + + + C+T GK+ F FH
Sbjct: 33 REIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFH 71
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis
[TaxId: 1423]}
Length = 112
Score = 26.7 bits (59), Expect = 1.8
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 149 IKESKRAFFYSIVTEGGDKEKLEAFVNFCED--AIFEMQHASGL 190
+ + F+ ++ +G KE+ EA + C++ Q A G
Sbjct: 21 VDMDRYPFYALLIDKGLSKEEGEAVMRICDELSEELATQKAQGF 64
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 27.3 bits (59), Expect = 2.2
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTD 69
+R+ E + + + + Y F
Sbjct: 288 ARKKFEHQFSVVDVDDSKSLSYQEFVM 314
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa
(Obelia longissima), obelin [TaxId: 32570]}
Length = 189
Score = 26.9 bits (58), Expect = 2.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHE 73
S+ED E C+ ++ G +D T +
Sbjct: 141 SQEDCEATFRHCDLDNAGDLDVDEMTRQHLG 171
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis
semifasciata) [TaxId: 30493]}
Length = 109
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ + + +LA +++HDGKI F
Sbjct: 78 NDTETKALLAAGDSDHDGKIGADEF 102
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId:
9913]}
Length = 61
Score = 25.0 bits (54), Expect = 2.7
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTD 69
+ +++ +L E + +G+IDY F +
Sbjct: 35 TDAEVDELLKGVEVDSNGEIDYKKFIE 61
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 77
Score = 25.2 bits (55), Expect = 3.1
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
T L + E+++ M+A + N D +ID F
Sbjct: 27 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEF 67
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
(Branchiostoma lanceolatum) [TaxId: 7740]}
Length = 68
Score = 24.8 bits (54), Expect = 3.4
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ ++E + + + +G ID F
Sbjct: 37 TDAEVEEAMKEADEDGNGVIDIPEF 61
>d1blea_ c.38.1.1 (A:) Fructose permease, subunit IIb {Bacillus
subtilis [TaxId: 1423]}
Length = 161
Score = 26.3 bits (58), Expect = 3.6
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 197 GGAGSGKARKQAYNYLSVDGEEEKNINPIRRGWQGFKDGIRFTLSMLSPSNIKQKINEM 255
GG R+Q +SV ++ K + G++ L L PS+ + ++
Sbjct: 105 GGMRFENHRRQITKSVSVTEQDIKAFETLS------DKGVKLELRQL-PSDASEDFVQI 156
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus
norvegicus), s100a1 [TaxId: 10116]}
Length = 93
Score = 25.3 bits (55), Expect = 4.2
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ ++ ++ + N DG++D+ F
Sbjct: 50 DADAVDKIMKELDENGDGEVDFQEF 74
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 25.0 bits (54), Expect = 4.2
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 40 FFSSREDIEFMLACCETNHDGKIDYVGFTDRFH 72
++ + + + DG + F FH
Sbjct: 38 SKLPILELSHIWELSDFDKDGALTLDEFCAAFH 70
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein
{Jellyfish (Aequorea aequorea), aequorin [TaxId:
168712]}
Length = 187
Score = 26.1 bits (56), Expect = 4.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHE 73
S ED E C+ + G++D T +
Sbjct: 139 SSEDCEETFRVCDIDESGQLDVDEMTRQHLG 169
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 26.1 bits (56), Expect = 4.4
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 45 EDIEFMLACCETNHDGKIDYVGFTDRFHE 73
+ +TN +G++ +
Sbjct: 136 AEAAEAFNQVDTNGNGELSLDELLTAVRD 164
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens),
s100a13 [TaxId: 9606]}
Length = 98
Score = 25.2 bits (55), Expect = 4.7
Identities = 2/32 (6%), Positives = 10/32 (31%)
Query: 36 LFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
++ + + N D ++ + +
Sbjct: 45 QLPHLLKDVGSLDEKMKSLDVNQDSELKFNEY 76
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed
(Chenopodium album) [TaxId: 3559]}
Length = 81
Score = 24.5 bits (53), Expect = 5.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 32 IGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTD 69
+G L + +++ M+A +T+ DG I + FTD
Sbjct: 28 LGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTD 65
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),
cardiac isoform [TaxId: 9031]}
Length = 81
Score = 24.5 bits (53), Expect = 5.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTD 69
+ L + + +DIE ++ + N+DG+IDY F +
Sbjct: 33 DLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 24.5 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
+ L + EDIE ++ + N+DG+ID+ F
Sbjct: 27 DIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEF 67
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 24.3 bits (52), Expect = 6.4
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTDRF 71
+ + + E + + N G++ Y F RF
Sbjct: 38 SREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF 82
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 67
Score = 24.1 bits (52), Expect = 6.4
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 27 TADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
+ D L F + ++EDI + + +G+++ F
Sbjct: 19 SLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEF 59
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId:
10117]}
Length = 109
Score = 24.6 bits (53), Expect = 8.2
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGFTDRFHE 73
S ++ + ++A + + DGKI F+ E
Sbjct: 78 SAKETKTLMAAGDKDGDGKIGVEEFSTLVAE 108
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
s100a4 [TaxId: 9606]}
Length = 93
Score = 24.4 bits (53), Expect = 8.4
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 37 FFFFFSSREDIEFMLACCETNHDGKIDYVGF 67
F + + +++ ++N D ++D+ +
Sbjct: 44 FLGKRTDEAAFQKLMSNLDSNRDNEVDFQEY 74
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 25.6 bits (55), Expect = 8.7
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
Query: 10 EPIKHELYAKQLSFIPETADFLIGCILFFFFFSSREDIEFMLACCETNHDGKIDYVGFTD 69
I S +P + ++ ++ F + + E
Sbjct: 310 NEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIG 369
Query: 70 RFHEPAKEIGFNLAV-LLTNLSEHM-PNEPRLARFLETASSVLNYFHPFLGR 119
+ + I N LL + N+ ++ + ++ Y +PF+G
Sbjct: 370 QAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGH 421
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
8010]}
Length = 107
Score = 24.1 bits (52), Expect = 9.8
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ + + LA + + DG I F
Sbjct: 77 TDAETKAFLADGDKDGDGMIGVDEF 101
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Length = 65
Score = 23.4 bits (50), Expect = 9.8
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 43 SREDIEFMLACCETNHDGKIDYVGF 67
+ E+++ M+ + + DG+++Y F
Sbjct: 37 TDEEVDEMIREADIDGDGQVNYEEF 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.419
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,119,250
Number of extensions: 53591
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 69
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)