RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13308
(166 letters)
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione
S-transferase; ankyrin binding, carrier crystallization,
ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1
c.47.1.5
Length = 254
Score = 39.4 bits (92), Expect = 2e-04
Identities = 22/119 (18%), Positives = 32/119 (26%), Gaps = 29/119 (24%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFF 78
V+ + K + + LK E RL +
Sbjct: 103 RYGVSRIAYSKDFETLKVDFLSKLPEMLKMFED------------------RLCHKTYLN 144
Query: 79 KDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQN-----YFKKDS 132
D T D +L+ + VL + A+P LV RIE Y K
Sbjct: 145 GDHVTHPDFMLYDALDVVLYM------DPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSK 197
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal
fibrinogen gamma...; gamma chain integrin fragment; HET:
GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1
c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A*
1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A*
3cru_A* 3d0z_A*
Length = 234
Score = 38.3 bits (89), Expect = 4e-04
Identities = 22/119 (18%), Positives = 32/119 (26%), Gaps = 29/119 (24%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFF 78
V+ + K + + LK E RL +
Sbjct: 102 RYGVSRIAYSKDFETLKVDFLSKLPEMLKMFED------------------RLCHKTYLN 143
Query: 79 KDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE-----QNYFKKDS 132
D T D +L+ + VL + A+P LV RIE Y K
Sbjct: 144 GDHVTHPDFMLYDALDVVLYM------DPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSK 196
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal
protein; 2.70A {Escherichia coli} SCOP: a.45.1.1
c.47.1.5
Length = 280
Score = 38.0 bits (88), Expect = 6e-04
Identities = 22/119 (18%), Positives = 32/119 (26%), Gaps = 29/119 (24%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFF 78
V+ + K + + LK E RL +
Sbjct: 102 RYGVSRIAYSKDFETLKVDFLSKLPEMLKMFED------------------RLCHKTYLN 143
Query: 79 KDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE-----QNYFKKDS 132
D T D +L+ + VL + A+P LV RIE Y K
Sbjct: 144 GDHVTHPDFMLYDALDVVLYM------DPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSK 196
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET:
GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5
PDB: 2wrt_A 1fhe_A*
Length = 216
Score = 37.5 bits (87), Expect = 9e-04
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
E+ + KD+ + S+ L KN + + +D +++ + A+
Sbjct: 115 EQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRYL------EPHC 168
Query: 110 IRAYPNLVEHCTRIE-----QNYFKKDS 132
+ +PNL + +RIE + Y + +
Sbjct: 169 LDHFPNLQQFMSRIEALPSIKAYMESNR 196
>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis
sinensis}
Length = 218
Score = 36.7 bits (85), Expect = 0.001
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
E+ + + + S+ L N++ PT LD + + + + ++
Sbjct: 116 EQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYL------DPTS 169
Query: 110 IRAYPNLVEHCTRIE-----QNYFKKDS 132
+ A+PNL++ RIE + + + D
Sbjct: 170 VEAFPNLMQFIHRIEALPNIKAFMESDR 197
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia
xenovorans} PDB: 2gdr_A*
Length = 203
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
++ + V + ++ ++ +LE + D+ + D LF + +
Sbjct: 119 DEWKNAVRQSLNTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNID------- 171
Query: 110 IRAYPNLVEHCTRIEQ 125
+ +P+L R+
Sbjct: 172 LSPWPSLQAFQGRVGG 187
>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP:
a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A*
2aaw_A* 3fr6_A 3fr3_A*
Length = 211
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 24 PWPLNIYLTYKKKLTVQHRL-KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKP 82
+ + + L K + EK L + + + +F +
Sbjct: 109 KFNNTNLFKQNETTFLNEDLPKWSGYFEKLLKK----------NHTNNNNDKYYFVGNNL 158
Query: 83 TELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE-----QNYFKKD 131
T D +F + T + S+++ +P L H I +NY
Sbjct: 159 TYADLAVFNLYDDIETK------YPSSLKNFPLLKAHNEFISNLPNIKNYITNR 206
>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating,
A putative oxidoreduct; HET: GSH; 2.50A {Proteus
mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*
Length = 203
Score = 36.4 bits (85), Expect = 0.002
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
E L V + +++ L K D T DA LF L+ P A
Sbjct: 119 ESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLF-----TLSQWAP--HVALD 171
Query: 110 IRAYPNLVEHCTRIEQ 125
+ +L ++ RI Q
Sbjct: 172 LTDLSHLQDYLARIAQ 187
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene
family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A
3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A*
2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A*
2gst_A* ...
Length = 218
Score = 36.3 bits (84), Expect = 0.002
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
EK + + + + + S+ L K +F DK T +D + + + S
Sbjct: 121 EKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVF------EPSC 174
Query: 110 IRAYPNLVEHCTRIEQN-----YFKKD 131
+ A+PNL + +R E Y K
Sbjct: 175 LDAFPNLKDFISRFEGLEKISAYMKSS 201
>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier,
S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A*
14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A*
3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A*
17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...
Length = 210
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 18/92 (19%)
Query: 46 LKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNR 105
+K L L LS+ F D+ + D L +
Sbjct: 120 VKALPGQLKPFETL-------LSQNQGGKTFIVGDQISFADYNLLDLLLIHEVL------ 166
Query: 106 FASTIRAYPNLVEHCTRIE-----QNYFKKDS 132
+ A+P L + R+ + +
Sbjct: 167 APGCLDAFPLLSAYVGRLSARPKLKAFLASPE 198
>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus}
SCOP: a.45.1.1 c.47.1.5
Length = 206
Score = 35.9 bits (83), Expect = 0.002
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFA 107
+ D + K +++ L+KN+ F DK + +D L+ H+ + NR
Sbjct: 119 KPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMT------NRVP 172
Query: 108 STIRAYPNLVEHCTRIEQN 126
I +P + H RI+Q
Sbjct: 173 EYIEGFPEVKAHMERIQQT 191
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 36.0 bits (83), Expect = 0.003
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
EK Q +++ + S L K ++F +K T +D L + +
Sbjct: 124 EKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIF------DPKC 177
Query: 110 IRAYPNLVEHCTRIEQN-----YFKKDS 132
+ +PNL R E Y + D
Sbjct: 178 LDEFPNLKAFMCRFEALEKIAAYLQSDQ 205
>2cvd_A Glutathione-requiring prostaglandin D synthase;
glutathione-S-transferase, isomerase; HET: GSH HQL;
1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB:
1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A*
2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Length = 198
Score = 35.8 bits (83), Expect = 0.003
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 11/69 (15%)
Query: 67 LSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQN 126
L L + T D +L + +P LV +++
Sbjct: 130 LDTYLGGREWLIGMSVTWADFYWEICSTTLLVF------KPDLLDNHPRLVTLRKKVQAI 183
Query: 127 -----YFKK 130
+ K+
Sbjct: 184 PAVANWIKR 192
>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification
enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus
gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*
Length = 219
Score = 35.9 bits (83), Expect = 0.003
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
EK + + + LS L ++F DK T +D L + +
Sbjct: 120 EKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLDQQRMF------VPDC 173
Query: 110 IRAYPNLVEHCTRIEQN-----YFKKDS 132
NL + R E Y +
Sbjct: 174 PELQGNLSQFLQRFEALEKISAYMRSGR 201
>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A
{Necator americanus}
Length = 206
Score = 35.5 bits (82), Expect = 0.003
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 50 EKSLDQVY-KDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRF 106
EK ++ +K + + LEK+ + D T D L H + +F
Sbjct: 118 EKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLAEHTSGIAA------KF 171
Query: 107 ASTIRAYPNLVEHCTRIEQN-----YFKKDS 132
S +P + H ++ + +
Sbjct: 172 PSIYDGFPEIKAHAEKVRSIPALKKWIETRP 202
>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP:
a.45.1.1 c.47.1.5 PDB: 1a0f_A*
Length = 201
Score = 34.9 bits (81), Expect = 0.005
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
E+ V ++K Q ++E L+ ++ + T DA LF + L
Sbjct: 119 EEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLN------- 171
Query: 110 IRAYPNLVEHCTRIEQ 125
+ ++ R+ +
Sbjct: 172 LEGLEHIAAFMQRMAE 187
>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma
class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP:
a.45.1.1 c.47.1.5 PDB: 1gsq_A*
Length = 202
Score = 35.0 bits (81), Expect = 0.006
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPN 103
+ EKS ++ ++ L + FF + T D + + L
Sbjct: 114 AVQQNYEKSCKRLAPFLEGL---LVSNGGGDGFFVGNSMTLADLHCYVALEVPL------ 164
Query: 104 NRFASTIRAYPNLVEHCTRIEQN-----YFKK 130
++ P +V R+ + Y KK
Sbjct: 165 KHTPELLKDCPKIVALRKRVAECPKIAAYLKK 196
>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus}
SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*
Length = 208
Score = 34.3 bits (79), Expect = 0.008
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPN 103
+ +++ L +K L+ R N DK + D LF +
Sbjct: 112 EKDPYIKSILPGELAKFEKL---LATRGNGRNLILGDKISYADYALFEELDVHQIL---- 164
Query: 104 NRFASTIRAYPNLVEHCTRIEQN-----YFKKDS 132
+ +P L R++ Y +K
Sbjct: 165 --DPHCLDKFPLLKVFHQRMKDRPKLKEYCEKRD 196
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 34.3 bits (79), Expect = 0.009
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 67 LSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE 124
+++ L+K+ F D T +D L+ H +L + YP + EH +I
Sbjct: 136 ITKFLKKSPSGFLVGDSLTWVDLLVSEHNATML------TFVPEFLEGYPEVKEHMEKIR 189
Query: 125 QN-----YFKK 130
+ +
Sbjct: 190 AIPKLKKWIET 200
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 34.5 bits (79), Expect = 0.011
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFA 107
++ D + K Q + L++ + + D L+ + +L R
Sbjct: 147 RRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLH--AFPRRMR 204
Query: 108 STIRAYPNLVEHCTRIEQN-----YFKKD 131
+ + YP L+ R+ + Y D
Sbjct: 205 TLVHRYPRLMALHARVAELPELRGYLASD 233
>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A
{Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A
Length = 229
Score = 34.0 bits (78), Expect = 0.012
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 21/111 (18%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPN 103
+ +EK+ + + +K + +F ++ + D L I V
Sbjct: 120 QCAFVVEKATSRYFPAYEKVLKD-----HGQDFLVGNRLSWADIHLLEAILMVE------ 168
Query: 104 NRFASTIRAYPNLVEHCTRIEQN-----YFKKDS-----TEAKYFLWLTNL 144
+ + + +P L RI + S ++ KY + +
Sbjct: 169 EKKSDALSGFPLLQAFKKRISSIPTIKKFLAPGSKRKPISDDKYVETVRRV 219
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 34.1 bits (79), Expect = 0.012
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 48 WLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFA 107
+ +S D + + Q L+ +N+ + + DA L+ + +
Sbjct: 123 MIARSQDNARQKLRVLYQRADAHLKHHNWLANGQRSGADAYLYVTLRWA-------KKVG 175
Query: 108 STIRAYPNLVEHCTRIEQ 125
+ + L R+E
Sbjct: 176 VDLSSLDALSAFFERMEA 193
>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI,
protein structure initiative; 3.00A {Caenorhabditis
elegans}
Length = 208
Score = 33.9 bits (78), Expect = 0.014
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 44 KTLKWLEKSLDQVY-KDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTP 100
K+ + +EK + + + L+ LEK+N F T D ++ ++ +
Sbjct: 114 KSAEEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNLLTL---- 169
Query: 101 LPNNRFASTIRAYPNLVEHCTRIEQN-----YFKK 130
N + L ++ Y K
Sbjct: 170 --KNYGLFDESEFTKLAALREKVNSYPGIKEYIAK 202
>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET:
GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1
c.47.1.5
Length = 249
Score = 33.2 bits (76), Expect = 0.021
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 27/119 (22%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRLKTL-KWLEKSLDQVYKDVDKCCQSLSERLEKNN-F 76
+A K+K V + + +LEK L + ++ N+
Sbjct: 145 RLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEK---------------LEQTVKDNDGH 189
Query: 77 FFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQN-----YFKK 130
K T D G + + YP L + + +K
Sbjct: 190 LALGKLTWADVYFAGITDYMNYMVKR-----DLLEPYPALRGVVDAVNALEPIKAWIEK 243
>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm,
polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A
1gul_A*
Length = 222
Score = 33.2 bits (76), Expect = 0.022
Identities = 12/94 (12%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPN 103
+ + +K++ + + +K + +F ++ + D +L I A+
Sbjct: 120 EVVNMAQKAIIRYFPVFEKILRG-----HGQSFLVGNQLSLADVILLQTILALE------ 168
Query: 104 NRFASTIRAYPNLVEHCTRIE-----QNYFKKDS 132
+ + + A+P L E+ ++ + + + S
Sbjct: 169 EKIPNILSAFPFLQEYTVKLSNIPTIKRFLEPGS 202
>4g9h_A Glutathione S-transferase; GST, enzyme function initiative,
structural genomics; HET: GSH; 2.10A {Yersinia pestis}
Length = 211
Score = 33.3 bits (77), Expect = 0.022
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
++ V + +DK + L ++++ K + DA LF N
Sbjct: 122 DEYKTIVRERLDKQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSR-------WANALNLQ 174
Query: 110 IRAYPNLVEHCTRIEQ 125
I+ +L ++ R+ +
Sbjct: 175 IKERSHLDQYMARVAE 190
>1f2e_A Glutathione S-transferase; GST complexed with glutathione,
thioredoxin superfamily fold transferase; HET: GSH;
2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1
c.47.1.5
Length = 201
Score = 32.9 bits (76), Expect = 0.023
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 54 DQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAY 113
+ V +L + L + + + + D L+ V+ + AY
Sbjct: 123 AAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYLY-----VMLGWPA--YVGIDMAAY 175
Query: 114 PNLVEHCTRIEQ 125
P L + +I Q
Sbjct: 176 PALGAYAGKIAQ 187
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione
transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis
elegans}
Length = 207
Score = 33.1 bits (76), Expect = 0.023
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 67 LSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE 124
L L+ + F D T +D + H ++ +P L H +I+
Sbjct: 138 LVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKG-------GDFSKFPELKAHAEKIQ 190
Query: 125 QN-----YFKK 130
+ +
Sbjct: 191 AIPQIKKWIET 201
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 33.3 bits (76), Expect = 0.025
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 21/107 (19%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPN 103
K EK ++ + +K +S ++ +K + D L +Y V
Sbjct: 119 KLALIKEKIKNRYFPAFEKVLKS-----HGQDYLVGNKLSRADIHLVELLYYV------E 167
Query: 104 NRFASTIRAYPNLVEHCTRIE-----QNYFKKDS-----TEAKYFLW 140
+S I ++P L TRI + + + S + K
Sbjct: 168 ELDSSLISSFPLLKALKTRISNLPTVKKFLQPGSPRKPPMDEKSLEE 214
>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A
{Haemonchus contortus}
Length = 204
Score = 32.3 bits (74), Expect = 0.040
Identities = 9/91 (9%), Positives = 27/91 (29%), Gaps = 22/91 (24%)
Query: 47 KWLEKSLDQVYKDVDKCCQSLSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNN 104
E + + + +++ L++N + D T D + +
Sbjct: 123 DVFEPARQKFFTI-------VTKILKENKTGYLVGDSLTFADLYVAEMGF--------TE 167
Query: 105 RFASTIRAYPNLVEHCTRIEQN-----YFKK 130
+ +P + H ++ N + +
Sbjct: 168 HYPKLYDGFPEVKAHAEKVRSNPKLKKWIET 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.041
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 31/137 (22%)
Query: 7 DPTTYREVTKVRHGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQ- 65
+P YR+ ++ +P + ++ L + W + V V+K +
Sbjct: 367 EPAEYRK----MFDRLSVFPPSAHIPTI-------LLSLI-WFDVIKSDVMVVVNKLHKY 414
Query: 66 SLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRF--ASTIRAYPNLVEHCTRI 123
SL +EK K+ + IY L L N S + Y
Sbjct: 415 SL---VEKQP---KESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFD--- 460
Query: 124 EQNYFKKDSTEAKYFLW 140
+ + +YF
Sbjct: 461 -SDDLIPPYLD-QYFYS 475
Score = 28.3 bits (62), Expect = 1.5
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 27/137 (19%)
Query: 26 PLNIY-LTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLE----KNNFFFKD 80
I+ L K + + L+ L+ L +D + ++ R+ + K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 81 KPTELDALLF-------GHIYA-------VLTTPLPNNRFASTIRAYPNLVEHCTRIEQN 126
KP E + LL A +LTT RF ++ +
Sbjct: 241 KPYE-NCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQVTDFLSAATTTHISLDHH 294
Query: 127 Y--FKKDSTEAKYFLWL 141
D ++ +L
Sbjct: 295 SMTLTPDEVKSLLLKYL 311
>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI
onchocerca volvulus, immune modulation; HET: GSH; 2.00A
{Onchocerca volvulus}
Length = 225
Score = 32.3 bits (74), Expect = 0.043
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 31/120 (25%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRLKTL-KWLEKSLDQVYKDVDKCCQSLSERLEKNN-- 75
+ PW T K +L + +L + + L+++
Sbjct: 123 FQKLIPWTHEKNTTKKAELFRNLSESDVMPFLGR---------------YEKFLKESTTG 167
Query: 76 FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQN-----YFKK 130
+K + D +F + + + YP L +I Q + KK
Sbjct: 168 HIVGNKVSVADLTVFNMLMTLD--------DEVKLEEYPQLASFVNKIGQMPGIKEWIKK 219
>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A
{Methylococcus capsulatus} PDB: 3uap_A*
Length = 227
Score = 32.3 bits (74), Expect = 0.047
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLE-KNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAS 108
E S + + + +RLE + D+ + DA L +
Sbjct: 121 EASKQIALGLLSRRLDYVEDRLEAGGPWLMGDRYSVADAYLSTVLGWC-------EYLKI 173
Query: 109 TIRAYPNLVEHCTRIEQ 125
+ +P ++ + R +
Sbjct: 174 DLSKWPRILAYLERNQA 190
>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit
cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP:
a.45.1.1 c.47.1.5 PDB: 1guk_A
Length = 221
Score = 31.3 bits (71), Expect = 0.097
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 24 PWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPT 83
+ + T K+K L ++ + + +K + F ++ +
Sbjct: 104 MIAVAPFKTPKEKEE-----SYDLILSRAKTRYFPVFEKILKD-----HGEAFLVGNQLS 153
Query: 84 ELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE-----QNYFKKDS 132
D L I V A + +P L TRI + + + S
Sbjct: 154 WADIQLLEAILMVE------ELSAPVLSDFPLLQAFKTRISNIPTIKKFLQPGS 201
>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET:
GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*
Length = 201
Score = 31.0 bits (71), Expect = 0.099
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 50 EKSLDQVYKDVDKCCQSLSERL-EKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAS 108
E++ V ++++ L L +KN ++ D T+ DA I + L
Sbjct: 118 EEARAGVIANINRRLGQLEAMLSDKNAYWLGDDFTQPDAYASVIIGWGVGQKLD------ 171
Query: 109 TIRAYPNLVEHCTRIEQ 125
+ AYP ++ R+
Sbjct: 172 -LSAYPKALKLRERVLA 187
>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C
family, structural genomics, PSI- protein structure
initiative; 2.10A {Corynebacterium glutamicum}
Length = 362
Score = 30.6 bits (69), Expect = 0.20
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIY---AVLTTPLPNNRF 106
++ +++ +D L +RL + D TE D L+ + AV R
Sbjct: 213 NEAYKRLWVALDW----LEDRLSTRRYLMGDHITEADIRLYPTLVRFDAVYHGHFKCGR- 267
Query: 107 ASTIRAYPNLVEHCTRIEQ 125
+ I PNL + + Q
Sbjct: 268 -NKITEMPNLWGYLRDLFQ 285
>3r3e_A Uncharacterized protein YQJG; thioredoxin domain, GST, glutathione
transferase, glutathion disulfide bond reductase,
transferase; HET: GSH; 2.21A {Escherichia coli}
Length = 328
Score = 30.5 bits (69), Expect = 0.20
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIY---AVLTTPLPNNRF 106
++++ +V++ + + L + L ++ + ++ TE D L+ + V T ++
Sbjct: 207 DEAVAKVFESLAR----LEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDK- 261
Query: 107 ASTIRAYPNLVEHCTRIEQ 125
I Y NL I Q
Sbjct: 262 -HRISDYLNLYGFLRDIYQ 279
>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold,
structura genomics, joint center for structural
genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP:
a.45.1.1 c.47.1.5
Length = 248
Score = 30.2 bits (68), Expect = 0.21
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 21/123 (17%)
Query: 19 HGAVAPWPLNIYLTYKKKLTVQHRL-KTLKWLEKSLDQVYKDVDKCCQSLSERLEKNNFF 77
+ T +K RL K ++ + + + F
Sbjct: 121 LDELTLNGGREMWTPEKWQEFVPRLQKWIRIFADTGA------------RNGLSAASGFM 168
Query: 78 F-KDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQN-----YFKKD 131
+K D + ++ + P + P + R+ K
Sbjct: 169 LGTEKIGVADIVTA-ILWTTVADRFPAIK-GIIEDTSPIIWGLSRRVVATAPLAALNSKS 226
Query: 132 STE 134
E
Sbjct: 227 FEE 229
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight,
protein tyrosine phosphatase, bacterial phosphatase; NMR
{Campylobacter jejuni}
Length = 156
Score = 29.8 bits (68), Expect = 0.28
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 54 DQVYKDVDKCCQSLSERLEKNN 75
D+ YK + C++L L K++
Sbjct: 132 DETYKILSLACKNLLVFLSKHH 153
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH;
1.59A {Fasciola hepatica} PDB: 2wdu_A*
Length = 211
Score = 29.6 bits (67), Expect = 0.34
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 67 LSERLEKNN--FFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRA-YPNLVEHCTRI 123
+SE LE + ++ T D LF + V+ + +P L E +
Sbjct: 139 VSESLESSGGKHVAGNRITLGDLFLFTTLTHVM------ETVPGFLEQKFPKLHEFHKSL 192
Query: 124 EQN 126
+
Sbjct: 193 PTS 195
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase,
hydrolase; 1.03A {Staphylococcus aureus}
Length = 158
Score = 28.6 bits (65), Expect = 0.58
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 54 DQVYKDVDKCCQSLSERLEKNN 75
+ VY V C +L + + K+
Sbjct: 133 EGVYDMVLSSCDNLIDYIVKDA 154
>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete
chrysosporium}
Length = 352
Score = 29.0 bits (65), Expect = 0.77
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLF 90
E ++ +++ +D+ L + LE ++ + TE D LF
Sbjct: 235 EAAVIPLFESLDR----LEKMLEGQDYLIGGQLTEADIRLF 271
>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid,
bacterial, biodegradation, fumaryl pyruvate; HET: TGG;
1.3A {Ralstonia SP} PDB: 2jl4_A*
Length = 214
Score = 28.4 bits (64), Expect = 0.86
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 47 KWLEKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRF 106
+ D L+ ++ + F D PT D L + + RF
Sbjct: 127 AINAWCGTWISAGFDAYEALLAVDPKRGRYSFGDTPTLADCYLVPQVESA-------RRF 179
Query: 107 ASTIRAYPNLVEHCTRIEQN-YFKK 130
+ YP + + F++
Sbjct: 180 QVDLTPYPLIRAVDAACGELDAFRR 204
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153,
structural genomics, PSI-2; 2.20A {Bacillus
thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A
Length = 146
Score = 28.2 bits (62), Expect = 0.94
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 78 FKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIE 124
++ + + Y+++ P P + STI+ + + +E
Sbjct: 56 IIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVE 102
>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.30A {Legionella pneumophila
subsp}
Length = 222
Score = 28.1 bits (63), Expect = 1.1
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 12 REVTKVRHGAVAPWPLNIYLTYKKKLTVQHRLKTLKWLEKSLDQVYKDVDKCCQSLSERL 71
+ + + + P L K+ + + L+W L + ++ L
Sbjct: 97 KSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAFEEK---LGALE 153
Query: 72 EKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFASTIRAYPNLVEHCTRIEQ 125
F + D L +Y +RF + +YP + E
Sbjct: 154 RDKPVCFGSEVGLADVCLIPQVYNA-------HRFHFDMASYPIINEINEYCLT 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.2
Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 67/177 (37%)
Query: 52 SLDQVYKDVDKCCQSL--SERLE---KN---NF---------------FFKDK-PTELD- 86
+ +QV V+K L +++E N N K K P+ LD
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 87 --------ALLFGHIYAVLTTPLPNNRFASTI--RAYPNLVEHCTRIEQNYFKKD----- 131
L F + + + +P F S + A + + + ++ KD
Sbjct: 405 SRIPFSERKLKFSNRFLPVASP-----FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 132 -STEAKYFL--WLTNLSSVVVRQ-------WTS----------DLEVGGS--ISQLT 166
T L ++S +V W + D GG+ + LT
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.6
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 44 KTLKWLEKSLDQVYKDVD 61
+ LK L+ SL ++Y D D
Sbjct: 20 QALKKLQASL-KLYAD-D 35
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural
genomics center for infect disease, parasitic protozoan,
dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A*
3ily_A 3ido_A*
Length = 161
Score = 27.5 bits (62), Expect = 1.7
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 54 DQVYKDVDKCCQSLSERLEKN 74
+V ++ C++L +LE+
Sbjct: 137 HRVIDILEDACENLIIKLEEG 157
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Length = 168
Score = 26.4 bits (59), Expect = 4.0
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 54 DQVYKDVDKCCQSLSERLEK 73
D VY+ +++ + +E+L +
Sbjct: 149 DSVYQLLEQASKRWAEKLGE 168
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 26.6 bits (59), Expect = 4.2
Identities = 9/76 (11%), Positives = 27/76 (35%)
Query: 50 EKSLDQVYKDVDKCCQSLSERLEKNNFFFKDKPTELDALLFGHIYAVLTTPLPNNRFAST 109
+ +++V+ + K ++L + + + + T D F H+ + P
Sbjct: 119 PEIVEEVHSTLVKGIKALQRVVRFSPYIAGNVFTLADCSGFAHLSVLDEELRPFYPNNHP 178
Query: 110 IRAYPNLVEHCTRIEQ 125
+ E+ ++
Sbjct: 179 LDLLNGWKEYFVFMKT 194
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia
coli}
Length = 150
Score = 25.9 bits (58), Expect = 4.5
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 54 DQVYKDVDKCCQSLSERLEK 73
D VY+ +++ + +E+L +
Sbjct: 131 DSVYQLLEQASKRWAEKLGE 150
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine
phosphatase, structural genomics; 1.90A {Thermus
thermophilus}
Length = 161
Score = 26.0 bits (58), Expect = 5.7
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 54 DQVYKDVDKCCQSLSERLEKNN 75
+VY ++ Q+ +R +
Sbjct: 133 REVYWTLEAALQAFLDRHGSPS 154
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 25.7 bits (57), Expect = 6.0
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 54 DQVYKDVDKCCQSLSERLEKN 74
Q ++++ + L+++L+K+
Sbjct: 162 KQTRDELEELLRQLAKQLKKD 182
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate
binding, hydrolase; NMR {Escherichia coli K12}
Length = 167
Score = 25.6 bits (57), Expect = 6.4
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 54 DQVYKDVDKCCQSLSERLEKN 74
VY +++ + ++ L
Sbjct: 145 AAVYTLLERSARQWAQALNAE 165
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 26.1 bits (56), Expect = 6.6
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 109 TIRAYPNLVEHCTRIEQNYFKK 130
T++ +PN +EH + ++ F+
Sbjct: 18 TLKNFPNAIEHTLQWARDEFEG 39
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 25.3 bits (55), Expect = 7.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 44 KTLKWLEKSLDQVYKDVDKCCQ 65
+ WL K + +Y D
Sbjct: 14 AVVNWLFKVIQPIYNDGRTTFH 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.421
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,494,191
Number of extensions: 129326
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 58
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)