BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13309
(1568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 213/462 (46%), Positives = 293/462 (63%), Gaps = 29/462 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEG 452
LY+LLA++I+GN NCA F + L+W+ S+L +S G
Sbjct: 520 NLLYELLASLIRGNRANCALF--STNLDWVVSKLDRLEASSG 559
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 213/462 (46%), Positives = 293/462 (63%), Gaps = 29/462 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEG 452
LY+LLA++I+GN NCA F+ L+W+ S+L +S G
Sbjct: 520 NLLYELLASLIRGNRANCALFSTN--LDWVVSKLDRLEASSG 559
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 279/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 279/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 279/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/437 (46%), Positives = 278/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVS-LY 118
ERYLH + + V+ASF T W++ P + SC VT L
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHILR 221
Query: 119 LHPG------LICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
L G I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 279/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR++ + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMMHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 278/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YEGG+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
A +I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AAGMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 278/437 (63%), Gaps = 27/437 (6%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVT--NVSL 117
ERYLH + + V+ASF T W++ P + SC VT +V
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNP---------------ICSCCEEGYVTGGHVLR 221
Query: 118 YLHPGL-----ICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMR 172
H + I S +V YE G+V + ARSLWRLE R W+G + W P+R
Sbjct: 222 LFHGHMDECLTISAADSDDQRRLVYYERGAVCTHARSLWRLEPLRISWSGSHLRWGQPLR 281
Query: 173 IRHLTTGRYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIK 232
IRH+TTGRYL+ E+ L +V +A T +++FC R K+ +D+E +G P IK
Sbjct: 282 IRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIK 340
Query: 233 YGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESR 292
YG+S VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+
Sbjct: 341 YGESLCFVQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQ 399
Query: 293 TARVIRKCSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDM 350
AR+I + L+ QFI GL++ R S A ++ + +++ L+DLI YF P E++
Sbjct: 400 AARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEEL 459
Query: 351 EHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIIS 410
+HEEKQ++LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I
Sbjct: 460 QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIV 519
Query: 411 GYLYQLLAAIIKGNHTN 427
LY+LLA++I+GN N
Sbjct: 520 NLLYELLASLIRGNRAN 536
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 196/295 (66%), Gaps = 4/295 (1%)
Query: 135 IVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMRIRHLTTGRYLSTNENNELYLVT 194
+V YEGG+V + ARSLWRLE R W+G + W P+RIRH+TTGRYL+ E+ L +V
Sbjct: 28 LVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRYLALTEDQGLVVVD 87
Query: 195 RDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIKYGDSTVLVQHSENGLWLTYKSY 254
+A T +++FC R K+ +D+E +G P IKYG+S VQH +GLWLTY +
Sbjct: 88 ACKAHTKATSFCFRVSKEKLDTA-PKRDVEGMGPPEIKYGESLCFVQHVASGLWLTYAAP 146
Query: 255 ETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESRTARVIRKCSSLFTQFISGLEAL 314
+ K LG V +K+A+LH+EG MDD L +R Q+EES+ AR+I + L+ QFI GL++
Sbjct: 147 DPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQAARMIHSTAGLYNQFIKGLDSF 205
Query: 315 QVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDMEHEEKQNRLRALRNRQDLFQEE 372
R S A ++ + +++ L+DLI YF P E+++HEEKQ++LR+LRNRQ LFQEE
Sbjct: 206 SGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEE 265
Query: 373 GILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIISGYLYQLLAAIIKGNHTN 427
G+L+L+L ID++NV T+ AG+E+ +SW I LY+LLA++I+GN N
Sbjct: 266 GMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIVNLLYELLASLIRGNRAN 320
>pdb|3IM5|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 (Residues
1-217)
pdb|3IM5|B Chain B, Crystal Structure Of Mouse Ryanodine Receptor 2 (Residues
1-217)
Length = 217
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL CLSTS SS DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 129 YLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSVSS 188
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + N V+A+F T WSV P
Sbjct: 189 ERYLHLSYGNSSWHVDAAFQQTLWSVAP 216
>pdb|3IM7|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 N-Terminal
Domain (1-217) Disease Mutant A77v
Length = 217
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL CLSTS SS DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 129 YLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSVSS 188
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + N V+A+F T WSV P
Sbjct: 189 ERYLHLSYGNSSWHVDAAFQQTLWSVAP 216
>pdb|3QR5|A Chain A, Structure Of The First Domain Of A Cardiac Ryanodine
Receptor Mutant With Exon 3 Deleted
pdb|3QR5|B Chain B, Structure Of The First Domain Of A Cardiac Ryanodine
Receptor Mutant With Exon 3 Deleted
Length = 185
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL CLSTS SS DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 97 YLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSVSS 156
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + N V+A+F T WSV P
Sbjct: 157 ERYLHLSYGNSSWHVDAAFQQTLWSVAP 184
>pdb|3IM6|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 Mutant
V186m
Length = 217
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL CLSTS SS DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVS+++
Sbjct: 129 YLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSMSS 188
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + N V+A+F T WSV P
Sbjct: 189 ERYLHLSYGNSSWHVDAAFQQTLWSVAP 216
>pdb|3ILA|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|B Chain B, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|C Chain C, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|D Chain D, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|E Chain E, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|F Chain F, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|G Chain G, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|H Chain H, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|I Chain I, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
Length = 197
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 109 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 168
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + + V+ASF T W++ P
Sbjct: 169 ERYLHLSTASGELQVDASFMQTLWNMNP 196
>pdb|3HSM|A Chain A, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
pdb|3HSM|B Chain B, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
Length = 213
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTSSS-NDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 120 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 179
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + + V+ASF T W++ P
Sbjct: 180 ERYLHLSTASGELQVDASFMQTLWNMNP 207
>pdb|4ERV|A Chain A, Crystal Structure Of Human Ryanodine Receptor 3
(2597-2800)
Length = 207
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 33/228 (14%)
Query: 752 DTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCL 811
+ F P P++T +LP +E I K AE+ H+ WA +K ++GW YG D+ K HP +
Sbjct: 2 NANFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLI 61
Query: 812 IQFERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSR 871
F+ + ++ P R + L T+LA+G+ + K
Sbjct: 62 RPFK---------------TLTEKEKEIYRWPAR-----ESLKTMLAVGWTVERTKEGEA 101
Query: 872 IKTVRLPNEPFM------QPNGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQ 925
+ R NE Q N Y PAPLDLS + L+ +++ +V+ +AEN HN+WAK++
Sbjct: 102 LVQQR-ENEKLRSVSQANQGNSYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWAKKKKL 160
Query: 926 QGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYG 973
+ + G P LVPY + A K +R+ A + + L V G
Sbjct: 161 ELESKG------GGSHPLLVPYDTLTAAEKFKDREKAQDLFKFLQVNG 202
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 54/90 (60%)
Query: 888 YKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPY 947
+ P P++ +L K+E +V + AE++H+ WA ++ Q GW YG++ D ++ P + P+
Sbjct: 5 FDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIRPF 64
Query: 948 GKVDDAIKKANRDTASETVRTLLVYGYNLD 977
+ + K+ R A E+++T+L G+ ++
Sbjct: 65 KTLTEKEKEIYRWPARESLKTMLAVGWTVE 94
>pdb|4ESU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
S2776m
Length = 210
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PV+T + +P +++ +K AE HE WA +KI+ WMYGE D+ K HP L +
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLRPY 64
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKT 874
+ E Y P +K + L ++A + I + +T
Sbjct: 65 K----------------TFSEKDKEIYRWP-IK---ESLKAMIAWEWTIEKAREGEEERT 104
Query: 875 VRLPNEPFMQP-------NGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+ Q GY P P DLS + L+ +++ + +QLAEN HN W +++ Q+
Sbjct: 105 EKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQEL 164
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
G P LVPY + K +R+ A E ++ L + GY
Sbjct: 165 EAKG------GGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGY 205
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 60/122 (49%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ + + K++ +++ AE TH WA ++IQ W YG N D ++ P L P
Sbjct: 4 NFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 64 YKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPRE 123
Query: 1007 NY 1008
Y
Sbjct: 124 GY 125
>pdb|4ETU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
R2939s
Length = 210
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PV+T + +P +++ +K AE HE WA +KI+ W YGE D+ K HP L +
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKT 874
+ E Y P +K + L ++A + I + +T
Sbjct: 65 K----------------TFSEKDKEIYRWP-IK---ESLKAMIAWEWTIEKAREGEEERT 104
Query: 875 VRLPNEPFMQP-------NGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+ Q GY P P DLS + L+ +++ + +QLAEN HN W +++ Q+
Sbjct: 105 EKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQEL 164
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
G P LVPY + K +R+ A E ++ L + GY
Sbjct: 165 EAKG------GGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGY 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ + + K++ +++ AE TH WA ++IQ W+YG N D ++ P L P
Sbjct: 4 NFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 64 YKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPRE 123
Query: 1007 NY 1008
Y
Sbjct: 124 GY 125
>pdb|4ERT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
(2734-2940)
Length = 210
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PV+T + +P +++ +K AE HE WA +KI+ W YGE D+ K HP L +
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKT 874
+ E Y P +K + L ++A + I + +T
Sbjct: 65 K----------------TFSEKDKEIYRWP-IK---ESLKAMIAWEWTIEKAREGEEERT 104
Query: 875 VRLPNEPFMQP-------NGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+ Q GY P P DLS + L+ +++ + +QLAEN HN W +++ Q+
Sbjct: 105 EKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQEL 164
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
G P LVPY + K +R+ A E ++ L + GY
Sbjct: 165 EAKG------GGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGY 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ + + K++ +++ AE TH WA ++IQ W+YG N D ++ P L P
Sbjct: 4 NFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 64 YKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPRE 123
Query: 1007 NY 1008
Y
Sbjct: 124 GY 125
>pdb|3RQR|A Chain A, Crystal Structure Of The Ryr Domain Of The Rabbit
Ryanodine Receptor
Length = 227
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PV+T + +P +++ +K AE HE WA +KI+ W YGE D+ K HP L +
Sbjct: 22 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 81
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKT 874
+ E Y P +K + L ++A + I + +T
Sbjct: 82 K----------------TFSEKDKEIYRWP-IK---ESLKAMIAWEWTIEKAREGEEERT 121
Query: 875 VRLPNEPFMQP-------NGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+ Q GY P P DLS + L+ +++ + +QLAEN HN W +++ Q+
Sbjct: 122 EKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQEL 181
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
G P LVPY + K +R+ A E ++ L + GY
Sbjct: 182 EAKG------GGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGY 222
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 61/121 (50%)
Query: 888 YKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPY 947
+ P P++ + + K++ +++ AE TH WA ++IQ W+YG N D ++ P L PY
Sbjct: 22 FDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPY 81
Query: 948 GKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEKN 1007
+ K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 82 KTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPREG 141
Query: 1008 Y 1008
Y
Sbjct: 142 Y 142
>pdb|4ETT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
E2764k
Length = 210
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PV+T + +P +++ +K AE H+ WA +KI+ W YGE D+ K HP L +
Sbjct: 5 FDPRPVETLNVIIPEKLDSFINKFAEYTHKKWAFDKIQNNWSYGENVDEELKTHPMLRPY 64
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKT 874
+ E Y P +K + L ++A + I + +T
Sbjct: 65 K----------------TFSEKDKEIYRWP-IK---ESLKAMIAWEWTIEKAREGEEERT 104
Query: 875 VRLPNEPFMQP-------NGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+ Q GY P P DLS + L+ +++ + +QLAEN HN W +++ Q+
Sbjct: 105 EKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQEL 164
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
G P LVPY + K +R+ A E ++ L + GY
Sbjct: 165 EAKG------GGTHPLLVPYDTLTAKEKARDREKAQELLKFLQMNGY 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 61/122 (50%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ + + K++ +++ AE TH WA ++IQ W+YG N D ++ P L P
Sbjct: 4 NFDPRPVETLNVIIPEKLDSFINKFAEYTHKKWAFDKIQNNWSYGENVDEELKTHPMLRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 64 YKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPRE 123
Query: 1007 NY 1008
Y
Sbjct: 124 GY 125
>pdb|4ETV|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
pdb|4ETV|B Chain B, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
Length = 209
Score = 81.3 bits (199), Expect = 4e-15, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 755 FVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQF 814
F P PVDTS IT+P +E +K AE+ H+ W+ +K+ GW+YGE D KI P +
Sbjct: 5 FNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSXDKLANGWIYGEIYSDSSKIQPLXKPY 64
Query: 815 ERRIWXXXXXXXXXXXXXXXETSILFYHPPRVKFHAKVLPTILAIGYHISM----DKPPS 870
+ E Y P +K + L T LA G+ I D
Sbjct: 65 K----------------LLSEKEKEIYRWP-IK---ESLKTXLAWGWRIERTREGDSXAL 104
Query: 871 RIKTVRLPNEPFMQ---PNGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQG 927
+T R+ + +GY P +D S + L+ + + AEN HN+WAK++ +
Sbjct: 105 YNRTRRISQTSQVSIDAAHGYSPRAIDXSNVTLSRDLHAXAEXXAENYHNIWAKKKKLEL 164
Query: 928 WTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGY 974
+ G P LVPY + A K +R+ A + + L + GY
Sbjct: 165 ESKG------GGNHPLLVPYDTLTAAEKAKDREKAQDIFKFLQISGY 205
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 888 YKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPY 947
+ P P+D S I + K+E +++ AE++H+ W+ +++ GW YG P PY
Sbjct: 5 FNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSXDKLANGWIYGEIYSDSSKIQPLXKPY 64
Query: 948 GKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEKN 1007
+ + K+ R E+++T L +G+ ++ AL RI S + A
Sbjct: 65 KLLSEKEKEIYRWPIKESLKTXLAWGWRIERTREGDSXALYNRTRRISQTSQVSIDAAHG 124
Query: 1008 YA 1009
Y+
Sbjct: 125 YS 126
>pdb|3NRT|A Chain A, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|B Chain B, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|C Chain C, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|D Chain D, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|E Chain E, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|F Chain F, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
Length = 103
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 47/66 (71%)
Query: 750 EDDTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHP 809
E+ ++P P D S++ LP + + +++AEN+HE+WA +I+ GW YGE+RDD+ K HP
Sbjct: 6 ENKLDYIPEPXDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHP 65
Query: 810 CLIQFE 815
CL+ ++
Sbjct: 66 CLVPYD 71
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 888 YKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPY 947
Y P P DLS + L + +L +++AEN H +WAK RI +GWTYG D + P LVPY
Sbjct: 11 YIPEPXDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVPY 70
Query: 948 GKVDDAIKKANRDTASETVRTLLVYGYNLD 977
++ + K+ +R+TA T++ + G+ ++
Sbjct: 71 DELPEEEKEYDRNTAXNTIKXVKKLGFRIE 100
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 22 EHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVATERYLHTTKE--------NDLSV 73
+ + E W+ + P K RS G+ V +GD ++L V + LH + N+++
Sbjct: 152 DEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVNS 211
Query: 74 VNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVSLYLHPGLICPDRSKYLF 133
VNA+ T W + + MK+ + + G +V + + D +
Sbjct: 212 VNAN---TSWKIVLF------MKWSDNKDDILKGG--DVVRLFHAEQEKFLTADEHRKKQ 260
Query: 134 HIVVYEGG----SVMSQARSLWRLELARTKWA-GGFINWYHPMRIRHLTTGRYLST 184
H+ + G + + +++LW +E+ + A GG W R +HL TG YL+
Sbjct: 261 HVFLRTTGRQSATSATSSKALWEVEVVQHDPARGGAGYWNSLFRFKHLATGHYLAA 316
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 12 DKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVATERYLHTTKE--- 68
+K + V L E + E W+ + P K RS G+ V +GD ++L V + LH +
Sbjct: 141 EKNAMRVTLDE-AGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLV 199
Query: 69 -----NDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVSLYLHPGL 123
N+++ VN + T W + + MK+ + + G +V +
Sbjct: 200 DNPGCNEVNSVNCN---TSWKIVLF------MKWSDNKDDILKGG--DVVRLFHAEQEKF 248
Query: 124 ICPDRSKYLFHIVVYEGG----SVMSQARSLWRLELAR-TKWAGGFINWYHPMRIRHLTT 178
+ D + H+ + G + + +++LW +E+ + GG W R +HL T
Sbjct: 249 LTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFRFKHLAT 308
Query: 179 GRYLST 184
G YL+
Sbjct: 309 GHYLAA 314
>pdb|2KG4|A Chain A, Three-Dimensional Structure Of Human Gadd45alpha In
Solution By Nmr
Length = 165
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 378 ILEAIDKINVITSQGFLVNLAGDESGQSWDIISGYLYQLLAAIIKGNHTNCAQFANTNRL 437
+ EA +NV L LA DE D+ + L+ A N N + +N RL
Sbjct: 40 VYEAAKLLNVDPDNVVLCLLAADEDDDR-DVALQIHFTLIQAFCCENDINILRVSNPGRL 98
Query: 438 N--WLFSRLGSQASSEGTGMLDVLHCVLIDSP 467
L A+SEG LHCVL+ +P
Sbjct: 99 AELLLLETDAGPAASEGAEQPPDLHCVLVTNP 130
>pdb|1XZZ|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 1 Inositol 1,4,5-trisphosphate Receptor
Length = 246
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 22 EHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVATERYLHTTKE--------NDLSV 73
+ + E W+ + P K RS G+ V +GD ++L V + LH + N+++
Sbjct: 167 DEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNS 226
Query: 74 VNASFHVTHWSV 85
VN + T W +
Sbjct: 227 VNCN---TSWKI 235
>pdb|3JRR|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
pdb|3JRR|B Chain B, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
Length = 226
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 27 EACWWTVHPASKQRSEGEKVRVGDDLILVSVATERYLHTT 66
E W + P K RS G+ V VGD +IL V + LH +
Sbjct: 160 EGSWLFIQPFWKLRSNGDNVVVGDKVILNPVNAGQPLHAS 199
>pdb|3AWP|A Chain A, Cytochrome P450sp Alpha (Cyp152b1) Mutant F288g
Length = 415
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 663 FTFNGSLVSGAFRDFNLDGMFFPVISCSSKLSCRFLFGGDHGRLKYIPPEEFSP 716
+ F ++V+ A +DF +GM FP + L+G +H + P+EF P
Sbjct: 285 YPFGPAVVARASQDFEWEGMAFP----EGRQVVLDLYGSNHDAATWADPQEFRP 334
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 380 EAIDKINVITSQGFLVNLAG------DESGQSWDIISGYLYQLLAAIIKGNHTNCAQFAN 433
E +K V+ + FL ++ G + ++W Y+Y A I GN TN +
Sbjct: 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446
Query: 434 TNRLN---WLFSRLGSQASSEGTGMLDVLHCVL-IDSPEALNMMRDEHIKV-IISLLEKH 488
N LN + + +S ++ H +L +D+ + + R++ K +I L+
Sbjct: 447 NNLLNVVDFFTKEIAPDLTSN-----NIPHIILRVDAIKYIYTFRNQLTKAQLIELMPIL 501
Query: 489 G----RDPKVLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQLDEHIKVIISLLE 544
D V+ ++ + + +R S N ++ +++ T++ +K +I+L+
Sbjct: 502 ATFLQTDEYVVYTYAAITIEKILTIRES-NTSPAFIFHKEDISNSTEI--LLKNLIALIL 558
Query: 545 KHGRDPKVL 553
KHG P+ L
Sbjct: 559 KHGSSPEKL 567
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 380 EAIDKINVITSQGFLVNLAG------DESGQSWDIISGYLYQLLAAIIKGNHTNCAQFAN 433
E +K V+ + FL ++ G + ++W Y+Y A I GN TN +
Sbjct: 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446
Query: 434 TNRLN---WLFSRLGSQASSEGTGMLDVLHCVL-IDSPEALNMMRDEHIKV-IISLLEKH 488
N LN + + +S ++ H +L +D+ + + R++ K +I L+
Sbjct: 447 NNLLNVVDFFTKEIAPDLTSN-----NIPHIILRVDAIKYIYTFRNQLTKAQLIELMPIL 501
Query: 489 G----RDPKVLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQLDEHIKVIISLLE 544
D V+ ++ + + +R S N ++ +++ T++ +K +I+L+
Sbjct: 502 ATFLQTDEYVVYTYAAITIEKILTIRES-NTSPAFIFHKEDISNSTEI--LLKNLIALIL 558
Query: 545 KHGRDPKVL 553
KHG P+ L
Sbjct: 559 KHGSSPEKL 567
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,792,752
Number of Sequences: 62578
Number of extensions: 1977303
Number of successful extensions: 4530
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4414
Number of HSP's gapped (non-prelim): 72
length of query: 1568
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1456
effective length of database: 7,964,601
effective search space: 11596459056
effective search space used: 11596459056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)