RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13309
(1568 letters)
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain. The RIH (RyR and IP3R Homology)
domain is an extracellular domain from two types of
calcium channels. This region is found in the ryanodine
receptor and the inositol-1,4,5- trisphosphate receptor.
This domain may form a binding site for IP3.
Length = 203
Score = 249 bits (638), Expect = 8e-76
Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 8/206 (3%)
Query: 331 EMVMCLEDLINYFAQPEEDMEHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITS 390
E++ LEDLI + AQPEE+ +HE KQN L+ LR RQ L +EEG+ ++LE + +
Sbjct: 1 EVLKLLEDLIKFCAQPEEEGQHELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYDEKA 60
Query: 391 QGFLVNLAGDESGQSWDIISGYLYQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASS 450
G GDE + I Y+ L +GN N A A L L S
Sbjct: 61 GGDFAEELGDEKDEKMKEIVRLCYRFLQYFCRGNRQNQALLAKHLDLMQLQ-------SG 113
Query: 451 EGTGMLDVLHCVLIDSPEALNMMRDEHIKVIISLLEKHGRDPKVLDVLCSLCVGNGVAVR 510
G LD L+ VL ++PE LN + + I+ +SLLEKHGRDPK LDVL +LCV NG AVR
Sbjct: 114 PGILELDTLYAVLHNNPELLNEIIEAVIEHFVSLLEKHGRDPKYLDVLKTLCVANGKAVR 173
Query: 511 SSQNNIC-DYLLPGKNLLLQTQLDEH 535
+Q+ IC + L PG++LL+QT L
Sbjct: 174 GTQDLICKEVLNPGEDLLIQTNLRAS 199
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor
(RyR). This SPRY domain is the first of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this first SPRY
domain of the RyRs.
Length = 151
Score = 194 bits (495), Expect = 2e-57
Identities = 71/104 (68%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 597 YVPYPGGGEKWGGNGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDL 656
YVPYPGGGE WGGNGVGDDLYS+GFDG HLWTGGR V GT + +KKGDV+G LDL
Sbjct: 49 YVPYPGGGEGWGGNGVGDDLYSYGFDGLHLWTGGRSRRVTSGT-QHLLKKGDVVGCCLDL 107
Query: 657 SIPIITFTFNGSLVSGAFRDFNLDGMFFPVISCSSKLSCRFLFG 700
S+P I+F NG V G F +FNLDGMFFPV+S S+ +SCRFL G
Sbjct: 108 SVPSISFRVNGRPVQGMFENFNLDGMFFPVMSFSAGVSCRFLLG 151
Score = 37.3 bits (87), Expect = 0.017
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 17/61 (27%)
Query: 1014 KWYFEFEILTAGPM-------RVGWARVD---CAPGAQ-------LGSDENSWAFDGFNR 1056
KWYFE E+ RVGWA PG +G D S+ FDG +
Sbjct: 19 KWYFEVEVDHVEQFTHQPAHLRVGWANTSGYVPYPGGGEGWGGNGVGDDLYSYGFDGLHL 78
Query: 1057 H 1057
Sbjct: 79 W 79
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor
(RyR). This SPRY domain (SPRY2) is the second of three
structural repeats in all three isoforms of the ryanodine
receptor (RyR), which are the major Ca2+ release channels
in the membranes of sarcoplasmic reticulum (SR). There
are three RyR genes in mammals; the skeletal RyR1, the
cardiac RyR2 and the brain RyR3. The three SPRY domains
are located in the N-terminal part of the cytoplasmic
region of the RyRs, The SPRY2 domain has been shown to
bind to the dihydropryidine receptor (DHPR) II-III loop
and the ASI region of RyR1.
Length = 133
Score = 185 bits (471), Expect = 2e-54
Identities = 72/134 (53%), Positives = 89/134 (66%), Gaps = 17/134 (12%)
Query: 1000 RTYRAEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNR--- 1056
RT+RAEK YAV+SGKWYFEFE+LT+G MRVGWAR P +LGSD+ S+AFDGF
Sbjct: 1 RTFRAEKTYAVTSGKWYFEFEVLTSGYMRVGWARPGFRPDLELGSDDLSYAFDGFLARKW 60
Query: 1057 HIKINLFQQ------------DKKDYSISGFSLNGELLMDALGGETTFADVQ-GEGFVPA 1103
H F + D D +IS F+LNGELL+D+ G E F D++ GEGFVPA
Sbjct: 61 HQGSESFGKQWQPGDVVGCMLDLVDRTIS-FTLNGELLIDSSGSEVAFKDIEIGEGFVPA 119
Query: 1104 CTLGVGQRAKLTFG 1117
C+LGVGQ+ +L G
Sbjct: 120 CSLGVGQKGRLNLG 133
Score = 47.3 bits (113), Expect = 4e-06
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Query: 609 GNGVGDDLYSFGFDG--AHLWTGGRRTEVIPGTLEPYIK---KGDVIGVALDLSIPIITF 663
+G D S+ FDG A W G E + K GDV+G LDL I+F
Sbjct: 40 DLELGSDDLSYAFDGFLARKWHQGS---------ESFGKQWQPGDVVGCMLDLVDRTISF 90
Query: 664 TFNGSLV---SG---AFRDFNLDGMFFPVISCSSKLSCRFLFG 700
T NG L+ SG AF+D + F P S R G
Sbjct: 91 TLNGELLIDSSGSEVAFKDIEIGEGFVPACSLGVGQKGRLNLG 133
>gnl|CDD|217239 pfam02815, MIR, MIR domain. The MIR (protein mannosyltransferase,
IP3R and RyR) domain is a domain that may have a ligand
transferase function.
Length = 189
Score = 144 bits (366), Expect = 2e-39
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 132 LFHIVVYEGGSVMSQARSLWRLELA-RTKWAGGFINWYHPMRIRHLTTGRYLSTNENNEL 190
YE G+V + +RSLWR+E R W GG W R+RHLTTGRYL ++E
Sbjct: 31 FLRTTSYESGAVATSSRSLWRIEPVQRDPWRGGLGKWGSVFRLRHLTTGRYLHSHEEK-P 89
Query: 191 YLVTRDEATTASSTFCLRQE---KDDQKIVLEDKDLEVIGAPIIKYGDSTVLVQHSENGL 247
+ +++ S + R DD + E K +G IK GDS V ++H G
Sbjct: 90 PVSEKEDWQKEVSAYGYRGFPGDNDDWVEIFEKKSTTGMGQDRIKPGDSKVRLRHVCTGC 149
Query: 248 WLTYKSYETKKKGLGKVEEKQAVLHEEGKM-----DDGLDFS 284
WL + + K G +E++ +EG M +
Sbjct: 150 WLFSHNVKLPK--WGFEQEEKTCAKKEGTMWYIEDKENFALP 189
>gnl|CDD|202095 pfam02026, RyR, RyR domain. This domain is called RyR for
Ryanodine receptor. The domain is found in four copies
in the ryanodine receptor. The function of this domain
is unknown.
Length = 95
Score = 139 bits (352), Expect = 1e-38
Identities = 43/95 (45%), Positives = 63/95 (66%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
G+ PAP+D S + L +EELV++LAEN H +WAK++I+QGWTYG D P LVP
Sbjct: 1 GFIPAPIDTSNVTLPEDLEELVEKLAENYHEVWAKDKIEQGWTYGELRDDGGKTHPCLVP 60
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTG 981
Y + + K+ +R+ A ET++TLL GY+++ P
Sbjct: 61 YDTLTEKEKEYDREPARETLKTLLALGYSIERPDE 95
Score = 107 bits (269), Expect = 2e-27
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 32/121 (26%)
Query: 754 AFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQ 813
F+P P+DTS +TLP +E + +KLAEN HE+WA +KIE GW YGE RDD K HPCL+
Sbjct: 1 GFIPAPIDTSNVTLPEDLEELVEKLAENYHEVWAKDKIEQGWTYGELRDDGGKTHPCLVP 60
Query: 814 F------ERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISMDK 867
+ E+ R +R ET L T+LA+GY I
Sbjct: 61 YDTLTEKEKEYDREPAR----------ET----------------LKTLLALGYSIERPD 94
Query: 868 P 868
Sbjct: 95 E 95
>gnl|CDD|219984 pfam08709, Ins145_P3_rec, Inositol 1,4,5-trisphosphate/ryanodine
receptor. This domain corresponds to the ligand binding
region on inositol 1,4,5-trisphosphate receptor, and the
N terminal region of the ryanodine receptor. Both
receptors are involved in Ca2+ release. They can couple
to the activation of neurotransmitter-gated receptors
and voltage-gated Ca2+ channels on the plasma membrane,
thus allowing the endoplasmic reticulum discriminate
between different types of neuronal activity.
Length = 210
Score = 134 bits (338), Expect = 2e-35
Identities = 45/95 (47%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YLA L + DK + VGL E GE CW+T+HP K RSEG+ V VGD +ILV V+
Sbjct: 114 YLAVLKRLPALLDKNAMRVGLDEAGNGEGCWFTIHPRYKLRSEGDNVVVGDKVILVPVSA 173
Query: 60 ERYLHTTKENDL------SVVNASFHVTHWSVQPY 88
ERYLH +DL VNASF T W V +
Sbjct: 174 ERYLHVASNHDLRDNPGCKEVNASFSQTSWKVHLF 208
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 85.9 bits (213), Expect = 1e-19
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 604 GEKWGGNGVGDDLYSFGFDG--AHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPII 661
+K G +GDD S+G+DG + G + ++GDVIG LDL I
Sbjct: 27 VKKPGFRLLGDDEGSWGYDGSGGSKYHNGE----SEPYGLKF-QEGDVIGCFLDLEEGEI 81
Query: 662 TFTFNGSLVSG-AFRDFNLDGMFFPVISC-SSKLSCRFLFGGDH 703
+FT NG + G FR+ G +P +S S+ + +F FG
Sbjct: 82 SFTKNGKDLGGYTFRNVEFGGPLYPAVSLGSTGEAVQFNFGQLK 125
Score = 73.6 bits (181), Expect = 3e-15
Identities = 44/129 (34%), Positives = 55/129 (42%), Gaps = 28/129 (21%)
Query: 1012 SGKWYFEFEILTAGP--MRVGWARVDCAPG--AQLGSDENSWAFDGFNRHIKINL----- 1062
SGK YFE E+ T G +RVGWA LG DE SW +DG N
Sbjct: 1 SGKHYFEVEVDTGGGGHVRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGSKYHNGESEPY 60
Query: 1063 ---FQQDKK-----DY---SISGFSLNGELLMDALGGETTFADVQ-GEGFVPACTLG-VG 1109
FQ+ D IS F+ NG+ L TF +V+ G PA +LG G
Sbjct: 61 GLKFQEGDVIGCFLDLEEGEIS-FTKNGKDLG-----GYTFRNVEFGGPLYPAVSLGSTG 114
Query: 1110 QRAKLTFGQ 1118
+ + FGQ
Sbjct: 115 EAVQFNFGQ 123
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor. Domain
of unknown function. Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 80.0 bits (198), Expect = 1e-17
Identities = 41/128 (32%), Positives = 50/128 (39%), Gaps = 26/128 (20%)
Query: 1012 SGKWYFEFEILTAGPMRVGWARVDCAPG--AQLGSDENSWAFDGFNRHIKIN-------- 1061
SG+ YFE EI G RVG A G A LG D+ SW +DG N
Sbjct: 1 SGRHYFEVEIGDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGL 60
Query: 1062 -LFQQDKK-----DY---SISGFSLNGELLMDALGGETTFADVQ-GEGFVPACTLGVGQR 1111
L + D +IS F NG+ L F DV+ PA +LG G
Sbjct: 61 PLQEPGDVIGCFLDLEAGTIS-FYKNGKYLH-----GLAFFDVKFSGPLYPAFSLGSGNS 114
Query: 1112 AKLTFGQD 1119
+L FG
Sbjct: 115 VRLNFGPL 122
Score = 78.5 bits (194), Expect = 5e-17
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 596 SYVPYPGGGEKWGGNGVGDDLYSFGFDG--AHLWTGGRRTEVIPGTLEPYIKKGDVIGVA 653
+ P G +G+D S+G+DG + E P + GDVIG
Sbjct: 21 ATKSVPRGYF----ALLGEDKGSWGYDGDGGKKYHNSTGPE----YGLPLQEPGDVIGCF 72
Query: 654 LDLSIPIITFTFNGSLVSG-AFRDFNLDGMFFPVISCSSKLSCRFLFGGD 702
LDL I+F NG + G AF D G +P S S S R FG
Sbjct: 73 LDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAFSLGSGNSVRLNFGPL 122
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 67.8 bits (166), Expect = 3e-13
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 1013 GKWYFEFEILTA--GPMRVGWARVDCAPGAQ--LGSDENSWAFDGFNR---HIKINLFQQ 1065
GKWY+E + + G ++VGWA + + +G DE SW FDG H +
Sbjct: 1 GKWYYEVRVDSGNGGLIQVGWATKSFSLDGERGVGDDEGSWGFDGSRLRKGHGGSSEPGG 60
Query: 1066 DKK----------DY---SISGFSLNGELLMDALGGETTFADVQGEGFVPACTLGVGQRA 1112
D ++S FSLNG L A +G PA +LG GQ
Sbjct: 61 RPWKSGDVVGCLLDLDAGTLS-FSLNGVDLGVA----FENLFRKGGPLYPAVSLGSGQGV 115
Query: 1113 KL 1114
+
Sbjct: 116 TI 117
Score = 65.5 bits (160), Expect = 1e-12
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 608 GGNGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTFNG 667
G GVGDD S+GFDG+ L G + G K GDV+G LDL ++F+ NG
Sbjct: 30 GERGVGDDEGSWGFDGSRLRKGHGGSSEPGGRP---WKSGDVVGCLLDLDAGTLSFSLNG 86
Query: 668 SLVSGAFRDFNLDGM-FFPVISCSSKLSCRFL 698
+ AF + G +P +S S
Sbjct: 87 VDLGVAFENLFRKGGPLYPAVSLGSGQGVTIN 118
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting
New Gene (RING) finger domain. This SPRY domain is
found at the N-terminus of RING finger domains which are
present in a variety of functionally distinct proteins
and known to be involved in protein-protein and
protein-DNA interactions. RING-finger domain is a type
of Zn-finger that binds two Zn atoms and is identified
in proteins with a wide range of functions such as viral
replication, signal transduction, and development.
Length = 121
Score = 60.8 bits (148), Expect = 6e-11
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 609 GNGVGDDLYSFGFDGAH--LWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTFN 666
G G+GDD YSF +DG +W E P T + K GDV+G LDL + F+ N
Sbjct: 31 GYGIGDDEYSFAYDGCRQLIW---YNAESRPHTHPRW-KPGDVVGCLLDLDKKQMIFSLN 86
Query: 667 GSLVSGAFRDFN-LDGMFFPVISCSSKLSCRFLFG 700
G+ + F FF S S C F FG
Sbjct: 87 GNRLPPERLPFTSASSGFFAAASFMSFQQCEFNFG 121
Score = 53.9 bits (130), Expect = 2e-08
Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 30/128 (23%)
Query: 1013 GKWYFEFEILTAGPMRVGWARVDC----APGAQLGSDENSWAFDG----------FNRHI 1058
G WY+E +LT+G M++GWA D G +G DE S+A+DG H
Sbjct: 1 GVWYYEVTVLTSGVMQIGWATKDSKFLNHEGYGIGDDEYSFAYDGCRQLIWYNAESRPHT 60
Query: 1059 KIN---------LFQQDKKDYSISGFSLNGELLMDALGGETTFADVQGEGFVPACTLGVG 1109
L DKK I FSLNG + L E GF A +
Sbjct: 61 HPRWKPGDVVGCLLDLDKK-QMI--FSLNG----NRLPPERLPFTSASSGFFAAASFMSF 113
Query: 1110 QRAKLTFG 1117
Q+ + FG
Sbjct: 114 QQCEFNFG 121
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the N-terminus
of RING finger protein 123 domain (also known as E3
ubiquitin-protein ligase RNF123). The ring finger domain
motif is present in a variety of functionally distinct
proteins and known to be involved in protein-protein and
protein-DNA interactions. RNF123 displays E3 ubiquitin
ligase activity toward the cyclin-dependent kinase
inhibitor p27 (Kip1).
Length = 128
Score = 57.7 bits (140), Expect = 1e-09
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 1001 TYRAEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAPGAQ--LGSDENSWAFDGFNRHI 1058
+ RA N V GKW +E + T G M++GWA + C + +G +S+A+DG NR
Sbjct: 1 SIRA--NACVYKGKWMYEVTLGTKGIMQIGWATISCRFTQEEGVGDTPDSYAYDG-NRVR 57
Query: 1059 KINLFQQDKKDYSISG---------------FSLNGELLMDALGGETTFADV---QGEGF 1100
K N+ Q + ++G F NG +LG F +V G +
Sbjct: 58 KWNVSTQKYGEPWVAGDVIGCCIDLDEGTISFYRNGR----SLG--VAFDNVRRGPGLAY 111
Query: 1101 VPACTLGVGQRAKLTFG 1117
PA +L G+ +L FG
Sbjct: 112 FPAVSLSFGESVELNFG 128
Score = 52.7 bits (127), Expect = 6e-08
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 611 GVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKK---GDVIGVALDLSIPIITFTFNG 667
GVGD S+ +DG R + + Y + GDVIG +DL I+F NG
Sbjct: 41 GVGDTPDSYAYDG-------NRVRKWNVSTQKYGEPWVAGDVIGCCIDLDEGTISFYRNG 93
Query: 668 SLVSGAFRDFN-LDGM-FFPVISCSSKLSCRFLFG 700
+ AF + G+ +FP +S S S FG
Sbjct: 94 RSLGVAFDNVRRGPGLAYFPAVSLSFGESVELNFG 128
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2 mediates
the interaction with RbBP5 and has an important role in
regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 53.7 bits (130), Expect = 4e-08
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 35/142 (24%)
Query: 999 FRTYRAEKNYAVSSGKWYFEFEILTAGPM----RVGWARVDCAPGAQLGSDENSWAFDGF 1054
+R RA N+ V GKWYFE +IL G RVGW+R + + A +G D+ S+A+
Sbjct: 16 YRMARA--NHGVREGKWYFEVKILEGGGETGHVRVGWSRREASLQAPVGYDKYSYAY--- 70
Query: 1055 NRHIKINLFQQDK-KDYSISG-----------------FSLNGELLMDALGGETTFADVQ 1096
R F + K Y G F NG+ F D+
Sbjct: 71 -RDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLPKIEFFKNGKSQG------VAFEDIY 123
Query: 1097 GEGF-VPACTLGVGQRAKLTFG 1117
G G PA +L +G +L FG
Sbjct: 124 GTGGYYPAVSLYMGATVRLNFG 145
Score = 52.9 bits (128), Expect = 7e-08
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 612 VGDDLYSFGFDGAHLWTGGRRTEVIPGT-LEPYIKKGDVIGVALDLSIPIITFTFNGSLV 670
VG D YS+ + G + EP K+GDVIG + L P I F NG
Sbjct: 61 VGYDKYSYAYRDK---DGEKFHLSRGKPYGEPGFKEGDVIGCLITL--PKIEFFKNGKSQ 115
Query: 671 SGAFRDFNLDGMFFPVISCSSKLSCRFLFGGD 702
AF D G ++P +S + R FG +
Sbjct: 116 GVAFEDIYGTGGYYPAVSLYMGATVRLNFGPN 147
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well as
HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved
in important cellular processes. HECT E3 mediates the
direct transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 48.8 bits (117), Expect = 1e-06
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 612 VGDDLYSFGF---DGAHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTFNGS 668
G + S+G+ DG ++ GG E P GDV+G ++ I FT NG
Sbjct: 46 PGWEDGSYGYHGDDG-RVYLGGGEGENY----GPPFGTGDVVGCGINFKTGEIFFTKNGE 100
Query: 669 LVSGAFRDFNLDGMFFPVISCSSK 692
L+ AF + G +P + S
Sbjct: 101 LLGTAFENVV-KGRLYPTVGLGSP 123
Score = 33.0 bits (76), Expect = 0.44
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 30/140 (21%)
Query: 1000 RTYRAEKNYAVSSGKWYFEFEILTAGP---MRVGWARVDCAPGAQLGSDENSWAFDGFNR 1056
+ RA+ +YFE IL G + +G+ G ++ S+ + G +
Sbjct: 1 GSVRADHPIPPKVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDG 60
Query: 1057 HIKINLFQQDKKDYS---------------ISG---FSLNGELLMDALGGETTFADVQGE 1098
+ + + ++Y +G F+ NGELL T F +V
Sbjct: 61 RVYLG--GGEGENYGPPFGTGDVVGCGINFKTGEIFFTKNGELL------GTAFENVVKG 112
Query: 1099 GFVPACTLGV-GQRAKLTFG 1117
P LG G + ++ FG
Sbjct: 113 RLYPTVGLGSPGVKVRVNFG 132
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that
DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 44.9 bits (107), Expect = 4e-05
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 611 GVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPY---IKKGDVIGVALDLSIPIITFTFNG 667
+G D + FG+ G TG + E Y KGDVIG LDL I+F+ NG
Sbjct: 66 DLGTDKFGFGYGG----TGKKSHG---RQFEDYGEPFGKGDVIGCLLDLDNGTISFSKNG 118
Query: 668 SLVSGAFR--DFNLDGMFFPVISCSSKLSCRFLFGG 701
+ AF + FP + + F FG
Sbjct: 119 KDLGVAFDIPPKLRNQALFPAVCLKN-AEVEFNFGD 153
Score = 44.9 bits (107), Expect = 5e-05
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 31/132 (23%)
Query: 1007 NYAVS-SGKWYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQ 1065
V GK+Y+E + G RVGW+ D + LG+D+ + + G + K + Q
Sbjct: 33 TKGVKGKGKYYYEVTVTDEGLCRVGWSTEDASLD--LGTDKFGFGYGGTGK--KSHGRQF 88
Query: 1066 DKKDY-------------------SISGFSLNGELLMDALGGETTFADVQGEGFVPACTL 1106
+ DY +IS FS NG+ L A + PA L
Sbjct: 89 E--DYGEPFGKGDVIGCLLDLDNGTIS-FSKNGKDLGVAFDIPPKLR---NQALFPAVCL 142
Query: 1107 GVGQRAKLTFGQ 1118
+ FG
Sbjct: 143 K-NAEVEFNFGD 153
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate
receptors and protein O-mannosyltransferases.
Length = 57
Score = 42.3 bits (100), Expect = 5e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 162 GGFINWYHPMRIRHLTTGRYLSTNENNE 189
GGF+ W +R+RH+TTGRYL +++
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSHDEKL 28
Score = 38.9 bits (91), Expect = 8e-04
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 43 GEKVRVGDDLILVSVATERYLHTTKENDLSVVNASFHVT-----------HWSVQPY 88
G VR GD + L V T RYLH+ E + VT W ++P
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLIEPV 57
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum amyloid
P (SAP). Its function is specifically modulated by
E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 43.3 bits (103), Expect = 2e-04
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 612 VGDDLYSFGFDG-AHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDL--SIPIITFTFNGS 668
+G++ S+G+ T G+ + G EP+ +GDVIG LDL I+FT NG
Sbjct: 85 LGEEKLSYGYGSTGKKSTNGKFEDY--G--EPF-GEGDVIGCYLDLESEPVEISFTKNGK 139
Query: 669 LVSGAFRDFNL--DGMFFPVISCSSKLSCRFLF 699
+ AFR FP I +C
Sbjct: 140 DLGVAFRIDKELEGKALFPHILTK---NCAVEV 169
Score = 40.6 bits (96), Expect = 0.002
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 17/64 (26%)
Query: 1003 RAEKNYAVSSGKWYFEFEILTAGPM-------------RVGWARVDCAPGAQLGSDENSW 1049
RA Y V GK FE ++L P+ RVGW+ + QLG ++ S+
Sbjct: 37 RA--TYGVRKGKVCFEVKVLENLPVKHLPTEETDPHVVRVGWSVDSSSL--QLGEEKLSY 92
Query: 1050 AFDG 1053
+
Sbjct: 93 GYGS 96
>gnl|CDD|240483 cd12903, SPRY_PRY_SPRYD4, PRY/SPRY domain containing protein 4
(SPRYD4). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain
and is encoded by the SPRYD4 gene. SPRYD4 (SPRY
containing domain 4) is ubiquitously expressed in many
human tissues, most strongly in kidney, bladder, brain,
thymus and stomach. Subcellular localization demonstrates
that SPRYD4 protein is localized in the nucleus when
overexpressed in COS-7 green monkey cell. It has remained
uncharacterized thus far.
Length = 169
Score = 39.1 bits (91), Expect = 0.006
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 985 DALLAEQNRIRFMSFRTYRAEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAPGAQLGS 1044
D +QN RF + A + V SG+ Y+E + + R+G A VD + +G
Sbjct: 29 DPTKVQQNPERFRDWAVVLA--DTPVESGRHYWEVTVKRSQEFRIGVADVDMSRDECIGV 86
Query: 1045 DENSWAFDGFNRHIKINLFQQDKKDYSISGFSLNGE--LLMDALGGETTFADVQGEGFV 1101
D SW F R + + LL+D G+ + D V
Sbjct: 87 DSRSWVFAYAQRKWYA---MIASETVPVPNIGKPERVGLLLDYEAGKLSLVDTSKNSVV 142
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium and
rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 37.8 bits (88), Expect = 0.009
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 608 GGNGVGDDLYSFGFDGAHLWTG--GRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTF 665
NG+G +L S+G+ + +G + + GDVIGVALDL I F
Sbjct: 29 LNNGLGIELSSYGYSLG-VSSGNTYSGGSTVASFGAGF-TAGDVIGVALDLDAGKIWFYK 86
Query: 666 NG 667
NG
Sbjct: 87 NG 88
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite motif-containing
proteins 1, 9, 18, 36, 46, 67,76 (TRIM1, TRIM9, TRIM18,
TRIM36, TRIM46, TRIM67, TRIM76). This domain, consisting
of the distinct N-terminal PRY subdomain followed by the
SPRY subdomain, is found at the C-terminus of several
Class I TRIM proteins, including TRIM1, TRIM9, TRIM18,
TRIM36, TRIM46, TRIM67 and TRIM76. TRIM1 (also known as
MID2) and its close homolog, TRIM18 (also known as MID1),
both contain a B30.2-like domain at their C-terminus and
a single fibronectin type III (FN3) motif between it and
their N-terminal RBCC domain. Their coiled-coil motifs
mediate both homo- and heterodimerization, a prerequisite
for association of the rapamycin-sensitive PP2A
regulatory subunit Alpha 4 with microtubules. Mutations
in TRIM18 have shown to cause Opitz syndrome, a disorder
causing congenital anomalies such as cleft lip and palate
as well as heart defects. TRIM9 is expressed mainly in
the cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5) is
a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in protein
kinase A signaling as well as vesicular trafficking. It
has also been implicated in Duchenne muscular dystrophy
and cardiac disease.
Length = 169
Score = 35.0 bits (81), Expect = 0.13
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 1009 AVSSGKWYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQDKK 1068
A+SSG+ Y+E + + RVG A LG + SW R + D K
Sbjct: 51 AISSGRHYWEVSVDRSTSYRVGVAYKSVPRDEDLGKNSTSWCLR---RTNNRYSARHDGK 107
Query: 1069 DYSIS 1073
++
Sbjct: 108 VVDLT 112
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 34.9 bits (81), Expect = 0.15
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 644 IKKGDVIGVALDLSIPIITFTFN----GSLVSGAFRDFNLDGMFFPVIS 688
I G VIGV LDL ++F N G + AF NL G+F+P S
Sbjct: 113 ITVGSVIGVLLDLDRGTLSFYVNDEPQGPV---AFT--NLPGLFYPAFS 156
Score = 30.7 bits (70), Expect = 3.7
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 966 VRTLLVYGYNLDPPTGEQQDALLAEQNR-IRFMSFRTYRAEKNYAVSSGKWYFEFEI--L 1022
++T V + DP +G D +L+ N + S+ + S G Y+E I
Sbjct: 2 LQTSEVAWFQFDPSSG-HPDIILSNDNLTVTCSSYEDRVVLGSVGFSRGVHYWEVTIDRY 60
Query: 1023 TAGP-MRVGWARVDCAPGAQLGSDENSWA 1050
P G AR D A LG D+ WA
Sbjct: 61 DGHPDPAFGVARADVAKDKMLGKDDKGWA 89
>gnl|CDD|240459 cd12879, SPRY3_RyR, SPRY domain 3 (SPRY3) of ryanodine receptor
(RyR). This SPRY domain (SPRY3) is the third of three
structural repeats in all three isoforms of the ryanodine
receptor (RyR), which are the major Ca2+ release channels
in the membranes of sarcoplasmic reticulum (SR). There
are three RyR genes in mammals; the skeletal RyR1, the
cardiac RyR2 and the brain RyR3. The three SPRY domains
are located in the N-terminal part of the cytoplasmic
region of the RyRs, but no specific function has been
found for this third SPRY domain of the RyRs.
Length = 151
Score = 34.2 bits (79), Expect = 0.22
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 1312 FVEATSKEILQIELG 1326
FV TSKE+LQ ELG
Sbjct: 137 FVRPTSKEVLQFELG 151
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple
functions via interactions with various proteins. RanBP9
and RanBP10 also act as androgen receptor (AR)
coactivators. Both consist of the N-terminal proline-
and glutamine-rich regions, the SPRY domain, and
LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a
complex with CD39, a prototypic member of the NTPDase
family, thus down-regulating activity substantially.
RanBP10 enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein
expression pattern different from RanBPM in various cell
lines. RanBP10 is highly expressed in AR-positive
prostate cancer LNCaP cells, while RanBPM is abundant in
WI-38 and MCF-7 cells.
Length = 153
Score = 33.7 bits (78), Expect = 0.27
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 646 KGDVIGVALDLSIPIITFTFNGSLVSGAFRDFNLDGMFFPVI 687
GDVIG ++ I +T NG + AFRD D +P +
Sbjct: 98 TGDVIGCGINFVDNTIFYTKNGVNLGTAFRDL-PDKNLYPTV 138
>gnl|CDD|240460 cd12880, SPRYD7, SPRY domain-containing protein 7. This family
contains SPRY domain-containing protein 7 (also known as
SPRY domain-containing protein 7 or CLL deletion region
gene 6 protein homolog or CLLD6 or chronic lymphocytic
leukemia deletion region gene 6 protein homolog). In
humans, CLLD6 is highly expressed in heart, skeletal
muscle, and testis as well as cancer cell lines. It also
has cross-species conservation, suggesting that it is
likely to carry out important cellular processes.
Length = 160
Score = 34.1 bits (79), Expect = 0.27
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 638 GTLEPYIKKGDVIGVALDLSIPIITFTFNGSLVSGAFRDFNLDGMFFPVISC--SSKLSC 695
L+ +++GDVIGV D + F NG + + G +PV+ + L
Sbjct: 82 AKLKQNVEEGDVIGVTYDHV--ELNFYLNGKNLECPI--TGIRGTVYPVVYVDDGAILDV 137
Query: 696 RFLFGGDHGRLKYIPPEEFS-PLVE-SLL 722
F ++ PP F L E S+L
Sbjct: 138 IFDN------FEHPPPSGFGEILFEQSIL 160
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to
prevent the progression of NSCLC due to its role in
regulating Pyk2 expression.
Length = 187
Score = 34.1 bits (79), Expect = 0.35
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 641 EPYIKKGDVIGVALDLSIPIITFTFNGSLVSGAFRDFNLDG-MFFPVIS 688
E + +G +IGV LD+ +TF NG + AF DG +P++S
Sbjct: 110 EKFGNQGTIIGVHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKLYPMVS 158
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 33.1 bits (76), Expect = 0.60
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 626 LWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTFNGSLVSGAFRDFNLDGM-FF 684
L+ G + L P +GD I LD+ ++F NG AF ++D +
Sbjct: 88 LYHNGEKLSR----LSPKFTQGDYITCVLDMEERTLSFGKNGEEPGVAFE--DVDSTELY 141
Query: 685 PVISCSS 691
P + S
Sbjct: 142 PCVMFYS 148
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein;
Provisional.
Length = 209
Score = 31.6 bits (71), Expect = 2.2
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 1015 WYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQDKKDYSISG 1074
W ++ + P A D PG + FD + K + KKD +
Sbjct: 133 WIGFVDLAVSAPAAAAAAEFDRTPG--------DFGFDLLALYPKDAAKMEKKKDKEL-- 182
Query: 1075 FSLNGELLMDALGGETTFADVQGEGF 1100
NG L M A+GG T + + G GF
Sbjct: 183 --KNGRLAMVAIGGIATGSAITGHGF 206
>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional.
Length = 602
Score = 31.6 bits (72), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 653 ALDLSIPIITFTFNGSLVSGAFRDF 677
L + P I FTFNG VSG F+ +
Sbjct: 208 TLAVVFPDIKFTFNGKKVSGKFKKY 232
>gnl|CDD|240490 cd12910, SPRY_SSH4_like, SPRY domain in SSH4 and similar proteins.
This family includes SPRY domain in SSH4 (suppressor of
SHR3 null mutation protein 4) and similar proteins. SSH4
is a component of the endosome-vacuole trafficking
pathway that regulates nutrient transport and may be
involved in processes determining whether plasma
membrane proteins are degraded or routed to the plasma
membrane. The SPRY domain in SSH4 may be involved in
cargo recognition, either directly or by combination
with other adaptors, possibly leading to a higher
selectivity. In yeast, SSH4 and the homologous protein
EAR1 (endosomal adapter of RSP5) recruit Rsp5p, an
essential ubiquitin ligase of the Nedd4 family, and
assist it in its function at multivesicular bodies by
directing the ubiquitylation of specific cargoes.
Length = 191
Score = 30.8 bits (70), Expect = 3.9
Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 613 GDDLYSFGFDGAHLWTGGRRTEVIPG--TLEPYIKKGDVIGVALDLSIPIITFTFNGSLV 670
G S H G R G P ++GD IG+ S + FT NG +
Sbjct: 89 GWHRGSLAV---HSDDGHRYINDPFGGKDFTPPFREGDTIGIGYKFSSGTVFFTRNGKKL 145
Query: 671 SGAFRDFNLDGMFFPVI 687
LD V
Sbjct: 146 GEWDLGEELDAEDDGVT 162
>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.
Length = 261
Score = 30.8 bits (70), Expect = 4.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 339 LINYFAQPEE--DMEHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVN 396
+INY + EE D+ E K+ A+ + D+ E ++NLI A+ + + ++N
Sbjct: 35 VINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGTLD---VMIN 91
Query: 397 LAGDE 401
AG E
Sbjct: 92 NAGIE 96
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a 2-AEP-specific
transporter likely [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 353
Score = 30.4 bits (69), Expect = 8.0
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 1010 VSSGKWYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQDKKD 1069
V W RVG + CAPG + R I +
Sbjct: 235 VGEVNW-LPGTRGGGSRARVGGLTLACAPGLAQPGA----SVRLAVRPEDIRVSPAGNAA 289
Query: 1070 YSISGFSLNGELL---------MDALGGETTFADV 1095
+ + E L ++ L G+ ADV
Sbjct: 290 NLLLARVEDMEFLGAFYRLRLRLEGLPGQALVADV 324
>gnl|CDD|182116 PRK09856, PRK09856, fructoselysine 3-epimerase; Provisional.
Length = 275
Score = 30.2 bits (68), Expect = 9.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 615 DLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKKGD---VIGVALDLSIPIITFT 664
D G+DG +W GGR P P +K G + +A +PII +T
Sbjct: 21 DASELGYDGIEIW-GGR-----PHAFAPDLKAGGIKQIKALAQTYQMPIIGYT 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 80,225,553
Number of extensions: 7996064
Number of successful extensions: 6534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6498
Number of HSP's successfully gapped: 53
Length of query: 1568
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1458
Effective length of database: 6,058,662
Effective search space: 8833529196
Effective search space used: 8833529196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.2 bits)