RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13309
(1568 letters)
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION
channel, membrane PROT malignant hyperthermia, cardiac
arrhythmia; 2.50A {Oryctolagus cuniculus}
Length = 559
Score = 443 bits (1140), Expect = e-140
Identities = 210/455 (46%), Positives = 293/455 (64%), Gaps = 15/455 (3%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL+CL+TS S DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVSV++
Sbjct: 117 YLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGDDLILVSVSS 176
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVSLYL 119
ERYLH + + V+ASF T W++ P + YV V+ ++ L
Sbjct: 177 ERYLHLSTASGELQVDASFMQTLWNMNPICSCCEE-GYVTGGHVLRLFHG----HMDECL 231
Query: 120 HPGLICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMRIRHLTTG 179
D + +V YEGG+V + ARSLWRLE R W+G + W P+RIRH+TTG
Sbjct: 232 TISAADSDDQR---RLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTG 288
Query: 180 RYLSTNENNELYLVTRDEATTASSTFCLRQEKDDQKIVLEDKDLEVIGAPIIKYGDSTVL 239
RYL+ E+ L +V +A T +++FC R K+ + +D+E +G P IKYG+S
Sbjct: 289 RYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPK-RDVEGMGPPEIKYGESLCF 347
Query: 240 VQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESRTARVIRK 299
VQH +GLWLTY + + K LG V +K+A+LH+EG MDD L +R Q+EES+ AR+I
Sbjct: 348 VQHVASGLWLTYAAPDPKALRLG-VLKKKAILHQEGHMDDALFLTRCQQEESQAARMIHS 406
Query: 300 CSSLFTQFISGLEALQVNRRHSLFCA--SVNLNEMVMCLEDLINYFAQPEEDMEHEEKQN 357
+ L+ QFI GL++ R S A ++ + +++ L+DLI YF P E+++HEEKQ+
Sbjct: 407 TAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILSLQDLIGYFEPPSEELQHEEKQS 466
Query: 358 RLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIISGYLYQLL 417
+LR+LRNRQ LFQEEG+L+L+L ID++NV T+ AG+E+ +SW I LY+LL
Sbjct: 467 KLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIVNLLYELL 526
Query: 418 AAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEG 452
A++I+GN NCA F+ L+W+ S+L +S G
Sbjct: 527 ASLIRGNRANCALFS--TNLDWVVSKLDRLEASSG 559
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor
domain, binding core domain, signaling protein; 3.00A
{Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Length = 604
Score = 291 bits (746), Expect = 2e-85
Identities = 87/488 (17%), Positives = 165/488 (33%), Gaps = 46/488 (9%)
Query: 1 YLACLSTSSSN-DKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL + +K + V L E E W+ + P K RS G+ V +GD ++L V
Sbjct: 131 YLTVNKRLPALLEKNAMRVTLDEAG-NEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNA 189
Query: 60 ERYLHTTKENDLSV-----VNASFHVTHWSVQPYGTGISRM-KYVMCLEVMSCGSSTEVT 113
+ LH + + VN+ T W + + + +V+ + +
Sbjct: 190 GQPLHASSHQLVDNPGANEVNSVNANTSWKIVLFMKWSDNKDDILKGGDVVRLFHAEQ-- 247
Query: 114 NVSLYLHPGLICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWA-GGFINWYHPMR 172
+L + +L + + + +++LW +E+ + A GG W R
Sbjct: 248 --EKFLTADEHRKKQHVFLR-TTGRQSATSATSSKALWEVEVVQHDPARGGAGYWNSLFR 304
Query: 173 IRHLTTGRYLSTN-----ENNELYLVTRDEATTASSTFCLR-------------QEKDDQ 214
+HL TG YL+ E L + +S LR E +D
Sbjct: 305 FKHLATGHYLAAEVDPDFEEEALEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDI 364
Query: 215 KIVLEDKDLEVIGAPIIKYGDSTVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEE 274
+ E + G + +S V ++H W+ + K+ K +
Sbjct: 365 SSIFELDPTTLRGGDSLVPRNSYVRLRHLATNTWVHSTNIPIDKEEE-KPVMLKIGTSPL 423
Query: 275 GKMDDGLDFSRSQEEESRTARVIRKCSSLFTQFISGLEALQVNRRHSLFCASVNLNEMVM 334
+ + E R S + LE + + +
Sbjct: 424 KEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKGTITQNER--------RSVTK 475
Query: 335 CLEDLINYFAQPEEDMEHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFL 394
LEDL+ + + + + R RQ L +E+ IL I + + G +
Sbjct: 476 LLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDAGDGPM 535
Query: 395 VNL--AGDESGQSWDIISGYLYQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEG 452
+ L GD+ + I+ Y++L + N A + ++ ++G +E
Sbjct: 536 LRLEELGDQRHAPFRHIARLAYRVLRHSQQDYRKNQEYIA--KQFGFMQKQIGYDVLAED 593
Query: 453 TGMLDVLH 460
T + +LH
Sbjct: 594 T-ITALLH 600
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
3rqr_A
Length = 210
Score = 208 bits (530), Expect = 2e-61
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 752 DTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCL 811
+ F P PV+T + +P +++ +K AE HE WA +KI+ WMYGE D+ K HP L
Sbjct: 2 NANFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPML 61
Query: 812 IQFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSR 871
++ S + R + S L ++A + I +
Sbjct: 62 RP-----YKTFSEKDKEIYRWPIKES---------------LKAMIAWEWTIEKAREGEE 101
Query: 872 IKT-------VRLPNEPFMQPNGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERI 924
+T + + + GY P P DLS + L+ +++ + +QLAEN HN W +++
Sbjct: 102 ERTEKKKTRKISQTAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKK 161
Query: 925 QQGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGYNLD 977
Q+ G P LVPY + K +R+ A E ++ L + GY +
Sbjct: 162 QELEAKGGG------THPLLVPYDTLTAKEKARDREKAQELLKFLQMNGYAVT 208
Score = 104 bits (260), Expect = 3e-25
Identities = 27/123 (21%), Positives = 60/123 (48%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ + + K++ +++ AE TH WA ++IQ W YG N D ++ P L P
Sbjct: 4 NFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + K+ R E+++ ++ + + ++ +++ ++ R + +TY +
Sbjct: 64 YKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYDPRE 123
Query: 1007 NYA 1009
Y
Sbjct: 124 GYN 126
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
Length = 207
Score = 203 bits (517), Expect = 8e-60
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 43/237 (18%)
Query: 752 DTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCL 811
+ F P P++T +LP +E I K AE+ H+ WA +K ++GW YG D+ K HP +
Sbjct: 2 NANFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLI 61
Query: 812 IQF------ERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISM 865
F E+ I+R +R S L T+LA+G+ +
Sbjct: 62 RPFKTLTEKEKEIYRWPARES--------------------------LKTMLAVGWTVER 95
Query: 866 DKPPSRIKTVRLPNEPFM-----QPNGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWA 920
K + R + Q N Y PAPLDLS + L+ +++ +V+ +AEN HN+WA
Sbjct: 96 TKEGEALVQQRENEKLRSVSQANQGNSYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWA 155
Query: 921 KERIQQGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGYNLD 977
K++ + + G P LVPY + A K +R+ A + + L V G +
Sbjct: 156 KKKKLELESKGGG------SHPLLVPYDTLTAAEKFKDREKAQDLFKFLQVNGIIVS 206
Score = 101 bits (253), Expect = 2e-24
Identities = 29/112 (25%), Positives = 61/112 (54%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P++ +L K+E +V + AE++H+ WA ++ Q GW YG++ D ++ P + P
Sbjct: 4 NFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIRP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMS 998
+ + + K+ R A E+++T+L G+ ++ + E ++R +S
Sbjct: 64 FKTLTEKEKEIYRWPARESLKTMLAVGWTVERTKEGEALVQQRENEKLRSVS 115
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport;
1.65A {Mus musculus}
Length = 209
Score = 197 bits (502), Expect = 9e-58
Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 45/238 (18%)
Query: 752 DTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCL 811
+ F P PVDTS IT+P +E +K AE+ H+ W+M+K+ GW+YGE D KI P +
Sbjct: 2 NANFNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSMDKLANGWIYGEIYSDSSKIQPLM 61
Query: 812 IQF------ERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISM 865
+ E+ I+R + S L T+LA G+ I
Sbjct: 62 KPYKLLSEKEKEIYRWPIKES--------------------------LKTMLAWGWRIER 95
Query: 866 DKPPS----RIKTVRLPNEPFM---QPNGYKPAPLDLSAIALTPKMEELVDQLAENTHNL 918
+ +T R+ + +GY P +D+S + L+ + + + +AEN HN+
Sbjct: 96 TREGDSMALYNRTRRISQTSQVSIDAAHGYSPRAIDMSNVTLSRDLHAMAEMMAENYHNI 155
Query: 919 WAKERIQQGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGYNL 976
WAK++ + + G P LVPY + A K +R+ A + + L + GY +
Sbjct: 156 WAKKKKLELESKG------GGNHPLLVPYDTLTAAEKAKDREKAQDIFKFLQISGYVV 207
Score = 102 bits (255), Expect = 1e-24
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 887 GYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVP 946
+ P P+D S I + K+E +++ AE++H+ W+ +++ GW YG P + P
Sbjct: 4 NFNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSMDKLANGWIYGEIYSDSSKIQPLMKP 63
Query: 947 YGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRIRFMSFRTYRAEK 1006
Y + + K+ R E+++T+L +G+ ++ AL RI S + A
Sbjct: 64 YKLLSEKEKEIYRWPIKESLKTMLAWGWRIERTREGDSMALYNRTRRISQTSQVSIDAAH 123
Query: 1007 NY 1008
Y
Sbjct: 124 GY 125
Score = 64.4 bits (156), Expect = 2e-11
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 750 EDDTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHP 809
+ + P +D S +TL + + + +AEN H +WA K G HP
Sbjct: 120 DAAHGYSPRAIDMSNVTLSRDLHAMAEMMAENYHNIWAKKKKLELESKGGGN------HP 173
Query: 810 CLIQFER 816
L+ ++
Sbjct: 174 LLVPYDT 180
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor,
IP3-binding core, calcium channel,protein- ligand
complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus}
SCOP: a.118.22.1 b.42.6.1
Length = 381
Score = 200 bits (509), Expect = 2e-56
Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 33/347 (9%)
Query: 135 IVVYEGGSVMSQARSLWRLELARTK-WAGGFINWYHPMRIRHLTTGRYLSTNENN----- 188
+ + + +++LW +E+ + GG W R +HL TG YL+ +
Sbjct: 43 TTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEE 102
Query: 189 ELYLVTRDEATTASSTFCLRQEKDDQKIVL----EDKDLEVI---GAPIIKYGDSTV--- 238
L + +S LR ++ L E D+ I ++ GDS V
Sbjct: 103 CLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPRN 162
Query: 239 ---LVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESRTAR 295
++H W+ + K+ V K + + E R
Sbjct: 163 SYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLK-IGTSPLKEDKEAFAIVPVSPAEVRDLD 221
Query: 296 VIRKCSSLFTQFISGLEALQVNRRHSLFCASVNLNEMVMCLEDLINYFAQPEEDMEHEEK 355
S + LE + + + LEDL+ + + +
Sbjct: 222 FANDASKVLGSIAGKLEKGTITQNE--------RRSVTKLLEDLVYFVTGGTNSGQDVLE 273
Query: 356 QNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNL--AGDESGQSWDIISGYL 413
+ R RQ L +E+ IL I + + G ++ L GD+ + I
Sbjct: 274 VVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLEELGDQRHAPFRHICRLC 333
Query: 414 YQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEGTGMLDVLH 460
Y++L + N A + ++ ++G +E T + +LH
Sbjct: 334 YRVLRHSQQDYRKNQEYIA--KQFGFMQKQIGYDVLAEDT-ITALLH 377
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release
channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2,
disease mutation; 1.70A {Mus musculus} PDB: 3im5_A
3im7_A 3qr5_A 3ila_A 3hsm_A
Length = 217
Score = 128 bits (321), Expect = 2e-33
Identities = 63/88 (71%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 1 YLACLSTS-SSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL CLSTS SS DKL+FDVGLQE + GEACWWT+HPASKQRSEGEKVRVGDDLILVS+++
Sbjct: 129 YLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSMSS 188
Query: 60 ERYLHTTKENDLSVVNASFHVTHWSVQP 87
ERYLH + N V+A+F T WSV P
Sbjct: 189 ERYLHLSYGNSSWHVDAAFQQTLWSVAP 216
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative,
structural genomics, MI center for structural genomics
(MCSG); 2.54A {Bacteroides thetaiotaomicron}
Length = 103
Score = 109 bits (274), Expect = 2e-28
Identities = 34/96 (35%), Positives = 56/96 (58%)
Query: 884 QPNGYKPAPLDLSAIALTPKMEELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPH 943
Y P P+DLS + L + +L +++AEN H +WAK RI +GWTYG D + P
Sbjct: 7 NKLDYIPEPMDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPC 66
Query: 944 LVPYGKVDDAIKKANRDTASETVRTLLVYGYNLDPP 979
LVPY ++ + K+ +R+TA T++ + G+ ++
Sbjct: 67 LVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRIEKE 102
Score = 106 bits (265), Expect = 3e-27
Identities = 28/68 (41%), Positives = 48/68 (70%)
Query: 749 VEDDTAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIH 808
E+ ++P P+D S++ LP + + +++AEN+HE+WA +I+ GW YGE+RDD+ K H
Sbjct: 5 KENKLDYIPEPMDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKH 64
Query: 809 PCLIQFER 816
PCL+ ++
Sbjct: 65 PCLVPYDE 72
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3
receptor suppressor domain, calcium channe trefoil fold,
membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Length = 246
Score = 92.6 bits (229), Expect = 8e-21
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 1 YLACLSTSSSN-DKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVAT 59
YL + +K + V L E E W+ + P K RS G+ V +GD ++L V
Sbjct: 146 YLTVNKRLPALLEKNAMRVTLDEAG-NEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNA 204
Query: 60 ERYLHTTKENDLSV-----VNASFHVTHWSVQPY 88
+ LH + + VN+ T W + +
Sbjct: 205 GQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLF 238
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 91.5 bits (227), Expect = 9e-21
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 34/165 (20%)
Query: 998 SFRTYRAEKNYAVSSGKWYFEFEIL---TAGPMRVGWARVDCAPGAQLGSDENSWAFDGF 1054
+ RA ++ V G WYFE + R+GW++ A LG D+ S+++
Sbjct: 38 GYSMVRA--SHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSK 95
Query: 1055 NRHIKINLFQQDKKDYS-------ISGFSLN-----------GELLMDALGGE--TTFAD 1094
Q K YS + GF +N E++ G + D
Sbjct: 96 KGTK---FHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD 152
Query: 1095 VQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFSMCGLQEGYEPFC 1139
+ + PA +L + FG KY Y P
Sbjct: 153 IFEGVYFPAISLYKSCTVSINFGPC---FKYP---PKDLTYRPMS 191
Score = 63.7 bits (155), Expect = 3e-11
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 609 GNGVGDDLYSFGFDG--AHLWTGGRRTEVIPGTLEPY---IKKGDVIGVALDLSIPIIT- 662
+G D +S+ + + + Y +GDV+G ++L I+
Sbjct: 80 QAPLGYDKFSYSWRSKKGTKFHQSIG--------KHYSSGYGQGDVLGFYINLPEDTISG 131
Query: 663 -------FTFNGSLVSGAFRDFNLDGMFFPVISCSSKLSCRFLFGGDHGRLKYIPPEE-- 713
F NG A++D +G++FP IS + FG KY P +
Sbjct: 132 RGSSEIIFYKNGVNQGVAYKDI-FEGVYFPAISLYKSCTVSINFGPC---FKYPPKDLTY 187
Query: 714 --FSPLVESLLPHQVLS 728
S + + L+
Sbjct: 188 RPMSDMGWGAVVEHTLA 204
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo sapiens}
Length = 171
Score = 74.6 bits (183), Expect = 3e-15
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 35/148 (23%)
Query: 998 SFRTYRAEKNYAVSSGKWYFEFEILTAGP---MRVGWARVDCAPGAQLGSDENSWAFDG- 1053
Y A + ++ YFE I+ +G + VG + Q G +S A+
Sbjct: 26 EVGCYVA--SRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHAD 83
Query: 1054 ----FNRH-----------------IKINLFQQDKKDYSISGFSLNGELLMDALGGETTF 1092
+N I D + I F+ NG+ +
Sbjct: 84 DGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIF-FTKNGKRVGST------I 136
Query: 1093 ADVQGEGFVPACTL-GVGQRAKLTFGQD 1119
+ +G PA + +G+ +L +
Sbjct: 137 MPMSPDGLFPAVGMHSLGEEVRLHLNAE 164
Score = 51.5 bits (123), Expect = 3e-07
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 610 NGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPY---IKKGDVIGV-----ALDLSIPII 661
+ G S + G+ + GD IG + D+ I
Sbjct: 69 HQPGWLPDSVAYHA----DDGKLYNG-RAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQI 123
Query: 662 TFTFNGSLVSGAFRDFNLDGMFFPVISCSSK-LSCRFLFGGD 702
FT NG V + FP + S R +
Sbjct: 124 FFTKNGKRVGSTIMPMS-PDGLFPAVGMHSLGEEVRLHLNAE 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 1e-13
Identities = 100/703 (14%), Positives = 200/703 (28%), Gaps = 228/703 (32%)
Query: 936 PDMARSPHLVPYGKVDDAIKKANRDTASETVRTLLVYGYNLDPPTGEQQDALLAEQNRI- 994
DM +S ++ ++D I + + TL ++ LL++Q +
Sbjct: 39 QDMPKS--ILSKEEIDHIIMSKDAVS-----GTLRLF------------WTLLSKQEEMV 79
Query: 995 -RFMSFRTYRAEKNYAVSSGKWYFE-FEILTAGPMRVGWARVDCAPGAQLGSDENSWAFD 1052
+F+ NY K+ + P + ++ +L +D +A
Sbjct: 80 QKFVE---EVLRINY-----KFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKY 129
Query: 1053 GFNRH-----IKINLFQQDKKDYSISGFSLNGELLMDALG-GETTFADVQGEGFVPACTL 1106
+R ++ L + + ++G + LG G+T A + C
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVL----IDG---V--LGSGKTWVA-------LDVC-- 171
Query: 1107 GVGQRAKLTFGQDVNQLKYFSMCGLQEGYEPFCVNMKRAVTYW-----YTRDQPIFENTD 1161
F + +W + + E
Sbjct: 172 -----------LSYKVQCKM----------DFKI-------FWLNLKNCNSPETVLEMLQ 203
Query: 1162 DYPSVIDVTRIPAGSDTPPCLKISHNTFETMEKANWEFLRL--------SLPVTCMSTFI 1213
ID + S N + E RL L V +
Sbjct: 204 KLLYQID-------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------L 250
Query: 1214 DENEKQRRWKEIRNRQQILM-------MEAVDNTTPAHIEQI-MKSGFSMSDIKGKSASL 1265
+ + W +IL+ + + T HI + + SL
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSL 306
Query: 1266 PASVDQLRRYIEIKQSDLPS----------AVAAKKTREFRCPPREQPWRCFYCNLFVEA 1315
L +Y++ + DLP ++ A+ R+ W+
Sbjct: 307 ------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA--TWDNWK---------- 348
Query: 1316 TSKEILQIELGRTSTTLPLSAAVLQNSE-RH-----VIPQFPPRLKVQCLKPHQ-----W 1364
+ + +T + S VL+ +E R + FPP + P W
Sbjct: 349 ------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHI----PTILLSLIW 396
Query: 1365 ARVPNTSLEVHALKLSDIRGWSMLCEDPISMLALHIPEEDRCIDILELIEMEKLLSFHAH 1424
V + + V KL +S++ + P + IP I + +++E + H
Sbjct: 397 FDVIKSDVMVVVNKLHK---YSLVEKQPKEST-ISIPS----IYLELKVKLENEYALHRS 448
Query: 1425 TLTLYAAL-CYQA---------NYRAAHVLCQHVDQKQLLYAIQSEYMSGPLRQGFYDL- 1473
+ Y + + Y +H + H+ + E M+ R F D
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIE-----HPERMTL-FRMVFLDFR 501
Query: 1474 LIALHIESHATSMEVCKN------------EFIIPLGPKLKELYEDGEMGHSLRSLRTES 1521
+ I +T+ + +I PK + L + L +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIEENL 559
Query: 1522 IRPTMKMTDIAPDSIENIR-SLYSPHFPLDVVRDYIMTARRKQ 1563
I K TD+ +R +L + + + ++ Q
Sbjct: 560 ICS--KYTDL-------LRIALMAEDEAI-----FEEAHKQVQ 588
Score = 58.3 bits (140), Expect = 2e-08
Identities = 103/712 (14%), Positives = 212/712 (29%), Gaps = 212/712 (29%)
Query: 328 NLNEMVMCLEDLINYFAQP-EEDMEHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKIN 386
E +D+++ F ++ + ++ Q+ +++ L +EE ID I
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEE---------IDHI- 54
Query: 387 VITSQGFLVNLAGDESGQSWDIISGYLYQLLAAIIKGNHTNCAQFANTN-RLN--WLFSR 443
+ SG +L ++ +F R+N +L S
Sbjct: 55 --------IMSKDAVSG---------TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 444 LGSQ--ASSEGTGMLDVLHCVLIDSPEAL---NMMRDEHIKVIISLLEKHGRDPKVLDVL 498
+ ++ S T M L + + N+ R + + L + V ++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LI 155
Query: 499 CSLCVGNG---VAVRSSQNNICDYLLPGK----NLLLQTQLDEHIKVIISLLEKHGRDPK 551
+ +G+G VA+ + + K NL + ++++ LL + DP
Sbjct: 156 DGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPN 212
Query: 552 VLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQ-----LV-DHVASYVPYPGGGE 605
S + ++ ++I L + LL LV +V +
Sbjct: 213 ----WTSRS-DHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQN--------- 255
Query: 606 KWGGNGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKKGDVIGVALDLSIPIITFTF 665
+F L T R +V D + A I +
Sbjct: 256 AK-------AWNAFNLSCKILLT-TRFKQVT-----------DFLSAATTTHISLDHH-- 294
Query: 666 NGSLVSGAFRDFNLDGMFFPVISCS-SKLSCRFLFGGDHGRLKYIPPE--EFSPLVESLL 722
S + + + C L P E +P S++
Sbjct: 295 -----SMTLTPDEVKSLLLKYLDCRPQDL----------------PREVLTTNPRRLSII 333
Query: 723 PHQVLSIDPCFYFGNLPKVVLAGPW-HVEDDTAFVPTPVDTSMITL-PHYVENIRDKLA- 779
+ + + W HV D + T +++S+ L P + D+L+
Sbjct: 334 A-ESIRDGLATW----------DNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 780 --ENIHEMWAMNKIEAG-----WMYGERRDD---VRKIHP-CLI--QFERRIWRLCSRIS 826
+ I W + D V K+H L+ Q + + S
Sbjct: 381 FPPSA-------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 827 RLCSRIRSETS-----ILFYHPPRVKFHAKVLPTILA------IGYHISMDKPPSRI--- 872
L ++ +E + + Y+ P+ ++P L IG+H+ + P R+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 873 -----------KTVRLPNEPFMQPNGYKPAPLDL----SAIALT-PKMEELVDQLAENTH 916
+ +R + + L I PK E LV+ + +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 917 NLWAKERIQQGWTYGLNEDPDMARSPH--LV------PYGKV-DDAIKKANR 959
+ + ++ S + L+ + ++A K+ R
Sbjct: 554 KI----------------EENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 43.7 bits (102), Expect = 6e-04
Identities = 53/359 (14%), Positives = 106/359 (29%), Gaps = 90/359 (25%)
Query: 61 RYLHTTKENDLSVVNA--SFHVTHWSVQPYGTGISRMKYV-MCLEVMSCGSST---EVTN 114
+ L TT+ V + + TH S+ + ++ + + L+ + C EV
Sbjct: 267 KILLTTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 115 VSLYLHPGLICPDRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWYHPMRIR 174
+ +I + + W NW H +
Sbjct: 325 TNP-RRLSII----------------AESIRDGLATWD-------------NWKHVNCDK 354
Query: 175 HLTTGR----YLSTNENNELYL---VTRDEATTASSTFCL----RQEKDDQKIV--LEDK 221
T L E +++ V A + L + D +V L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 222 DLEVIGAPIIKYGDSTVLVQHSENGLWLTYKSYETKKKGLGK--VE--EKQAVLHEEGKM 277
L + K + + ++L K + L + V+ + +
Sbjct: 415 SL------VEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 278 DDGLD---FS--------RSQEEESRTARV-----------IRKCSSLFTQFISGLEALQ 315
LD +S E R+ IR S+ + S L LQ
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 316 VNRRHSLF-CASVNLNEMVMCLEDLINYFAQPEEDMEHEEKQNRLR-ALRNRQDLFQEE 372
+ + + C + E + + ++++ + EE++ + + LR AL + EE
Sbjct: 526 QLKFYKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 42.9 bits (100), Expect = 0.001
Identities = 98/733 (13%), Positives = 192/733 (26%), Gaps = 227/733 (30%)
Query: 767 LPHYVEN-IRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLIQFERRIWRLCSRI 825
L + + + + +++ +M I + E D + + R W L S+
Sbjct: 22 LSVFEDAFVDNFDCKDVQDM--PKSI----LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 826 SRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISMDKPPSRIKTVRLPNEPFMQP 885
+ + F + +L I Y M S IKT +P M
Sbjct: 76 EEMVQK----------------F----VEEVLRINYKFLM----SPIKTE--QRQPSMMT 109
Query: 886 NGYKPAPLDL-SAIALTPKM----EELVDQLAENTHNLWAKERIQQGWT-YGLNEDPDMA 939
Y L + + K + +L + L R + G +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLIDG------VL 159
Query: 940 RSPHLVPYGK---VDDA----------------IKKANRDTASETVRTLLVYGYNLDPPT 980
S GK D + N ++ + L Y +DP
Sbjct: 160 GS------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 981 GEQQDALLAEQNRIRFMS--FRTYRAEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAP 1038
+ D + RI + R K Y +L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-------LLVL---------------- 250
Query: 1039 GAQLGSDE--NSWAFDGFNRHIKINLFQQDKKDYSISGFSLNGELLMDALGGETT---FA 1093
N+ A++ FN KI L + K+ + D L TT
Sbjct: 251 ------LNVQNAKAWNAFNLSCKILLTTRFKQ-------------VTDFLSAATTTHISL 291
Query: 1094 DVQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFSMCGLQEGYEPFCVNMKRAVTYWYTRD 1153
D P + K L + P +++
Sbjct: 292 DHHSMTLTPDEVKSL--LLKYL-DCRPQDLPR-EVLTTN----PRRLSI----------- 332
Query: 1154 QPIFENTDDYPSVIDVTRIPAGSDTPPCLKISHNTFETMEKANWEFLRLSLPVTCMSTFI 1213
I E+ D + D + H + + + SL +
Sbjct: 333 --IAESIRDGLATWDNWK--------------HVNCDKLTTI----IESSL------NVL 366
Query: 1214 DENEKQRRWKEIRNRQQILMMEAVD-----------NTTPAHIEQIMKSGFSMSDIKGKS 1262
+ E ++ + + + + + + + ++ S ++ +
Sbjct: 367 EPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 1263 ASLPASVDQLRRYIEIKQSDLPSAVAAKKTREFRCPPRE-QPWRC--------FYCNLFV 1313
S+ + Y+E+K + + P+ FY +
Sbjct: 422 KESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HI 477
Query: 1314 EATSKEILQIELGRTSTTLPLSAAVLQNSERHVIPQFPPRLKVQCLKPHQWARVPNTSLE 1373
K I E + L L+ RH + + NT
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-----------GSILNT--- 523
Query: 1374 VHALKLSDIRGWSMLCEDPISMLALHIPEEDRCIDILE--LIEMEKLLSFHAHTLTLYAA 1431
L ++ + + I + P+ +R ++ + L ++E+ L +T L A
Sbjct: 524 -----LQQLKFY----KPYIC---DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 1432 LCYQAN--YRAAH 1442
L + + AH
Sbjct: 572 LMAEDEAIFEEAH 584
Score = 34.8 bits (79), Expect = 0.28
Identities = 69/507 (13%), Positives = 138/507 (27%), Gaps = 146/507 (28%)
Query: 4 CLSTSSSNDKLSFDVGLQEHSQGEACWWTVHPASKQRSEGEKVRVGDDLILVSVATERYL 63
++ +Q + W + L ++ ++ L
Sbjct: 165 WVALDVCLSY-----KVQCKMDFKIFWLNL---------KNCNSPETVLEML----QKLL 206
Query: 64 HTTKENDLSVVNASFHV---THWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVSLYLH 120
+ N S + S ++ H + Y CL V+ V N +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNA 261
Query: 121 PGLICP----DRSKYLFHIVVYEGGSVMSQARSLWRLELARTKWAGGFINWY-------- 168
L C R K + + + +S L K + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLP 319
Query: 169 ------HPM-------RIRHLTTGRYLSTNENNELYL-VTRDEATTASSTFCLRQEKDDQ 214
+P IR L+T +N + V D+ TT + E +
Sbjct: 320 REVLTTNPRRLSIIAESIRD-----GLATWDN---WKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 215 KIVLEDKDLEVI--GAPIIKYGDSTVLVQHSENGLWLTYKSYET-------KKKGL--GK 263
+ + + L V A I + +L +W + K L +
Sbjct: 372 RKMFDR--LSVFPPSAHI----PTILLSL-----IWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 264 VEEKQAVLHEEGKMDDGLDFSRSQEEESRTARVIRKCSSLFTQFISGLEALQVNRRHSLF 323
+E + L+ E E R I ++ + + F
Sbjct: 421 PKESTISIP-----SIYLELKVKLENEYALHRSI-------------VDHYNIPKT---F 459
Query: 324 CASVNLNEMVMCLEDLINYFAQP----EEDMEHEEKQNRLRALRNRQDLFQEEGILNL-I 378
++++ D YF +++EH E+ R +F L+
Sbjct: 460 D----SDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFR------MVF-----LDFRF 502
Query: 379 LEAIDKINVITS----QGFLVNLAGD-------------ESGQSWDIISGYLYQLLAAII 421
LE KI ++ G ++N + + + I +L ++ +I
Sbjct: 503 LEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 422 KGNHTNCAQFANTNRLNWLFSRLGSQA 448
+T+ + A +F Q
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 4e-10
Identities = 80/557 (14%), Positives = 158/557 (28%), Gaps = 195/557 (35%)
Query: 975 NLDPPTGE--QQDA------LLAEQNRIRFMSFRTYRAEKNYAVSSGK------WYFEFE 1020
L PT D L+ +F+ + + E + + FE
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVG-----KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 1021 ILTAGPMRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQDK--KDY----SISG 1074
L G+D ++ A + L + + K+Y ++
Sbjct: 95 YLE-------------------GNDIHALAA-KLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 1075 FSLNGE----LLMDALGGETTFADVQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFSMCG 1130
+ + L G + F G GQ G N YF
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAI----F------G-GQ------G---NTDDYFE--E 172
Query: 1131 LQEGYEPFCVNMKRAVTYWYTRDQPIFENTDD----YPSVIDVTR-IPAGSDTPPCLKIS 1185
L++ Y+ + V + + + + T D + +++ + S+TP
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK---- 228
Query: 1186 HNTFETMEKANWEFLR---LSLPVTCMSTFIDENEKQRRWKEIRNRQQILMMEAVDNTTP 1242
++L +S P+ + ++ + TP
Sbjct: 229 ------------DYLLSIPISCPLIGVIQLA----------------HYVVTAKLLGFTP 260
Query: 1243 AHIEQIMKSGFSMS-DIKGKSASLPASVD-------QLRRYIEI------------KQSD 1282
+ +K S + +A A D +R+ I + +
Sbjct: 261 GELRSYLKGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 1283 LPSAVAAKKTREFRCPPREQPWRCFYCNLFVEATSKEILQIELGRTSTTLPLSAAV---L 1339
LP ++ P L + ++E +Q + +T++ LP V L
Sbjct: 319 LPPSILEDSLENNEGVPSPM--------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 1340 QNSERHVIPQFPPR----LKVQCLKPH------QWARVPNTS---------LEV----HA 1376
N ++++ PP+ L + K Q +R+P + L V H+
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHS 429
Query: 1377 LKLSDIRGWSMLCED------PISMLALHIP------EEDRCI---DILE-LIEM----- 1415
L ++ +D + + IP D + I E +++
Sbjct: 430 HLLVPAS--DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 1416 ---EKLLSFHA-HTLTL 1428
E F A H L
Sbjct: 488 VKWETTTQFKATHILDF 504
Score = 58.9 bits (142), Expect = 1e-08
Identities = 75/440 (17%), Positives = 132/440 (30%), Gaps = 146/440 (33%)
Query: 1174 AGSDTPPCLKISHNTFET---MEKANW--------EFLRLSLP-VTCMSTFIDENEKQRR 1221
A S P L +SH + E + A++ +F + LP T F ++E
Sbjct: 3 AYSTRP--LTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPT--EGFAADDEPTTP 57
Query: 1222 WKEIRNRQQILMMEAVDNTTPAHIEQIMKSGF--------SMSDIKGKSASLPASVDQ-- 1271
E+ + + V+ + +Q++ +DI +A L D
Sbjct: 58 -AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 1272 ------LRRYIEIK-----------QSDLPSAVAAKKTREFRCPPREQPWRCFYCNLF-- 1312
++ YI + S L AV + +F
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-------------LV-AIFGG 162
Query: 1313 ---VEATSKEILQIELGRTSTTL--PL---SAAVLQNSERHVIPQFPPRLKVQCLKPHQW 1364
+ +E L+ +L +T L L SA L R ++ Q L +W
Sbjct: 163 QGNTDDYFEE-LR-DLYQTYHVLVGDLIKFSAETLSELIRT--TLDAEKVFTQGLNILEW 218
Query: 1365 ARVPNTSLEVHALKLSDIRGWSMLCEDPISMLALHIPEEDRCIDILELIEMEKLLSFHAH 1424
P+ + + L PIS P LI ++ AH
Sbjct: 219 LENPSNTPDK-----------DYLLSIPISC-----P----------LIG---VIQL-AH 248
Query: 1425 TLTLYAALCYQANYRAAHVLCQHVDQKQLLYAIQSEYMSGPLRQGFYDLLIALHIESHAT 1484
Y + + Y+ G L+ A+ I +
Sbjct: 249 ----YVVTAKLLGFTPGELR---------------SYLKGATGHS-QGLVTAVAI-AETD 287
Query: 1485 SMEVCKNEFIIPLGPKLKELYEDGEMGHSLRSLRT---ESIRPTMKMTDIAPDSIENIRS 1541
S E F + + + L+ G +R S+ P++ DS+EN
Sbjct: 288 SWE----SFFVSVRKAITVLFFIG-----VRCYEAYPNTSLPPSILE-----DSLENNEG 333
Query: 1542 LYSP-----HFPLDVVRDYI 1556
+ SP + + V+DY+
Sbjct: 334 VPSPMLSISNLTQEQVQDYV 353
Score = 58.5 bits (141), Expect = 2e-08
Identities = 110/747 (14%), Positives = 204/747 (27%), Gaps = 299/747 (40%)
Query: 230 IIKYGD--STVLVQHSENGLWLTYKSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQ 287
+ +G +LV + + + L E+ F++
Sbjct: 10 TLSHGSLEHVLLVPTA---SFFIA-----------------SQLQEQ--------FNKIL 41
Query: 288 EEESRTARVIRKCSS---LFTQFISGLEALQVNRRHSLFCASV----NLNEMVMCLEDLI 340
E + + ++ L +F+ + +S+ + + L +
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLG-------------YVSSLVEPSKVGQFDQVLNLCL 88
Query: 341 NYFAQPEEDMEHEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGD 400
F E LE D I+ + ++ L+
Sbjct: 89 TEF---ENC----------------------------YLEGND-IHALAAK--LLQENDT 114
Query: 401 ESGQSWDIISGYLYQ----------------LLAAIIKGNHTNCAQFANTNRLNWLFSRL 444
++ ++I Y L A+ +GN A F
Sbjct: 115 TLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------------- 160
Query: 445 GSQASSEGTGMLDVLHCVLIDSPEALNMMRDEHIKVIISLLEKHGRD--------PKVLD 496
G Q +++ + L L + L + IK L + R + L+
Sbjct: 161 GGQGNTDDY--FEELR-DLYQTYHVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 497 VLCSLCVGNGVAVRSSQNNICDYL------LPGKNLLLQTQLDEHIKVIISLLEKHGRDP 550
+L L + + DYL P L+ QL H V + G P
Sbjct: 215 ILEWL---ENPSNTPDK----DYLLSIPISCP---LIGVIQL-AHYVVT---AKLLGFTP 260
Query: 551 -KVLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQLVDHVASYVPYPGGGEKWGG 609
++ L G + L+ A + + W
Sbjct: 261 GELRSYLK------GATGH------------SQGLV--------TAVAI---AETDSW-- 289
Query: 610 NGVGDDLYSFGFDGAHL--WTGGRRTEVIPGT-LEP-----YIKKGD--------VIGVA 653
+ + + + G R E P T L P ++ + + +
Sbjct: 290 ----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 654 LDLSIPIITFTFNG----------SLVSGAFRDFNLDGMFFPVIS-CSSKLSCRFLF--- 699
+ + N SLV+GA ++ + G P S L+ R
Sbjct: 346 QEQVQDYVN-KTNSHLPAGKQVEISLVNGA-KNLVVSG---PPQSLYGLNLTLRKAKAPS 400
Query: 700 GGDHGRLKYIPPEEFSPLVESLLPHQVLSIDPCFYFGNLPKVVLAGPWH----------V 749
G D R IP FS + L F LP V + P+H +
Sbjct: 401 GLDQSR---IP---FSE--------RKLKFSNRF----LP--VAS-PFHSHLLVPASDLI 439
Query: 750 EDDTAFVPTPVDTSMITLPHYV----ENIR---DKLAENIHEMWAMNKIEAGWMYGERRD 802
D + I +P Y ++R ++E I + ++ W E
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--W---ETTT 494
Query: 803 DVRKIHPCLIQFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYH 862
+ H ++ F S + L R + T + RV I+A G
Sbjct: 495 QFKATH--ILDFGP---GGASGLGVLTHRNKDGTGV------RV---------IVA-G-- 531
Query: 863 ISMDKPPSRIKTVRLPNEPFMQPNGYK 889
++D P++ + G+K
Sbjct: 532 -TLDIN---------PDDDY----GFK 544
Score = 52.0 bits (124), Expect = 2e-06
Identities = 104/601 (17%), Positives = 174/601 (28%), Gaps = 211/601 (35%)
Query: 563 NGVAVRS---SQNNI-CDYLLPGKNLLLQTQLVDHVASYVPYPGGGEKWGGNGVGDD--- 615
+ + R S ++ L+P + + +QL + +P P G DD
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF------AADDEPT 55
Query: 616 ----LYS-F-GF--DGAHLWTGGRRTEVIPGTL----EPYIKKGDVIGVALDL-SIPIIT 662
L F G+ G+ +V+ L Y++ D+ +A L T
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 663 FTFNGSLVSGAFRDFNLDGMFFPVISCSSKL-------SCRF--LFGGDHG--------- 704
L+ + F S +S L + + +FGG G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVGEGNAQLVAIFGG-QGNTDDYFEEL 173
Query: 705 RLKYIPPEEFSPLVESL----------LPHQVLSIDPCFYFG-NLPKVVLAGPWHVEDDT 753
R Y + + LV L L L + F G N+ + L P + D
Sbjct: 174 RDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKD 229
Query: 754 AFVPTPVDTSMITL---PHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPC 810
+ P+ +I + HYV + G+ GE R ++
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAK----------------LLGFTPGELRSYLKGATGH 273
Query: 811 ---LIQFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGY------ 861
L+ + + S S F+ K + + IG
Sbjct: 274 SQGLV------------TAVAIAETDSWES--FF-----VSVRKAITVLFFIGVRCYEAY 314
Query: 862 -HISMDKPPSRIKTVRLPNEPFMQPNGYKPAPLDLSAIALTPK-MEELVDQLAENTHNLW 919
+ S+ PPS ++ NE G P+P+ LS LT + +++ V++ N+H L
Sbjct: 315 PNTSL--PPSILEDSLENNE------G-VPSPM-LSISNLTQEQVQDYVNKT--NSH-LP 361
Query: 920 AKERIQ------------QGWT---YGLN---------EDPDMARSPH-----------L 944
A ++++ G YGLN D +R P L
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 945 V-------PYGKVDDAIKKANRDTASETVR----TLL--VYGYNLDPPTGEQQDALLAEQ 991
+ A N+D V + VY D G D
Sbjct: 422 PVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDGS--D------ 467
Query: 992 NRIRFMSFRTYRAEKNYAVSSGKWYFEFEILTAGPMRVGWAR---------VDCAPGAQL 1042
R + + I+ + V W +D PG
Sbjct: 468 -------LRVLSGSISERIVD-------CIIR---LPVKWETTTQFKATHILDFGPGGAS 510
Query: 1043 G 1043
G
Sbjct: 511 G 511
Score = 47.7 bits (113), Expect = 4e-05
Identities = 48/312 (15%), Positives = 78/312 (25%), Gaps = 122/312 (39%)
Query: 1313 VEATSKEILQIELGRTSTTLPLSAAVLQNSERHVIPQFPPRLKVQCLKPHQWARVPNTSL 1372
++A S L + G L + A + +L+ Q K P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIAS---------QLQEQFNKILP---EPTEGF 48
Query: 1373 EVHALKLSDIRGWSMLCEDPISMLAL---------HIPEEDRC---IDILELIEMEKLLS 1420
++P + L + E + +L L L
Sbjct: 49 AAD--------------DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC----LTE 90
Query: 1421 FHA--------HTLTLYAAL----------------CYQANYRAAHV------------L 1444
F H L A L Y A + L
Sbjct: 91 FENCYLEGNDIHALA--AKLLQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNSAL 145
Query: 1445 CQHVDQKQL-LYAIQSEYMSGPLRQG----FYDLLIALHIESHATSMEVCKNEFIIPLGP 1499
+ V + L AI G QG +++ L L+ +++ + + I
Sbjct: 146 FRAVGEGNAQLVAI----FGG---QGNTDDYFEELRDLY-QTYHVLVG----DLIKFSAE 193
Query: 1500 KLKELYEDGEMGHSLRS--------LRTESIRPTMKMTDIAPDSIENIRSLYSPHFPLDV 1551
L EL + + L S P P S PL
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-----------CPLIG 242
Query: 1552 VRD---YIMTAR 1560
V Y++TA+
Sbjct: 243 VIQLAHYVVTAK 254
Score = 36.2 bits (83), Expect = 0.12
Identities = 101/618 (16%), Positives = 169/618 (27%), Gaps = 221/618 (35%)
Query: 756 VPTPV--------DTSMITLPHYVENI--RDKLAENIHEMWA------MNKIEAGWMYGE 799
VPT + LP E D+ E+ + +E
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA-ELVGKFLGYVSSLVEPS--KVG 78
Query: 800 RRDDVRKIHPCLIQFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAI 859
+ D V + CL +FE L I HA LA
Sbjct: 79 QFDQVLNL--CLTEFENCY---------L-----EGNDI----------HA------LAA 106
Query: 860 GYHISMDKPPSRIKTV--------RLPNEPFMQPNGYKPAPLDLSAIALTPKM------- 904
D + K + + PF + + + L + ++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQ 163
Query: 905 ---EELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDT 961
++ ++L + L+ TY LV D I
Sbjct: 164 GNTDDYFEELRD----LYQ--------TY-----------HVLV-----GDLI-----KF 190
Query: 962 ASETVRTLL--------VYGYNLD-------PPTGEQQDALLAEQ---NRIRFMSFRTYR 1003
++ET+ L+ V+ L+ P +D LL+ I + Y
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 1004 AEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAPGAQLGSDENSWA--FDGFNRHIKIN 1061
A G E G V A ++ +SW F + I +
Sbjct: 251 V---TAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAETDSWESFFVSVRKAITV- 302
Query: 1062 LF------QQDKKDYSISGFSLNGELLMDALGGETTFADVQGEGFVPACTLGV-----GQ 1110
LF + + SL +L D+L EG VP+ L + Q
Sbjct: 303 LFFIGVRCYE-----AYPNTSLPPSILEDSLEN--------NEG-VPSPMLSISNLTQEQ 348
Query: 1111 --------RAKLTFGQDV-----NQLKYFSMCGLQEGYEPFCVNMKRAVTYWYTRDQPIF 1157
+ L G+ V N K + G + + +++A
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA---------- 398
Query: 1158 ENTDDYPSVIDVTRIPAGSDTPPCLKISHNTFETMEKANWEFLRLSLPV--TCMSTFIDE 1215
PS +D +RIP S+ K S+ FL ++ P + D
Sbjct: 399 ------PSGLDQSRIP-FSERKL--KFSN-----------RFLPVASPFHSHLLVPASDL 438
Query: 1216 NEKQRRWKEIRNRQQILMMEAVDNTTPAHIEQIMKSGFSMSDIKGKSASLPAS-VDQLRR 1274
K + + + + V +T G SD++ S S+ VD + R
Sbjct: 439 INKDLVKNNVSFNAKDIQI-PVYDT---------FDG---SDLRVLSGSISERIVDCIIR 485
Query: 1275 YIEIKQSDLPSAVAAKKT 1292
+ K T
Sbjct: 486 ----LPVKWETTTQFKAT 499
Score = 33.9 bits (77), Expect = 0.57
Identities = 49/323 (15%), Positives = 83/323 (25%), Gaps = 139/323 (43%)
Query: 1229 QQILM-MEAVDNTTPA---------HIEQIMKSGFSMSDI-----KGKSASLPASVDQ-L 1272
Q+ M M+ + A H + GFS+ DI + + +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 1273 R-RYIEIK-QSDLPSAVAAKKTREFRCPPREQPWRCFYCNLFVEATSKEILQI------E 1324
R Y + ++ + + +K +F E
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK-------------------IFKEINEHSTSYTFRSEKGL 1725
Query: 1325 LGRTSTTLP----LSAAVLQNSERHVIPQFPPRLKVQCLKP-------HQWARVPNTSL- 1372
L T T P + A + LK + L P H SL
Sbjct: 1726 LSATQFTQPALTLMEKAAFE------------DLKSKGLIPADATFAGH--------SLG 1765
Query: 1373 EVHAL-------KLSD------IRGWSMLCEDP--------ISMLALHIP-------EED 1404
E AL + RG +M P M+A++ P ++
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQE 1824
Query: 1405 RCIDILELIEMEKLLSFHAHTLTLYAALCYQANY-------------RAAHVLC------ 1445
++E + L NY RA +
Sbjct: 1825 ALQYVVERVGKRT------------GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 1446 --QHVDQKQLLYAIQSEYMSGPL 1466
Q +D +L ++ E + G L
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 3.9
Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 73/180 (40%)
Query: 1039 GAQ---LGSD--ENSWAFDGFNRHIKINLFQQ-DKKDYSISGFSL------NGELLMDAL 1086
G+Q +G D + S A +++ + D GFS+ N L
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQ--------DVWNRADNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 1087 GGETTFADVQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFSMCGLQEGYEPFCVNMKRAV 1146
GGE G+ + + Y +M +E
Sbjct: 1677 GGEK--------------------------GKRIRE-NYSAMI-----FETIVDG----- 1699
Query: 1147 TYWYTRDQPIFENTDDYPSVIDVT-RIPAGSDTPPCLKISHNT----FETMEKANWEFLR 1201
+ + IF+ +++ + T R G L + T MEKA +E L+
Sbjct: 1700 ---KLKTEKIFKEINEHST--SYTFRSEKGL-----LSATQFTQPALT-LMEKAAFEDLK 1748
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 58.9 bits (142), Expect = 1e-09
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 610 NGVGDDLYSFGFDGA--HLWTGGRRTEVIPGTLEPY---IKKGDVIGVALDLSIPIITFT 664
+G + S+G+D L+ + ++ + + V LD+ + +
Sbjct: 120 ALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYA 179
Query: 665 FNGSLVSGAFRDFNLDGMFFPVISCSSKLSCRFLFGGDHGRLKYIP 710
G+ + AFR +P +S +G R++Y+
Sbjct: 180 IGGTYLGPAFRGLK-GRTLYPAVSAV--------WGQCQVRIRYLG 216
Score = 55.1 bits (132), Expect = 3e-08
Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 47/152 (30%)
Query: 1007 NYAVSSGKWYFEFEILTAGP---MRVGWARVDCAPGAQ-----LGSDENSWAFDGFNRHI 1058
S G +E VG A LGS+ SW +D +
Sbjct: 79 KRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKL 138
Query: 1059 KIN------------------------LFQQDKKDYSISGFSLNGELLMDALGGETTFAD 1094
L D ++ ++ +++ G L A F
Sbjct: 139 YHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLG-YAIGGTYLGPA------FRG 191
Query: 1095 VQGEGFVPACTLGVGQRAKLTFGQDVNQLKYF 1126
++G PA + +GQ +++Y
Sbjct: 192 LKGRTLYPAVS--------AVWGQCQVRIRYL 215
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 58.1 bits (140), Expect = 3e-09
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 610 NGVGDDLYSFGFDGA--HLWTGGRRTEVIPGTL----EPYIKKGDVIGVALDLSIPIITF 663
VG++ S+G+D L+ G+ + D VALD+ ++F
Sbjct: 110 TLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSF 169
Query: 664 TFNGSLVSGAFRDFNLDGMFFPVISCS---SKLSCRFLFGGD 702
+G + AFR +PV+S ++ R+L G D
Sbjct: 170 IVDGQYMGVAFRGLK-GKKLYPVVSAVWGHCEIRMRYLNGLD 210
Score = 54.7 bits (131), Expect = 4e-08
Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 48/176 (27%)
Query: 984 QDALLAEQNRIRFMSFRTYRAEKNYAVSSGKWYFEFEILTAGP---MRVGWARVDCAPGA 1040
+D L S R + G ++ VG A D +
Sbjct: 48 EDDKLIFHRHPVAQSTDAIRG--KVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHS 105
Query: 1041 Q-----LGSDENSWAFDGFNRHIKINLFQQDKKDYSISG--------------------- 1074
+G++ SW +D + + Q K Y
Sbjct: 106 VGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDG 165
Query: 1075 ---FSLNGELLMDALGGETTFADVQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFS 1127
F ++G+ + A F ++G+ P + +G +++Y +
Sbjct: 166 TLSFIVDGQYMGVA------FRGLKGKKLYPVVS--------AVWGHCEIRMRYLN 207
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 52.1 bits (124), Expect = 3e-07
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 610 NGVGDDLYSFGFDG--AHLWTGGRRTEVIPGTLEPYIKK---GDVIGVALDLSIPIITFT 664
+G + S+G+D L+ + E P ++ + + V LD+ + ++
Sbjct: 117 ALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYS 176
Query: 665 FNGSLVSGAFRDFNLDGMFFPVISCSSKLSC-RFLFGGDHGR 705
G+ + AFR +P +S R + G+
Sbjct: 177 IGGTYLGPAFRGLK-GRTLYPSVSAVWGQCQVRIRYMGERRV 217
Score = 42.8 bits (100), Expect = 4e-04
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 47/162 (29%)
Query: 1007 NYAVSSGKWYFEFEILTAGP---MRVGWARVDC-----APGAQLGSDENSWAFDGFNRHI 1058
S G +E VG A A LGS+ SW +D +
Sbjct: 76 KRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKL 135
Query: 1059 ----------------KINLFQQ--------DKKDYSISGFSLNGELLMDALGGETTFAD 1094
+ D ++ ++ +S+ G L A F
Sbjct: 136 YHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLG-YSIGGTYLGPA------FRG 188
Query: 1095 VQGEGFVPACTLGVGQRAKLTFGQDVNQLKYFSMCGLQEGYE 1136
++G P+ + +GQ +++Y ++E
Sbjct: 189 LKGRTLYPSVS--------AVWGQCQVRIRYMGERRVEETRR 222
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR
motifs, unfolded protein response, putativ binding
protein, plant protein; 1.95A {Arabidopsis thaliana}
Length = 199
Score = 50.3 bits (120), Expect = 9e-07
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 21/164 (12%)
Query: 36 ASKQRSEGEKVRVGDDLILVSVATERYLHTTKENDLS---------VVNASFHVTHWSVQ 86
A+ EG ++ G + L+ T+ LH+ S ++W V+
Sbjct: 8 AAASGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVK 67
Query: 87 PYGTGISRMKYVMCLEVMSCGSSTEVTNVS--LYLHPGLICPDRSKYLFHIVVYEGGSVM 144
P + + + G++ + ++ +LH L S + + G
Sbjct: 68 PVPGTTEKQ-----GDAVKSGATIRLQHMKTRKWLHSHLHASPISGN-LEVSCF-GDDTN 120
Query: 145 SQARSLWRLELARTKWAGGFINWYHPMRIRHLTTGRYLSTNENN 188
S W+L + + +G +R++H+ T YL +++
Sbjct: 121 SDTGDHWKLII---EGSGKTWKQDQRVRLQHIDTSGYLHSHDKK 161
Score = 39.9 bits (93), Expect = 0.003
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 18 VGLQEHSQGEACWWTVHPASKQ-RSEGEKVRVGDDLILVSVATERYLHT 65
V +W V P +G+ V+ G + L + T ++LH+
Sbjct: 51 VTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHS 99
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 44.9 bits (106), Expect = 5e-05
Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 20/157 (12%)
Query: 41 SEGEKVRVGDDLILVSVATERYLHTTKENDLSV-----VNASFHV----THWSVQPYGTG 91
S+ + V L ++ LH+ S V A + +HW + P
Sbjct: 2 SDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNA 61
Query: 92 IS-RMKYVMCLEVMSCGSSTEVTNVSLYLHPGLICPDRSKYLFHIVVYEGGSVMSQARSL 150
R + C + + T T L+ H SK + + G S
Sbjct: 62 KCNRGDAIKCGDKIRLKHLT--TGTFLHSHH--FTAPLSKQHQEVSAF-GSEAESDTGDD 116
Query: 151 WRLELARTKWAGGFINWYHPMRIRHLTTGRYLSTNEN 187
W + +W ++RH TG YLS +
Sbjct: 117 WTVICNGDEWLES-----EQFKLRHAVTGSYLSLSGQ 148
Score = 36.5 bits (84), Expect = 0.028
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 16/102 (15%)
Query: 29 CWWTVHPASKQRS-EGEKVRVGDDLILVSVATERYLHTTKENDLSVVNASFHVTHWSVQP 87
W + PA + G+ ++ GD + L + T +LH+ A H V
Sbjct: 51 SHWQIFPALNAKCNRGDAIKCGDKIRLKHLTTGTFLHSHH------FTAPLSKQHQEVSA 104
Query: 88 YG-TGISRMKY---VMCLEVMSCGSST-----EVTNVSLYLH 120
+G S V+C S VT L L
Sbjct: 105 FGSEAESDTGDDWTVICNGDEWLESEQFKLRHAVTGSYLSLS 146
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 42.8 bits (101), Expect = 9e-04
Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 31/217 (14%)
Query: 359 LRALRNRQDLFQEEGILNLILEAID------KINVITSQGFLVNLA-GDESGQSWDIISG 411
+ + +++G L+ + + I N + + L ++ + D+
Sbjct: 146 AKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAA---LSEISESHPNSNLLDLNPQ 202
Query: 412 YLYQLLAAIIKGNHTNCAQFANTNRLNWLFSRLGSQASSEGTGMLDVLHCVLIDSPEALN 471
+ +LL A+ C ++ L+ S + E + + + L + A+
Sbjct: 203 NINKLLTAL-----NECTEWGQIFILD-CLSNYNPKDDREAQSICERVTPRLSHANSAVV 256
Query: 472 MMRDEHIKVIISLLEKHGRDPKVLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQ 531
+ +KV++ LE +D ++L V + S + + L NL++Q +
Sbjct: 257 L---SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKR 313
Query: 532 ---LDEHIKVIISLLEKHGRDP-----KVLDVLCSLC 560
L + IKV DP + LD++ L
Sbjct: 314 PEILKQEIKVFFVKYN----DPIYVKLEKLDIMIRLA 346
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.18
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 19/44 (43%)
Query: 864 SMDKPPSRIKTVRLPNEPFMQPNGYKP--APLDLSAIALTPKME 905
++ K + +K Y AP A+A+ ME
Sbjct: 21 ALKKLQASLKL-------------YADDSAP----ALAIKATME 47
Score = 31.1 bits (69), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 9/29 (31%)
Query: 1414 EMEKLLSFHAHTLTLYA-----ALCYQAN 1437
++KL + +L LYA AL +A
Sbjct: 21 ALKKLQA----SLKLYADDSAPALAIKAT 45
Score = 30.3 bits (67), Expect = 3.0
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 15/39 (38%)
Query: 1512 HSLRSLRTESIRPTMKMTDIAPDSIENIRSLYSPHFPLD 1550
+L+ L ++ ++K+ A DS +P +
Sbjct: 20 QALKKL--QA---SLKL--YADDS--------APALAIK 43
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.2 bits (75), Expect = 0.58
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 24/106 (22%)
Query: 978 PPTGEQQDALLAEQN----RIRFMS-FRTYRAEKN---YAVSSGKWYFE---FEILTAGP 1026
++ ++ IR +S ++ + V + + + E E+ P
Sbjct: 125 SSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPF-ENIAIEL----P 179
Query: 1027 MRVGWARVDCAPGAQLGSDENSWAFDGFNRHIKINLFQQDKKDYSI 1072
+ + D N+ D N+ K + K Y +
Sbjct: 180 PN----EILFSENN--DMDNNNDGVDELNK--KCTFWDAISKLYYV 217
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.78
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 1215 ENEKQRRWKEIRNRQQILMMEAVDNTTPAHIEQIMKSGFSMSDIKGKSASLPASVDQLRR 1274
E E R+W+E R+++ + +D + ++ + D++ + +R
Sbjct: 83 EPESIRKWRE-EQRKRL---QELDAASKVMEQEWREKA--KKDLE----------EWNQR 126
Query: 1275 YIEIKQSDLPSAVAAKKTREFR 1296
E + + + A K F
Sbjct: 127 QSEQVEKNKINNRIADK--AFY 146
Score = 30.5 bits (68), Expect = 3.3
Identities = 7/85 (8%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 206 CLRQEKDDQKIVLEDKDLEVIGAPIIKYGDSTVLVQHSENGLWLTYKSYETKKKGLGKVE 265
+R+ +++Q+ L++ D + W + + + K +
Sbjct: 86 SIRKWREEQRKRLQELDAA--SK---VMEQEWREKAKKDLEEW--NQRQSEQVE---KNK 135
Query: 266 EKQAVLHEEGKMDDGLDFSRSQEEE 290
+ + F + + +
Sbjct: 136 INNRIADKA--------FYQQPDAD 152
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 33.2 bits (75), Expect = 0.80
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 478 IKVIISLLEKHGRDP----KVLDVLCSLCVGNGVAVRSSQNNICDYLLPGKNLLLQTQLD 533
++ +I +L+ D LD L ++ + + L + + +
Sbjct: 62 MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ 121
Query: 534 EHIKVIISLLEKHGRDPK--VLDVLCSLCVGNGVAVRS 569
E++ +++SLLE+ + + +L SL G V+
Sbjct: 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQ 159
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45,
flexible regions, monomer cycle; NMR {Homo sapiens}
Length = 165
Score = 31.6 bits (71), Expect = 1.0
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 334 MCLEDLINYFAQPEEDMEHEEKQNRLRALRNRQDLFQEEGILNL-ILEAIDKINVITSQG 392
M LE+ + + E AL + + + + EA +NV
Sbjct: 1 MTLEEF------SAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNV 54
Query: 393 FLVNLAGDESGQSWDIISGYLYQLLAAIIKGNHTNCAQFANTNRL-NWL-FSRLGSQASS 450
L LA DE D+ + L+ A N N + +N RL L A+S
Sbjct: 55 VLCLLAADED-DDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAAS 113
Query: 451 EGTGMLDVLHCVLIDSPEALNMMRDEHIKVIISLLEKHGRDPKV 494
EG LHCVL+ +P + ++I E D V
Sbjct: 114 EGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWV 157
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein,
galactosylcera lauryldimethylamine-N-oxide, lipid,
detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB:
2dob_A*
Length = 83
Score = 29.2 bits (65), Expect = 2.3
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 496 DVLCSLC------VGNGVAVRSSQNNICDYL------LPGKNLLLQ--TQLDEHIKVIIS 541
+ C +C G+ + +++ I YL LP N+ +D ++ VI+
Sbjct: 3 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILD 62
Query: 542 LLEKHGRDPKVLDVLCS---LC 560
+++ P +CS LC
Sbjct: 63 IIKGEMSRP---GEVCSALNLC 81
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 28.7 bits (64), Expect = 5.3
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 352 HEEKQNRLRALRNRQDLFQEEGILNLILEAIDKINVITSQGFLVNLAGDESGQSWDIISG 411
H +R++ L ++ + + +++ + S LV G DI+
Sbjct: 2 HHHHHHRMKQLEDKVEELLSK-----NYHLENEVARLRSPPLLV-------GVVSDILED 49
Query: 412 YLYQLLAAIIKGNHTNCAQFANTNRL 437
+ ++ N +Q+ N L
Sbjct: 50 GRVVVKSSTGPKFVVNTSQYINEEEL 75
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus
musculus} SCOP: a.90.1.1
Length = 124
Score = 28.8 bits (64), Expect = 6.4
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 1527 KMTDIAPDSIENIRSLYSPHFPLDV 1551
++ + +E + Y +FP+++
Sbjct: 7 QVQQLEIKFLEQVDQFYDDNFPMEI 31
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter
associated D CORC_HLYC, structural genomics, PSI-2; 1.30A
{Porphyromonas gingivalis} SCOP: d.145.1.4
Length = 93
Score = 27.9 bits (63), Expect = 8.1
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 15/52 (28%)
Query: 1045 DENSWAFDG------FNRHIKIN--LFQQDKKDY-SISGFSLNGELLMDALG 1087
+ S+ F+G ++ + F + + ++SG ++
Sbjct: 13 GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGL------FLEIKQ 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 24,243,217
Number of extensions: 1499054
Number of successful extensions: 3213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3155
Number of HSP's successfully gapped: 65
Length of query: 1568
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1462
Effective length of database: 3,742,167
Effective search space: 5471048154
Effective search space used: 5471048154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.9 bits)