RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13309
(1568 letters)
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 109 bits (274), Expect = 1e-27
Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 123 LICPD--RSKYLFH-IVVYEGGSVMSQARSLWRLELAR-TKWAGGFINWYHPMRIRHLTT 178
L C + + +++F + + + +++LW +E+ + GG W R +HL T
Sbjct: 16 LTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFRFKHLAT 75
Query: 179 GRYLSTNENNE-----LYLVTRDEATTASSTFCLRQEKDDQKIVLEDK-------DLEVI 226
G YL+ + + L + +S LR ++ L + +
Sbjct: 76 GHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFEL 135
Query: 227 GAPIIKYGD------STVLVQHSENGLWLTYKSY----ETKKKGLGKV------EEKQAV 270
++ GD S V ++H W+ + E +K + K+ E+K+A
Sbjct: 136 DPTTLRGGDSLVPRNSYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAF 195
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 178
Score = 60.0 bits (145), Expect = 1e-10
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 22/158 (13%)
Query: 41 SEGEKVRVGDDLILVSVATERYLHTTKEN-----DLSVVNASFHV----THWSVQPYGTG 91
S+ + V L ++ LH+ V A + +HW + P
Sbjct: 2 SDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNA 61
Query: 92 ISRMKYVMCLEVMSCGSSTEVTNV--SLYLHPGLICPDRSKYLFHIVVYEGGSVMSQARS 149
+ + CG + ++ +LH SK V G S
Sbjct: 62 KCNR-----GDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQH-QEVSAFGSEAESDTGD 115
Query: 150 LWRLELARTKWAGGFINWYHPMRIRHLTTGRYLSTNEN 187
W + +W ++RH TG YLS +
Sbjct: 116 DWTVICNGDEW-----LESEQFKLRHAVTGSYLSLSGQ 148
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 607 WGGNGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPY---IKKGDVIGVALDLSIPIITF 663
G + + + L+ + E P + + + V LD+ + +
Sbjct: 110 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGY 169
Query: 664 TFNGSLVSGAFRDFNLDGMFFPVISCSSKLSC-RFLFGG 701
+ G+ + AFR +P +S R + G
Sbjct: 170 SIGGTYLGPAFRGLK-GRTLYPSVSAVWGQCQVRIRYMG 207
Score = 36.0 bits (82), Expect = 0.019
Identities = 26/151 (17%), Positives = 38/151 (25%), Gaps = 39/151 (25%)
Query: 991 QNRIRFMSFRTYRAEKNYAVSSGKWYFEFEILTAGP---MRVGWARVDC-----APGAQL 1042
+ R S R S G +E VG A A L
Sbjct: 56 ERRPVAQSTDGVRG--KRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALL 113
Query: 1043 GSDENSWAFDGFNRHIKINLFQQDKKDYSISG-----------------------FSLNG 1079
GS+ SW +D + + Y +S+ G
Sbjct: 114 GSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGG 173
Query: 1080 ELLMDALGGETTFADVQGEGFVPACTLGVGQ 1110
L A F ++G P+ + GQ
Sbjct: 174 TYLGPA------FRGLKGRTLYPSVSAVWGQ 198
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 44.0 bits (103), Expect = 5e-05
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 593 HVASYVPYPGGGEKWGGNGVGDDLYSFGFDGAHLWTGGRRTEVIPGTLEPYIKKGDVIGV 652
H Y G E+ G +G + T + D V
Sbjct: 95 HSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAF-----LVPDKFLV 149
Query: 653 ALDLSIPIITFTFNGSLVSGAFRDFNLDGMFFPVISCS---SKLSCRFLFGGDHGRLKYI 709
ALD+ ++F + + AFR +P++S +++ R++ G L
Sbjct: 150 ALDMDEGTLSFIVDQQYLGIAFRGLR-GKKLYPIVSAVWGHCEITMRYI-----GGLDPE 203
Query: 710 PP 711
P
Sbjct: 204 PL 205
Score = 31.3 bits (70), Expect = 0.72
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 998 SFRTYRAEKNYAVSSGKWYFEFEILTAGP---MRVGWARVDC-----APGAQLGSDENSW 1049
S R ++ G +E T VG D + +GS E SW
Sbjct: 53 STDCIRG--KVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSW 110
Query: 1050 AFDGFNRHI 1058
+D +
Sbjct: 111 GWDLGRNKL 119
>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 34.0 bits (78), Expect = 0.064
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 335 CLEDLINYFAQPEEDMEHEEKQNRLRAL-RNRQDLFQEEGILNLILEAIDKINVITSQGF 393
LEDL+ YF + + + R RQ L +E+ IL I + + G
Sbjct: 41 LLEDLV-YFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGP 99
Query: 394 LVNL--AGDESGQSWDIISGYLYQLLAAIIKGNHTN 427
++ L GD+ + I Y++L + N
Sbjct: 100 MLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKN 135
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 33.5 bits (76), Expect = 0.25
Identities = 46/277 (16%), Positives = 82/277 (29%), Gaps = 31/277 (11%)
Query: 696 RFLFGGDHGRLKYIPPEEFSPLVESLLPHQVLSIDPCFYFGNLPKVVLAGPWHVEDDTAF 755
R L + + F +LLP L DPC ++ + DT
Sbjct: 177 RNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCF----LAGDTRS 232
Query: 756 VPTPVDTSMITLPHYVEN-IRDKLAENIHEMW--------AMNKIEAGWMYGERRDDVRK 806
P TSM TL N + +L ++ W A + A RD +
Sbjct: 233 SEMPELTSMHTLLLREHNRLATELKS-LNPRWDGERLYQEARKIVGAMVQIITYRDYLPL 291
Query: 807 IHPCLIQFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISMD 866
+ R + R + + +F + R H + P + +
Sbjct: 292 VLGPTAM---RKYLPTYRSYN--DSVDPRIANVFTNAFRY-GHTLIQPFMFRLDNRYQPM 345
Query: 867 KPPSRIKTVRLPNEPFMQPNGYKPAPLDLSAIALTPKM--------EELVDQLAENTHNL 918
+P R+ R+ + P+ +A K+ +E+ ++L E +
Sbjct: 346 EPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRI 405
Query: 919 ---WAKERIQQGWTYGLNEDPDMARSPHLVPYGKVDD 952
+Q+ +GL R L V
Sbjct: 406 GLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQ 442
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 28.9 bits (65), Expect = 0.52
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 12/43 (27%)
Query: 453 TGML------DVLHCVLIDSPEALNMMRDEHIKVIISLLEKHG 489
TGML +L L+ S ++L DE +++ + HG
Sbjct: 25 TGMLLELSPAQLLL--LLASEDSLRARVDEAMEL----IIAHG 61
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 28.1 bits (62), Expect = 1.9
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 496 DVLCSLC------VGNGVAVRSSQNNI-------CDYLLPGKNLLLQTQLDEHIKVIISL 542
DV C +C V + ++ I C L + Q +D + I+S+
Sbjct: 1 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSI 60
Query: 543 LEKHGRDPKVLDVLCSLC 560
L + P+++ + LC
Sbjct: 61 LLE-EVSPELVCSMLHLC 77
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Bacillus subtilis
[TaxId: 1423]}
Length = 301
Score = 29.8 bits (65), Expect = 2.6
Identities = 12/113 (10%), Positives = 24/113 (21%)
Query: 753 TAFVPTPVDTSMITLPHYVENIRDKLAENIHEMWAMNKIEAGWMYGERRDDVRKIHPCLI 812
T+F+ T + + + N R+ A + + P
Sbjct: 36 TSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEW 95
Query: 813 QFERRIWRLCSRISRLCSRIRSETSILFYHPPRVKFHAKVLPTILAIGYHISM 865
+ I+ T +I+A H
Sbjct: 96 IRPSDVELFKKWQQEAGGLIKIVTLAPEEDQHFELIRHLKDESIIASMGHTDA 148
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 30.1 bits (68), Expect = 2.7
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 906 ELVDQLAENTHNLWAKERIQQGWTYGLNEDPDMARSPHLVPYGKVDDAIKKANRDTASET 965
E V+QL E E ++ G Y P G + A+
Sbjct: 188 EAVEQLLE--------ENVKLGIDY------------IAYPLGNFTQIVH-----AANYA 222
Query: 966 VRTLLVYGYNLDPPTGEQQDALLAEQNRIRF--MSFRTYRAEKNYAVSSGKWYFEFEILT 1023
+R +++G + P G +++ ++ RIR + + K A + G + F ++T
Sbjct: 223 LRAGMMFG-GVTP--GAREEQRDYQRRRIRAFVLYLGEHDMVK-TAAAFGAIFTGFPVIT 278
Query: 1024 AGPM 1027
P+
Sbjct: 279 DQPL 282
>d1rtua_ d.1.1.4 (A:) RNase U2 {Ustilago sphaerogena [TaxId: 5271]}
Length = 114
Score = 28.3 bits (63), Expect = 3.1
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 999 FRTYRAEKNYAVSSGKWYFEFEILTAGPMRVGWARVDCAPGA-QLGSDENSWAFDGFNRH 1057
+ +E + EF ++ GP +PG ++ N+ F H
Sbjct: 43 YYDEASEDITLCCGSGPWSEFPLVYNGP-YYSSRDNYVSPGPDRVIYQTNTGEFCATVTH 101
Query: 1058 IK 1059
Sbjct: 102 TG 103
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 124
Score = 28.2 bits (63), Expect = 3.1
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 1527 KMTDIAPDSIENIRSLYSPHFPLDV 1551
++ + +E + Y +FP+++
Sbjct: 7 QVQQLEIKFLEQVDQFYDDNFPMEI 31
>d1rj8a_ b.22.1.1 (A:) Ectodysplasin A, Eda-a1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 28.0 bits (62), Expect = 4.6
Identities = 12/126 (9%), Positives = 32/126 (25%), Gaps = 23/126 (18%)
Query: 79 HVTHWSVQPYGTGISRMKYVMCLEVMSCGSSTEVTNVSLYLHPGLICP-DRSKYLFHIVV 137
+ WS + ++ EV Y + + + + +
Sbjct: 23 VLNDWSRITMNPKVFKLHPR--------SGELEVLVDGTYFIYSQVYYINFTDFASYE-- 72
Query: 138 YEGGSVMSQARSLWRLELARTKWAGGFINWYHPM---RIRHLTTGRYLSTNENNELYLVT 194
V+ + L T+ Y+ + L + ++ + +
Sbjct: 73 -----VVVDEKPF----LQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISIN 123
Query: 195 RDEATT 200
+ TT
Sbjct: 124 MSKHTT 129
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 29.0 bits (64), Expect = 5.7
Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 16/187 (8%)
Query: 202 SSTFCLRQEKDDQKIVLEDKDLEVIGAPIIKYGDSTVLVQH--SENGL--------WLTY 251
+ + + ++ I+ E+ G PIIK G L++ TY
Sbjct: 7 ADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTY 66
Query: 252 KSYETKKKGLGKVEEKQAVLHEEGKMDDGLDFSRSQEEESRTARVIRKCSSLFTQFISGL 311
+S+ ++ L + E+ + E D + + S + RK ++I +
Sbjct: 67 RSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRK------EYIQPV 120
Query: 312 EALQVNRRHSLFCASVNLNEMVMCLEDLINYFAQPEEDMEHEEKQNRLRALRNRQDLFQE 371
+ +N E L + F ++ + + R+ + ++
Sbjct: 121 QLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARD 180
Query: 372 EGILNLI 378
G + I
Sbjct: 181 NGPGHNI 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,951,322
Number of extensions: 288302
Number of successful extensions: 674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 17
Length of query: 1568
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1471
Effective length of database: 1,075,786
Effective search space: 1582481206
Effective search space used: 1582481206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)