BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1331
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 8 QYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLY 67
++ W+PA E L M+E NYPE LK +V+ APK+F +A+ ++K FL E T KI +
Sbjct: 161 KHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVL 220
Query: 68 RAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKS 127
A W+ +LL+ + D P GG DPDGNP+C +KI G +P+ Y++ + +
Sbjct: 221 ---GANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ 277
Query: 128 LEEN 131
E +
Sbjct: 278 YEHS 281
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 8 QYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLY 67
++ W+PA E L M+E NYPE LK +V+ APK+F +A+ ++K FL E T KI +
Sbjct: 161 KHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVL 220
Query: 68 RAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKS 127
A W+ +LL+ + D P GG DPDGNP+C +KI G +P+ Y++ + +
Sbjct: 221 ---GANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ 277
Query: 128 LEEN 131
E +
Sbjct: 278 YEHS 281
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 8 QYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLY 67
++ W+PA E L +E NYPE LK +V+ APK+F +A+ ++K FL E T KI +
Sbjct: 161 KHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVL 220
Query: 68 RAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKS 127
A W+ +LL+ + D P GG DPDGNP+C +KI G +P+ Y++ + +
Sbjct: 221 ---GANWKEVLLKHISPDQVPVEYGGTXTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ 277
Query: 128 LEEN 131
E +
Sbjct: 278 YEHS 281
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 29 YPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWP 88
YPE + Y+INAP F+ A+R+ K FL T+SKI + + ++ LL+Q+ + P
Sbjct: 202 YPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILG---SSYQKELLKQIPAENLP 258
Query: 89 ASMGG 93
GG
Sbjct: 259 VKFGG 263
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 4 FSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISK 63
F+M+Q A ++L M+ M + ++P K + I+ P FT + VVK FL + +
Sbjct: 206 FTMQQAASLRTSDL-RKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264
Query: 64 IHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDG 100
+ ++ + + + ++++E++ P+ GG DG
Sbjct: 265 VFVHGDDLSGF----YQEIDENILPSDFGGTLPKYDG 297
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 YPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWP 88
YPE + Y+I++P F+ +++VK FL T+SKI + + ++ LL+Q+ + P
Sbjct: 217 YPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFIL---GSSYKKELLKQIPIENLP 273
Query: 89 ASMGGAG 95
GG
Sbjct: 274 VKYGGTS 280
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 29 YPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMWP 88
YPE + Y+I++P F+ +++VK FL T+SKI + + ++ LL+Q+ + P
Sbjct: 217 YPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFIL---GSSYKKELLKQIPIENLP 273
Query: 89 ASMGGAG 95
GG
Sbjct: 274 VKYGGTS 280
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 5 SMKQYAWRPAAELVLCMLQ----MYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ K + + AA L L+ + ++P K + I+ P FT + VVK FL
Sbjct: 202 NFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL 261
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDG 100
+ ++ ++ + + + ++++E++ P+ GG DG
Sbjct: 262 LERVFVHGDDLSGF----YQEIDENILPSDFGGTLPKYDG 297
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 28 NYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMW 87
++P ++ ++IN P +F + ++K FL E +IH++ ++ LL+ D+
Sbjct: 186 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG---NNYKQSLLQHF-PDIL 241
Query: 88 PASMGG 93
P GG
Sbjct: 242 PLEYGG 247
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 65 HLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPI 124
H A+ AK I + + E + A +GG DPD NPR ++ +
Sbjct: 15 HRKAAQDAKRGKIFTKIIRELVTAAKLGGG--DPDANPR----------------LRAAV 56
Query: 125 DKSLEENYTQACVKK 139
DK+L N T+ + +
Sbjct: 57 DKALSNNMTRDTLNR 71
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 28 NYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLEQMEEDMW 87
++P ++ ++IN P +F + +K FL E +IH + ++ LL+ D+
Sbjct: 170 SFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERIHXH---GNNYKQSLLQHF-PDIL 225
Query: 88 PASMGG 93
P GG
Sbjct: 226 PLEYGG 231
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 71 PAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKS 117
P K +LL Q D WP + +G DP GN + + +G K
Sbjct: 358 PGKRYEVLLIQSYHDEWPVNRAASGTDP-GNETPFSGLYVVGDGAKG 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,170,440
Number of Sequences: 62578
Number of extensions: 208823
Number of successful extensions: 326
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 14
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)